Wall clock time and date at job start Tue Mar 31 2020 23:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50695 * 119.99985 * 2 1 4 4 C 1.53005 * 109.47334 * 239.99836 * 3 2 1 5 5 O 1.42891 * 109.47223 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.46762 * 120.00602 * 3 2 1 7 7 C 1.50704 * 109.46873 * 179.97438 * 6 3 2 8 8 O 1.21279 * 120.00093 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99847 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99860 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27292 * 34.30345 * 10 9 7 12 12 C 1.54000 * 110.31047 * 272.21219 * 10 9 7 13 13 N 1.48115 * 106.94761 * 242.18051 * 12 10 9 14 14 C 1.46899 * 111.00678 * 214.20565 * 13 12 10 15 15 C 1.50707 * 109.46992 * 307.45498 * 14 13 12 16 16 O 1.21298 * 119.99465 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00238 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00053 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00091 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99864 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47305 * 119.99743 * 22 20 18 25 25 H 1.48502 * 109.47327 * 240.00062 * 22 20 18 26 26 C 1.48540 * 105.86678 * 334.74612 * 13 12 10 27 27 C 1.54598 * 110.30819 * 156.39529 * 10 9 7 28 28 H 1.08996 * 110.72328 * 22.60878 * 27 10 9 29 29 C 1.53005 * 110.72178 * 259.33322 * 27 10 9 30 30 H 1.08003 * 120.00147 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.99735 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47334 * 300.00929 * 4 3 2 34 34 H 1.09007 * 109.46722 * 60.00461 * 4 3 2 35 35 H 1.09000 * 109.47309 * 180.02562 * 4 3 2 36 36 H 0.96696 * 114.00577 * 59.99665 * 5 3 2 37 37 H 1.08990 * 109.47600 * 59.99845 * 6 3 2 38 38 H 1.08997 * 109.46934 * 299.99592 * 6 3 2 39 39 H 0.96996 * 120.00436 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.91447 * 1.56566 * 12 10 9 41 41 H 1.09000 * 109.91056 * 122.85596 * 12 10 9 42 42 H 1.08995 * 109.47423 * 67.45113 * 14 13 12 43 43 H 1.08999 * 109.47348 * 187.45572 * 14 13 12 44 44 H 0.97003 * 120.00273 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99867 * 180.02562 * 21 20 18 46 46 H 1.09006 * 110.66684 * 280.73949 * 26 13 12 47 47 H 1.08995 * 110.81165 * 157.67285 * 26 13 12 48 48 H 1.09000 * 109.47294 * 59.99227 * 29 27 10 49 49 H 1.08996 * 109.47389 * 180.02562 * 29 27 10 50 50 H 1.09003 * 109.46600 * 300.00092 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3860 1.2492 7 6 3.6971 2.6908 1.2489 8 8 3.5461 3.4782 0.3390 9 7 4.5392 2.9827 2.2599 10 6 5.2727 4.2509 2.2593 11 1 4.6643 5.0388 1.8152 12 6 6.5984 4.1014 1.4902 13 7 7.6901 4.3599 2.4571 14 6 8.8250 5.0261 1.8043 15 6 9.2386 4.2376 0.5884 16 8 8.6459 3.2210 0.2944 17 7 10.2670 4.6619 -0.1722 18 6 10.6436 3.9443 -1.2780 19 1 10.1159 3.0391 -1.5399 20 6 11.7036 4.3822 -2.0626 21 7 12.3448 5.4843 -1.7449 22 14 12.2162 3.4048 -3.5697 23 1 11.3410 2.2131 -3.7081 24 1 12.0882 4.2567 -4.7792 25 1 13.6273 2.9671 -3.4195 26 6 7.1016 5.2235 3.5128 27 6 5.6805 4.6356 3.7001 28 1 5.7089 3.7545 4.3411 29 6 4.7289 5.6901 4.2688 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 3.6514 0.5576 -1.2493 34 1 2.3164 1.3285 -2.1393 35 1 3.4884 2.3299 -1.2490 36 1 0.5438 2.4030 0.7658 37 1 3.6514 0.5575 1.2492 38 1 2.3165 1.3282 2.1392 39 1 4.6603 2.3528 2.9875 40 1 6.6847 3.0904 1.0921 41 1 6.6406 4.8278 0.6786 42 1 8.5317 6.0316 1.5027 43 1 9.6614 5.0851 2.5008 44 1 10.7409 5.4751 0.0627 45 1 13.0845 5.7902 -2.2928 46 1 7.0483 6.2592 3.1771 47 1 7.6737 5.1490 4.4375 48 1 3.7139 5.2931 4.2843 49 1 5.0348 5.9463 5.2832 50 1 4.7604 6.5826 3.6438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206914528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:45 Heat of formation + Delta-G solvation = -119.404462 kcal Electronic energy + Delta-G solvation = -30366.741822 eV Core-core repulsion = 26200.487365 eV Total energy + Delta-G solvation = -4166.254457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46697 -40.62372 -39.50851 -38.52536 -36.10702 -35.37364 -33.99281 -33.63050 -33.29560 -32.18825 -30.35804 -29.17162 -28.16276 -26.83140 -25.34359 -23.81800 -22.53762 -21.75199 -21.00615 -20.84176 -20.58047 -19.84678 -18.33129 -17.85744 -17.70166 -17.26973 -16.76775 -16.58925 -16.52177 -16.18487 -15.96793 -15.55796 -15.43810 -15.39266 -14.87826 -14.44776 -14.22775 -14.05036 -13.91775 -13.56436 -13.39646 -13.25335 -13.23271 -13.12438 -13.01753 -12.94866 -12.72689 -12.55890 -12.48123 -12.44365 -12.22724 -12.13884 -12.00708 -11.82468 -11.66688 -11.51557 -11.18387 -10.55405 -10.32736 -10.29380 -10.06206 -9.96359 -9.37857 -8.50179 -5.98815 1.31516 1.33237 1.38265 1.52666 1.72727 2.00538 2.24707 2.25910 2.82795 3.16219 3.23674 3.34859 3.57320 3.67684 3.71027 3.76731 4.01696 4.03954 4.18167 4.21413 4.32934 4.36426 4.41521 4.45709 4.50578 4.58946 4.60740 4.70642 4.71170 4.82177 4.83711 4.85794 4.93230 5.00842 5.13660 5.14587 5.20181 5.32672 5.36933 5.38135 5.63741 5.68002 5.79112 5.81916 5.91257 6.06647 6.56641 6.64247 6.88982 7.09273 7.39441 7.51500 8.07526 8.67621 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.002916 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.622664 B = 9599.804365 C =11982.277600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.192 4.192 3 C 0.177 3.823 4 C -0.152 4.152 5 O -0.561 6.561 6 C -0.157 4.157 7 C 0.505 3.495 8 O -0.565 6.565 9 N -0.710 5.710 10 C 0.143 3.857 11 H 0.075 0.925 12 C 0.052 3.948 13 N -0.506 5.506 14 C 0.046 3.954 15 C 0.436 3.564 16 O -0.616 6.616 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.267 1.267 26 C 0.034 3.966 27 C -0.084 4.084 28 H 0.107 0.893 29 C -0.136 4.136 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.381 0.619 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.414 0.586 40 H 0.064 0.936 41 H 0.005 0.995 42 H 0.064 0.936 43 H 0.117 0.883 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.052 0.948 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 -5.358 15.454 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.209 4.209 5 O -0.368 6.368 6 C -0.196 4.196 7 C 0.293 3.707 8 O -0.443 6.443 9 N -0.363 5.363 10 C 0.036 3.964 11 H 0.093 0.907 12 C -0.077 4.077 13 N -0.230 5.230 14 C -0.085 4.085 15 C 0.223 3.777 16 O -0.502 6.502 17 N -0.210 5.210 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.192 1.192 26 C -0.093 4.093 27 C -0.104 4.104 28 H 0.125 0.875 29 C -0.193 4.193 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.252 0.748 40 H 0.083 0.917 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.128 0.872 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.269 -5.712 14.175 25.385 hybrid contribution 0.555 0.508 -0.816 1.110 sum -19.714 -5.204 13.359 24.376 Atomic orbital electron populations 1.24032 0.95750 1.03149 0.98086 1.23530 0.96987 0.97979 1.02517 1.19808 0.87902 0.84882 0.93834 1.21938 0.99221 1.03011 0.96742 1.86714 1.50658 1.49781 1.49680 1.22414 1.00662 0.95142 1.01413 1.21155 0.79220 0.89152 0.81214 1.90699 1.65800 1.51576 1.36221 1.45960 1.43852 1.20679 1.25761 1.21827 0.90825 0.86639 0.97087 0.90719 1.23070 0.90415 1.00940 0.93307 1.64650 1.05614 1.41794 1.10986 1.22022 0.96827 0.95282 0.94382 1.20806 0.82523 0.87664 0.86674 1.90485 1.56758 1.28607 1.74346 1.41923 1.29619 1.25179 1.24324 1.19659 1.14954 1.07835 1.03676 0.90573 1.26043 0.95813 0.97527 1.01908 1.69674 1.22675 1.22748 1.40980 0.84883 0.78269 0.77956 0.77299 1.19947 1.19631 1.19219 1.23551 0.94881 0.94879 0.95999 1.22314 0.94043 1.00540 0.93460 0.87517 1.21736 0.98553 0.97250 1.01776 0.86512 0.87825 0.85245 0.90705 0.92814 0.92438 0.76976 0.86265 0.85196 0.74843 0.91716 0.97633 0.91781 0.86492 0.77009 0.91242 0.92936 0.87249 0.91830 0.89937 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 13.93 67.79 0.94 -1.22 16 2 C -0.19 -2.83 8.77 25.65 0.22 -2.61 16 3 C 0.18 3.64 0.94 -11.54 -0.01 3.62 16 4 C -0.15 -4.16 8.50 71.98 0.61 -3.55 16 5 O -0.56 -12.99 10.85 -131.54 -1.43 -14.42 16 6 C -0.16 -2.64 4.93 29.85 0.15 -2.49 16 7 C 0.50 13.18 7.39 87.66 0.65 13.83 16 8 O -0.56 -20.67 12.63 14.41 0.18 -20.48 16 9 N -0.71 -15.96 5.02 -438.35 -2.20 -18.16 16 10 C 0.14 3.82 2.89 45.87 0.13 3.95 16 11 H 0.07 2.27 7.31 -2.39 -0.02 2.26 16 12 C 0.05 1.93 4.87 86.41 0.42 2.35 16 13 N -0.51 -16.67 5.26 -886.96 -4.67 -21.34 16 14 C 0.05 1.68 5.49 85.56 0.47 2.15 16 15 C 0.44 21.73 7.36 87.66 0.64 22.37 16 16 O -0.62 -35.19 13.37 -3.09 -0.04 -35.23 16 17 N -0.57 -30.62 5.29 -306.98 -1.62 -32.24 16 18 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 22 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.03 0.75 6.00 86.65 0.52 1.27 16 27 C -0.08 -1.55 3.37 -9.59 -0.03 -1.58 16 28 H 0.11 1.61 7.75 -2.39 -0.02 1.59 16 29 C -0.14 -1.88 9.16 71.98 0.66 -1.22 16 30 H 0.12 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.10 1.30 6.41 -2.91 -0.02 1.28 16 32 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.06 2.05 5.51 -2.39 -0.01 2.04 16 36 H 0.38 5.47 8.05 -74.06 -0.60 4.87 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.41 6.42 8.36 -92.71 -0.78 5.64 16 40 H 0.06 2.92 6.54 -2.39 -0.02 2.90 16 41 H 0.01 0.23 7.59 -2.39 -0.02 0.21 16 42 H 0.06 2.15 7.89 -2.39 -0.02 2.13 16 43 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 45 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.05 1.12 7.73 -2.38 -0.02 1.10 16 47 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -81.21 400.97 -1.94 -83.15 By element: Atomic # 1 Polarization: 46.15 SS G_CDS: -1.13 Total: 45.02 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.66 Total: 17.94 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -8.21 Total: -122.28 kcal Atomic # 8 Polarization: -68.85 SS G_CDS: -1.29 Total: -70.13 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -81.21 -1.94 -83.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206914528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.256 kcal (2) G-P(sol) polarization free energy of solvation -81.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds