Wall clock time and date at job start Tue Mar 31 2020 23:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00287 * 2 1 4 4 H 1.08999 * 109.47218 * 329.37342 * 3 2 1 5 5 C 1.50706 * 109.47102 * 89.36842 * 3 2 1 6 6 O 1.21282 * 119.99825 * 5.00666 * 5 3 2 7 7 N 1.34774 * 120.00063 * 184.99871 * 5 3 2 8 8 C 1.46500 * 120.00120 * 180.02562 * 7 5 3 9 9 H 1.09002 * 110.35281 * 35.68776 * 8 7 5 10 10 C 1.53992 * 110.30670 * 273.54853 * 8 7 5 11 11 N 1.47899 * 107.06040 * 242.30742 * 10 8 7 12 12 C 1.46897 * 111.00382 * 214.15607 * 11 10 8 13 13 C 1.50694 * 109.47410 * 176.65029 * 12 11 10 14 14 O 1.21295 * 120.00051 * 5.88928 * 13 12 11 15 15 N 1.34783 * 120.00088 * 185.88720 * 13 12 11 16 16 C 1.37104 * 119.99942 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99675 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99801 * 180.27508 * 16 15 13 19 19 N 1.31411 * 119.99901 * 179.72172 * 18 16 15 20 20 Si 1.86799 * 119.99999 * 359.72294 * 18 16 15 21 21 H 1.48498 * 109.46918 * 90.00444 * 20 18 16 22 22 H 1.48504 * 109.46909 * 210.00098 * 20 18 16 23 23 H 1.48492 * 109.47241 * 330.00187 * 20 18 16 24 24 C 1.48531 * 105.81867 * 334.66879 * 11 10 8 25 25 C 1.54596 * 110.31068 * 157.83423 * 8 7 5 26 26 H 1.08998 * 110.72154 * 22.50948 * 25 8 7 27 27 C 1.53004 * 110.72019 * 259.23122 * 25 8 7 28 28 C 1.52997 * 109.47389 * 209.37300 * 3 2 1 29 29 C 1.53001 * 117.50213 * 127.31865 * 28 3 2 30 30 C 1.52993 * 60.00048 * 252.50932 * 29 28 3 31 31 H 1.09002 * 109.46951 * 184.72347 * 1 2 3 32 32 H 1.08999 * 109.47096 * 304.72214 * 1 2 3 33 33 H 1.08993 * 109.47135 * 64.72264 * 1 2 3 34 34 H 0.97007 * 120.00133 * 0.02562 * 7 5 3 35 35 H 1.08999 * 109.92097 * 122.95070 * 10 8 7 36 36 H 1.09002 * 110.08360 * 1.75491 * 10 8 7 37 37 H 1.09001 * 109.47185 * 56.64979 * 12 11 10 38 38 H 1.09003 * 109.47365 * 296.65332 * 12 11 10 39 39 H 0.96993 * 119.99795 * 359.97438 * 15 13 12 40 40 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.66802 * 157.64102 * 24 11 10 42 42 H 1.08993 * 110.67297 * 280.77246 * 24 11 10 43 43 H 1.08993 * 109.47088 * 59.99760 * 27 25 8 44 44 H 1.09001 * 109.46831 * 180.02562 * 27 25 8 45 45 H 1.08997 * 109.46804 * 299.99535 * 27 25 8 46 46 H 1.09002 * 115.54837 * 273.02478 * 28 3 2 47 47 H 1.08995 * 117.49668 * 0.02562 * 29 28 3 48 48 H 1.08999 * 117.50005 * 145.01629 * 29 28 3 49 49 H 1.08996 * 117.50287 * 252.50915 * 30 29 28 50 50 H 1.09002 * 117.50102 * 107.49012 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3503 1.9970 -0.5235 5 6 2.2003 1.7707 1.4208 6 8 1.9557 1.0210 2.3422 7 7 2.6422 3.0198 1.6674 8 6 2.8275 3.4719 3.0485 9 1 3.1844 2.6516 3.6713 10 6 1.5074 4.0331 3.6088 11 7 1.7413 5.4590 3.9240 12 6 0.9718 5.8700 5.1059 13 6 1.2978 7.3018 5.4447 14 8 2.0092 7.9523 4.7085 15 7 0.7988 7.8595 6.5656 16 6 1.0949 9.1623 6.8735 17 1 1.7284 9.7414 6.2180 18 6 0.5851 9.7354 8.0321 19 7 0.8734 10.9825 8.3300 20 14 -0.5100 8.7334 9.1661 21 1 0.3278 8.0378 10.1758 22 1 -1.4675 9.6361 9.8544 23 1 -1.2608 7.7299 8.3697 24 6 3.2008 5.5856 4.1687 25 6 3.8219 4.6546 3.0972 26 1 3.8711 5.1571 2.1312 27 6 5.2091 4.1779 3.5324 28 6 3.3661 1.2600 -0.7075 29 6 3.6057 2.2602 -1.8402 30 6 3.3893 0.7798 -2.1600 31 1 -0.3633 -1.0242 0.0846 32 1 -0.3633 0.5854 0.8447 33 1 -0.3633 0.4388 -0.9292 34 1 2.8376 3.6195 0.9304 35 1 1.2290 3.4935 4.5140 36 1 0.7163 3.9422 2.8645 37 1 1.2307 5.2293 5.9489 38 1 -0.0938 5.7801 4.8951 39 1 0.2296 7.3394 7.1541 40 1 0.5173 11.3827 9.1385 41 1 3.5280 6.6147 4.0204 42 1 3.4542 5.2410 5.1712 43 1 5.5778 3.4370 2.8232 44 1 5.8927 5.0265 3.5602 45 1 5.1449 3.7310 4.5245 46 1 4.2166 0.9993 -0.0776 47 1 2.7977 2.9509 -2.0811 48 1 4.6140 2.6579 -1.9556 49 1 4.2551 0.2034 -2.4857 50 1 2.4386 0.4962 -2.6116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206925598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:58 Heat of formation + Delta-G solvation = -100.658057 kcal Electronic energy + Delta-G solvation = -30062.088086 eV Core-core repulsion = 25896.646534 eV Total energy + Delta-G solvation = -4165.441552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56196 -40.69436 -39.58201 -38.51460 -37.30541 -36.10841 -35.40322 -33.87877 -33.62344 -30.78592 -29.64957 -28.37769 -27.08408 -26.78314 -25.22083 -23.18935 -22.94926 -22.09338 -21.51509 -21.28655 -21.09976 -20.21045 -18.66538 -18.14503 -17.81754 -17.21059 -16.88637 -16.77798 -16.42766 -16.30815 -16.05365 -15.68723 -15.33020 -15.31621 -15.04611 -14.78916 -14.47502 -14.42787 -14.14189 -14.01232 -13.96170 -13.52139 -13.40987 -13.10954 -12.92891 -12.64587 -12.58474 -12.43391 -12.39782 -12.33395 -12.15586 -11.99722 -11.89408 -11.74706 -11.70478 -11.47056 -11.37361 -11.12707 -10.41900 -10.31776 -10.24951 -10.12036 -9.40304 -8.42174 -6.02531 1.29189 1.33433 1.42487 1.48762 1.92541 1.96699 2.21308 2.47656 2.61194 3.13695 3.16347 3.23162 3.43530 3.56283 3.61182 3.80217 3.86438 4.00077 4.06847 4.10791 4.17092 4.20339 4.30258 4.33516 4.37172 4.47034 4.50569 4.51347 4.58138 4.64399 4.77446 4.80234 4.82206 4.85669 4.91265 5.03579 5.05071 5.18414 5.21395 5.27751 5.30096 5.48731 5.51402 5.82435 5.87023 5.97961 5.99268 6.52440 6.58173 6.87015 7.18126 7.38034 7.94004 8.75171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.002194 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.529120 B =12756.171798 C =13398.594552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.108 3.892 4 H 0.110 0.890 5 C 0.494 3.506 6 O -0.572 6.572 7 N -0.699 5.699 8 C 0.148 3.852 9 H 0.087 0.913 10 C 0.029 3.971 11 N -0.507 5.507 12 C 0.042 3.958 13 C 0.453 3.547 14 O -0.601 6.601 15 N -0.592 5.592 16 C -0.324 4.324 17 H 0.059 0.941 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.234 1.234 24 C 0.042 3.958 25 C -0.086 4.086 26 H 0.099 0.901 27 C -0.138 4.138 28 C -0.172 4.172 29 C -0.153 4.153 30 C -0.160 4.160 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.388 0.612 40 H 0.279 0.721 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 -23.846 -18.679 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.047 3.953 4 H 0.127 0.873 5 C 0.280 3.720 6 O -0.450 6.450 7 N -0.352 5.352 8 C 0.042 3.958 9 H 0.105 0.895 10 C -0.099 4.099 11 N -0.231 5.231 12 C -0.089 4.089 13 C 0.241 3.759 14 O -0.485 6.485 15 N -0.234 5.234 16 C -0.454 4.454 17 H 0.077 0.923 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.782 3.218 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.157 1.157 24 C -0.086 4.086 25 C -0.106 4.106 26 H 0.117 0.883 27 C -0.196 4.196 28 C -0.191 4.191 29 C -0.189 4.189 30 C -0.197 4.197 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.120 0.880 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.122 0.878 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.159 -23.616 -18.820 30.275 hybrid contribution -0.552 0.204 1.700 1.799 sum 1.607 -23.412 -17.120 29.048 Atomic orbital electron populations 1.23008 0.79543 1.04004 1.00623 1.87982 1.21266 1.25948 1.94327 1.21633 0.96245 0.86780 0.90632 0.87268 1.21784 0.76045 0.81506 0.92636 1.90700 1.51479 1.55424 1.47432 1.45965 1.66814 1.14031 1.08420 1.21736 0.94094 0.96363 0.83602 0.89504 1.23339 0.98595 0.87161 1.00850 1.64522 1.06237 1.18480 1.33873 1.22077 1.01294 0.91928 0.93620 1.20677 0.83340 0.90128 0.81772 1.90516 1.41370 1.65318 1.51275 1.42052 1.46881 1.11889 1.22578 1.18991 1.30531 0.88049 1.07799 0.92325 1.26068 0.99347 0.97139 0.98764 1.69792 1.46078 1.14454 1.27002 0.85410 0.78627 0.78978 0.78822 1.18273 1.19951 1.15721 1.23311 0.87375 1.00752 0.97178 1.22293 0.94708 0.93623 0.99961 0.88330 1.21742 0.94593 1.01697 1.01571 1.22022 0.95238 1.09515 0.92283 1.23239 1.04777 0.92508 0.98422 1.22929 1.04086 0.97667 0.94987 0.88423 0.94851 0.91589 0.74681 0.92882 0.89849 0.90642 0.86569 0.77666 0.91156 0.90756 0.94269 0.90929 0.91687 0.92745 0.87959 0.86955 0.86849 0.87850 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.79 113.37 1.22 1.58 16 2 O -0.38 -7.49 9.78 -129.99 -1.27 -8.76 16 3 C 0.11 1.69 2.72 29.85 0.08 1.77 16 4 H 0.11 1.15 7.58 -2.39 -0.02 1.13 16 5 C 0.49 10.39 7.06 87.66 0.62 11.01 16 6 O -0.57 -17.27 16.21 15.95 0.26 -17.01 16 7 N -0.70 -12.05 4.99 -438.37 -2.19 -14.24 16 8 C 0.15 3.14 2.87 45.87 0.13 3.28 16 9 H 0.09 2.06 7.36 -2.39 -0.02 2.04 16 10 C 0.03 0.72 6.49 86.45 0.56 1.28 16 11 N -0.51 -15.42 5.11 -887.60 -4.54 -19.96 16 12 C 0.04 1.36 5.30 85.56 0.45 1.81 16 13 C 0.45 20.44 7.42 87.65 0.65 21.09 16 14 O -0.60 -32.44 13.86 -3.08 -0.04 -32.49 16 15 N -0.59 -28.02 5.09 -306.98 -1.56 -29.58 16 16 C -0.32 -18.91 10.16 84.04 0.85 -18.05 16 17 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 19 N -0.93 -56.06 13.96 21.66 0.30 -55.76 16 20 Si 0.96 39.04 27.73 68.60 1.90 40.94 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 24 C 0.04 1.26 5.03 86.65 0.44 1.70 16 25 C -0.09 -1.84 3.36 -9.59 -0.03 -1.87 16 26 H 0.10 1.93 7.74 -2.39 -0.02 1.91 16 27 C -0.14 -2.49 9.16 71.98 0.66 -1.83 16 28 C -0.17 -2.10 5.36 -10.79 -0.06 -2.16 16 29 C -0.15 -1.06 10.18 30.59 0.31 -0.75 16 30 C -0.16 -1.50 10.13 30.59 0.31 -1.19 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.03 0.56 8.11 -2.39 -0.02 0.54 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.42 5.06 8.35 -92.70 -0.77 4.29 16 35 H 0.05 1.27 7.68 -2.39 -0.02 1.26 16 36 H 0.08 1.99 7.93 -2.39 -0.02 1.97 16 37 H 0.08 2.07 7.98 -2.39 -0.02 2.06 16 38 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.39 15.39 5.77 -92.71 -0.53 14.86 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.07 2.84 6.43 -2.39 -0.02 2.82 16 42 H 0.04 1.18 7.88 -2.39 -0.02 1.16 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 46 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 47 H 0.11 0.51 8.04 -2.39 -0.02 0.49 16 48 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -80.60 406.87 -0.88 -81.49 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.41 Total: 38.05 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 6.67 Total: 17.32 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -7.98 Total: -119.54 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -1.05 Total: -58.26 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.94 kcal Total: -80.60 -0.88 -81.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206925598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.172 kcal (2) G-P(sol) polarization free energy of solvation -80.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds