Wall clock time and date at job start Tue Mar 31 2020 23:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00287 * 2 1 4 4 H 1.08999 * 109.47218 * 329.37342 * 3 2 1 5 5 C 1.50706 * 109.47102 * 89.36842 * 3 2 1 6 6 O 1.21282 * 119.99825 * 5.00666 * 5 3 2 7 7 N 1.34774 * 120.00063 * 184.99871 * 5 3 2 8 8 C 1.46500 * 120.00120 * 180.02562 * 7 5 3 9 9 H 1.09002 * 110.35281 * 35.68776 * 8 7 5 10 10 C 1.53992 * 110.30670 * 273.54853 * 8 7 5 11 11 N 1.47899 * 107.06040 * 242.30742 * 10 8 7 12 12 C 1.46897 * 111.00382 * 214.15607 * 11 10 8 13 13 C 1.50694 * 109.47410 * 176.65029 * 12 11 10 14 14 O 1.21295 * 120.00051 * 5.88928 * 13 12 11 15 15 N 1.34783 * 120.00088 * 185.88720 * 13 12 11 16 16 C 1.37104 * 119.99942 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99675 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99801 * 180.27508 * 16 15 13 19 19 N 1.31411 * 119.99901 * 179.72172 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 359.72294 * 18 16 15 21 21 H 1.48498 * 109.46918 * 90.00444 * 20 18 16 22 22 H 1.48504 * 109.46909 * 210.00098 * 20 18 16 23 23 H 1.48492 * 109.47241 * 330.00187 * 20 18 16 24 24 C 1.48531 * 105.81867 * 334.66879 * 11 10 8 25 25 C 1.54596 * 110.31068 * 157.83423 * 8 7 5 26 26 H 1.08998 * 110.72154 * 22.50948 * 25 8 7 27 27 C 1.53004 * 110.72019 * 259.23122 * 25 8 7 28 28 C 1.52997 * 109.47389 * 209.37300 * 3 2 1 29 29 C 1.53001 * 117.50213 * 127.31865 * 28 3 2 30 30 C 1.52993 * 60.00048 * 252.50932 * 29 28 3 31 31 H 1.09002 * 109.46951 * 184.72347 * 1 2 3 32 32 H 1.08999 * 109.47096 * 304.72214 * 1 2 3 33 33 H 1.08993 * 109.47135 * 64.72264 * 1 2 3 34 34 H 0.97007 * 120.00133 * 0.02562 * 7 5 3 35 35 H 1.08999 * 109.92097 * 122.95070 * 10 8 7 36 36 H 1.09002 * 110.08360 * 1.75491 * 10 8 7 37 37 H 1.09001 * 109.47185 * 56.64979 * 12 11 10 38 38 H 1.09003 * 109.47365 * 296.65332 * 12 11 10 39 39 H 0.96993 * 119.99795 * 359.97438 * 15 13 12 40 40 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.66802 * 157.64102 * 24 11 10 42 42 H 1.08993 * 110.67297 * 280.77246 * 24 11 10 43 43 H 1.08993 * 109.47088 * 59.99760 * 27 25 8 44 44 H 1.09001 * 109.46831 * 180.02562 * 27 25 8 45 45 H 1.08997 * 109.46804 * 299.99535 * 27 25 8 46 46 H 1.09002 * 115.54837 * 273.02478 * 28 3 2 47 47 H 1.08995 * 117.49668 * 0.02562 * 29 28 3 48 48 H 1.08999 * 117.50005 * 145.01629 * 29 28 3 49 49 H 1.08996 * 117.50287 * 252.50915 * 30 29 28 50 50 H 1.09002 * 117.50102 * 107.49012 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3503 1.9970 -0.5235 5 6 2.2003 1.7707 1.4208 6 8 1.9557 1.0210 2.3422 7 7 2.6422 3.0198 1.6674 8 6 2.8275 3.4719 3.0485 9 1 3.1844 2.6516 3.6713 10 6 1.5074 4.0331 3.6088 11 7 1.7413 5.4590 3.9240 12 6 0.9718 5.8700 5.1059 13 6 1.2978 7.3018 5.4447 14 8 2.0092 7.9523 4.7085 15 7 0.7988 7.8595 6.5656 16 6 1.0949 9.1623 6.8735 17 1 1.7284 9.7414 6.2180 18 6 0.5851 9.7354 8.0321 19 7 0.8734 10.9825 8.3300 20 14 -0.5100 8.7334 9.1661 21 1 0.3278 8.0378 10.1758 22 1 -1.4675 9.6361 9.8544 23 1 -1.2608 7.7299 8.3697 24 6 3.2008 5.5856 4.1687 25 6 3.8219 4.6546 3.0972 26 1 3.8711 5.1571 2.1312 27 6 5.2091 4.1779 3.5324 28 6 3.3661 1.2600 -0.7075 29 6 3.6057 2.2602 -1.8402 30 6 3.3893 0.7798 -2.1600 31 1 -0.3633 -1.0242 0.0846 32 1 -0.3633 0.5854 0.8447 33 1 -0.3633 0.4388 -0.9292 34 1 2.8376 3.6195 0.9304 35 1 1.2290 3.4935 4.5140 36 1 0.7163 3.9422 2.8645 37 1 1.2307 5.2293 5.9489 38 1 -0.0938 5.7801 4.8951 39 1 0.2296 7.3394 7.1541 40 1 0.5173 11.3827 9.1385 41 1 3.5280 6.6147 4.0204 42 1 3.4542 5.2410 5.1712 43 1 5.5778 3.4370 2.8232 44 1 5.8927 5.0265 3.5602 45 1 5.1449 3.7310 4.5245 46 1 4.2166 0.9993 -0.0776 47 1 2.7977 2.9509 -2.0811 48 1 4.6140 2.6579 -1.9556 49 1 4.2551 0.2034 -2.4857 50 1 2.4386 0.4962 -2.6116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206925598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:59 Heat of formation + Delta-G solvation = -74.060321 kcal Electronic energy + Delta-G solvation = -30060.934722 eV Core-core repulsion = 25896.646534 eV Total energy + Delta-G solvation = -4164.288188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65495 -39.44694 -38.25236 -37.52078 -36.72889 -34.57950 -33.86070 -32.75221 -31.66819 -29.89668 -28.59400 -27.23485 -26.30104 -25.35673 -23.79422 -22.80196 -22.03973 -21.26584 -20.52402 -20.25564 -19.38241 -18.31287 -17.88313 -17.27711 -16.58912 -16.18674 -15.89305 -15.44464 -15.32714 -15.02157 -14.88202 -14.72775 -14.39808 -14.13122 -13.86301 -13.45726 -13.38354 -13.16441 -13.10209 -12.69190 -12.56215 -12.37688 -12.04309 -12.01780 -11.95117 -11.84814 -11.69324 -11.50124 -11.33434 -11.13558 -11.07221 -10.90210 -10.80268 -10.67168 -10.60194 -10.58737 -9.99269 -9.56689 -9.51386 -9.25926 -8.56027 -8.21458 -8.08178 -6.32798 -3.84166 2.33071 2.73320 3.02087 3.04679 3.05995 3.14309 3.71577 3.75216 3.97463 4.09166 4.15304 4.32172 4.40755 4.46015 4.55847 4.57954 4.70677 4.75775 4.89554 5.01756 5.05573 5.14743 5.16365 5.20252 5.21511 5.35134 5.38538 5.39674 5.44066 5.54654 5.63228 5.66354 5.68373 5.69513 5.76097 5.78465 5.84461 5.92479 6.00610 6.14312 6.37990 6.44488 6.62589 7.05300 7.10277 7.30489 7.56646 8.00199 8.12449 8.58260 8.93264 9.40670 9.81006 10.80218 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.002194 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.529120 B =12756.171798 C =13398.594552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.105 3.895 4 H 0.086 0.914 5 C 0.493 3.507 6 O -0.526 6.526 7 N -0.712 5.712 8 C 0.140 3.860 9 H 0.094 0.906 10 C 0.025 3.975 11 N -0.492 5.492 12 C 0.033 3.967 13 C 0.452 3.548 14 O -0.561 6.561 15 N -0.590 5.590 16 C -0.304 4.304 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.043 3.957 25 C -0.101 4.101 26 H 0.089 0.911 27 C -0.142 4.142 28 C -0.156 4.156 29 C -0.171 4.171 30 C -0.158 4.158 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.403 0.597 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -21.274 -17.881 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.043 3.957 4 H 0.104 0.896 5 C 0.278 3.722 6 O -0.401 6.401 7 N -0.366 5.366 8 C 0.035 3.965 9 H 0.112 0.888 10 C -0.105 4.105 11 N -0.216 5.216 12 C -0.099 4.099 13 C 0.238 3.762 14 O -0.443 6.443 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.138 0.862 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.705 3.295 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.084 4.084 25 C -0.120 4.120 26 H 0.107 0.893 27 C -0.200 4.200 28 C -0.175 4.175 29 C -0.208 4.208 30 C -0.195 4.195 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.237 0.763 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.336 -21.038 -17.976 27.872 hybrid contribution -1.007 -0.653 1.565 1.972 sum 2.329 -21.691 -16.411 27.299 Atomic orbital electron populations 1.22879 0.80513 1.03421 0.99993 1.88010 1.20008 1.24708 1.94361 1.21525 0.94978 0.86960 0.92200 0.89616 1.21254 0.77188 0.81816 0.91920 1.90722 1.49338 1.54180 1.45870 1.46105 1.67593 1.14154 1.08722 1.21940 0.94993 0.96851 0.82754 0.88759 1.23340 0.97683 0.88942 1.00488 1.64561 1.06150 1.16508 1.34342 1.22131 0.99722 0.95999 0.92016 1.19583 0.85311 0.88167 0.83123 1.90521 1.40044 1.63549 1.50152 1.42219 1.45947 1.13269 1.21537 1.19419 1.29956 0.86206 1.07688 0.86240 1.25038 0.97947 0.95893 0.97289 1.69617 1.44500 1.12015 1.25947 0.86682 0.81022 0.80255 0.81516 1.19648 1.20141 1.19478 1.23432 0.87094 1.01999 0.95914 1.22398 0.94173 0.94595 1.00857 0.89260 1.21763 0.95655 1.01298 1.01261 1.22093 0.96507 1.07070 0.91809 1.23130 1.03736 0.92900 1.01016 1.22851 1.03732 0.96666 0.96287 0.89127 0.93547 0.93958 0.76251 0.93269 0.90235 0.93272 0.89045 0.79711 0.91605 0.86988 0.93973 0.92585 0.91776 0.92496 0.86802 0.88252 0.87827 0.88291 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.79 101.05 1.09 1.32 16 2 O -0.35 -3.73 9.78 -55.09 -0.54 -4.27 16 3 C 0.11 0.92 2.72 -27.88 -0.08 0.84 16 4 H 0.09 0.58 7.58 -51.93 -0.39 0.18 16 5 C 0.49 5.55 7.06 -10.98 -0.08 5.47 16 6 O -0.53 -8.12 16.21 -14.30 -0.23 -8.35 16 7 N -0.71 -6.86 4.99 -52.49 -0.26 -7.12 16 8 C 0.14 1.61 2.87 -66.57 -0.19 1.41 16 9 H 0.09 1.19 7.36 -51.93 -0.38 0.81 16 10 C 0.02 0.33 6.49 -2.76 -0.02 0.31 16 11 N -0.49 -7.79 5.11 -231.90 -1.19 -8.98 16 12 C 0.03 0.57 5.30 -4.98 -0.03 0.54 16 13 C 0.45 10.16 7.42 -10.99 -0.08 10.08 16 14 O -0.56 -14.54 13.86 5.54 0.08 -14.47 16 15 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 16 C -0.30 -8.52 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 20 Si 0.88 19.38 27.73 -169.99 -4.71 14.66 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 24 C 0.04 0.66 5.03 -1.90 -0.01 0.65 16 25 C -0.10 -1.14 3.36 -88.76 -0.30 -1.44 16 26 H 0.09 0.95 7.74 -51.93 -0.40 0.55 16 27 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 28 C -0.16 -1.11 5.36 -90.62 -0.49 -1.59 16 29 C -0.17 -0.84 10.18 -26.73 -0.27 -1.12 16 30 C -0.16 -0.92 10.13 -26.74 -0.27 -1.19 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 2.99 8.35 -40.82 -0.34 2.65 16 35 H 0.05 0.65 7.68 -51.93 -0.40 0.25 16 36 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.37 7.77 5.77 -40.82 -0.24 7.54 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.11 2.05 6.43 -51.93 -0.33 1.72 16 42 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 46 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 47 H 0.10 0.41 8.04 -51.93 -0.42 -0.01 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -34.53 406.87 -8.97 -43.50 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.34 Total: 11.19 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -0.63 Total: 6.60 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.73 Total: -54.99 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.69 Total: -27.08 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.53 -8.97 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206925598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.564 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds