Wall clock time and date at job start Tue Mar 31 2020 23:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.07995 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47464 * 119.99742 * 10 8 6 13 13 H 1.48496 * 109.47378 * 240.00268 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00422 * 81.04917 * 15 14 5 17 17 N 1.46496 * 111.00674 * 204.86080 * 15 14 5 18 18 C 1.34776 * 120.00084 * 273.55347 * 17 15 14 19 19 O 1.21283 * 120.00049 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99896 * 179.97438 * 18 17 15 21 21 C 1.53009 * 109.46800 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.46812 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.87359 * 54.29923 * 22 21 20 24 24 C 1.54106 * 109.87847 * 175.30822 * 22 21 20 25 25 C 1.54816 * 104.18734 * 121.45347 * 24 22 21 26 26 C 1.54999 * 102.09311 * 20.88059 * 25 24 22 27 27 H 1.08998 * 110.61398 * 81.47885 * 26 25 24 28 28 C 1.50697 * 110.61521 * 204.32091 * 26 25 24 29 29 N 1.34778 * 119.99742 * 294.99626 * 28 26 25 30 30 O 1.21278 * 120.00233 * 115.00220 * 28 26 25 31 31 O 1.43749 * 109.87894 * 293.29161 * 22 21 20 32 32 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 33 33 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 34 34 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 35 35 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 36 36 H 1.08999 * 109.88411 * 99.95540 * 4 2 1 37 37 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 39 39 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 40 40 H 0.97000 * 120.00071 * 93.54813 * 17 15 14 41 41 H 1.08991 * 109.47292 * 299.99263 * 20 18 17 42 42 H 1.09002 * 109.47528 * 59.99890 * 20 18 17 43 43 H 1.09003 * 109.47302 * 299.99682 * 21 20 18 44 44 H 1.08996 * 109.47056 * 60.00151 * 21 20 18 45 45 H 1.08998 * 110.48793 * 240.12816 * 24 22 21 46 46 H 1.08996 * 110.48502 * 2.77825 * 24 22 21 47 47 H 1.09001 * 110.90292 * 139.08129 * 25 24 22 48 48 H 1.09004 * 110.90527 * 262.68067 * 25 24 22 49 49 H 0.96994 * 120.00456 * 0.02562 * 29 28 26 50 50 H 0.96997 * 119.99929 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 3.7759 -2.5515 -2.5353 8 6 5.0977 -3.0518 -0.9245 9 7 5.3893 -2.8615 0.3449 10 14 6.1403 -4.2055 -1.9595 11 1 5.6068 -4.2461 -3.3449 12 1 7.5430 -3.7186 -1.9829 13 1 6.0994 -5.5694 -1.3738 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4471 -1.6529 1.4390 17 7 2.2174 0.0728 2.3885 18 6 2.3113 -0.4693 3.6189 19 8 2.2807 -1.6741 3.7547 20 6 2.4543 0.4217 4.8259 21 6 2.5391 -0.4391 6.0880 22 6 2.6836 0.4654 7.3134 23 1 1.8750 1.1961 7.3321 24 6 2.6518 -0.3843 8.5986 25 6 4.0011 -0.0748 9.2917 26 6 4.3959 1.2772 8.6446 27 1 3.8781 2.1024 9.1336 28 6 5.8881 1.4788 8.7051 29 7 6.5022 1.6128 9.8973 30 8 6.5364 1.5205 7.6810 31 8 3.9519 1.1409 7.2755 32 1 -0.3634 0.4643 0.9168 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0563 35 1 1.3191 -1.4773 -1.5770 36 1 2.3776 -0.1016 -1.9963 37 1 6.1459 -3.3201 0.7426 38 1 4.1929 -0.4409 0.8030 39 1 3.8001 -2.1352 1.2232 40 1 2.2416 1.0364 2.2799 41 1 3.3612 1.0187 4.7314 42 1 1.5899 1.0822 4.8944 43 1 1.6318 -1.0359 6.1824 44 1 3.4032 -1.0999 6.0197 45 1 1.8188 -0.0838 9.2341 46 1 2.5830 -1.4441 8.3536 47 1 3.8696 0.0329 10.3683 48 1 4.7396 -0.8442 9.0663 49 1 5.9838 1.5792 10.7164 50 1 7.4626 1.7429 9.9363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208044202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:26 Heat of formation + Delta-G solvation = -104.366021 kcal Electronic energy + Delta-G solvation = -29916.633484 eV Core-core repulsion = 25751.031143 eV Total energy + Delta-G solvation = -4165.602341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.55673 -39.41801 -38.63346 -37.41156 -34.16520 -33.79322 -33.47702 -32.52894 -32.28701 -30.28207 -29.34494 -27.56678 -25.63300 -25.09599 -23.53929 -22.58270 -21.17472 -20.86214 -20.36588 -19.93021 -19.24553 -18.01992 -17.30053 -16.90964 -16.79895 -16.30068 -15.97516 -15.67371 -15.02616 -14.85607 -14.78866 -14.63137 -13.84886 -13.79258 -13.63902 -13.38403 -13.03306 -12.82252 -12.80694 -12.40565 -12.31576 -12.14763 -12.08370 -11.88035 -11.63305 -11.29554 -11.17526 -11.07465 -10.97164 -10.81841 -10.72310 -10.51604 -10.27198 -10.24218 -10.05381 -9.89361 -9.85204 -9.69222 -9.62959 -9.26591 -8.56477 -8.30774 -6.74516 -5.53237 -2.97698 2.29301 2.79180 3.17840 3.47362 3.51390 3.55206 3.65148 3.72432 4.10322 4.34445 4.48307 4.56535 4.61391 4.71927 4.86971 4.96658 5.12938 5.17719 5.27458 5.31677 5.37477 5.43117 5.47441 5.52350 5.54706 5.62093 5.75080 5.78405 5.84575 6.02463 6.08162 6.12700 6.22415 6.30185 6.32881 6.38626 6.44164 6.58664 6.59176 6.73279 6.92781 6.95015 7.07001 7.59170 7.70994 7.93681 7.97858 8.08810 8.48879 8.79026 9.30802 9.91974 10.55938 11.49018 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.002519 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.679002 B =11113.183901 C =12670.419628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.604 5.604 6 C -0.226 4.226 7 H 0.079 0.921 8 C -0.011 4.011 9 N -0.915 5.915 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.148 3.852 15 C 0.121 3.879 16 H 0.088 0.912 17 N -0.717 5.717 18 C 0.510 3.490 19 O -0.538 6.538 20 C -0.138 4.138 21 C -0.101 4.101 22 C 0.073 3.927 23 H 0.073 0.927 24 C -0.150 4.150 25 C -0.144 4.144 26 C 0.057 3.943 27 H 0.096 0.904 28 C 0.520 3.480 29 N -0.855 5.855 30 O -0.514 6.514 31 O -0.339 6.339 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.252 0.748 38 H 0.012 0.988 39 H 0.112 0.888 40 H 0.393 0.607 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.400 0.600 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 12.218 23.113 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.331 5.331 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.207 4.207 9 N -0.563 5.563 10 Si 0.745 3.255 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.022 3.978 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.367 5.367 18 C 0.296 3.704 19 O -0.414 6.414 20 C -0.178 4.178 21 C -0.139 4.139 22 C 0.016 3.984 23 H 0.091 0.909 24 C -0.188 4.188 25 C -0.182 4.182 26 C -0.005 4.005 27 H 0.113 0.887 28 C 0.303 3.697 29 N -0.421 5.421 30 O -0.387 6.387 31 O -0.257 6.257 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.130 0.870 40 H 0.226 0.774 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.228 0.772 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.887 11.258 22.202 26.112 hybrid contribution 0.692 0.067 0.028 0.696 sum -7.194 11.325 22.230 25.965 Atomic orbital electron populations 1.21733 0.95039 1.01815 1.00799 1.22418 0.95113 0.99185 0.96419 0.90867 1.21377 0.90269 0.93167 0.93711 1.44476 1.30705 1.50584 1.07293 1.19089 1.06200 1.17243 0.92919 0.90349 1.24839 0.98826 1.00612 0.96383 1.69830 1.29864 1.45958 1.10659 0.86008 0.80077 0.80475 0.78976 1.20553 1.21777 1.21730 1.22228 0.89445 1.01185 0.84939 1.22634 1.00872 0.92276 0.82667 0.89447 1.45905 1.74606 1.09816 1.06379 1.20569 0.76194 0.89214 0.84439 1.90717 1.49374 1.15169 1.86152 1.21621 1.04276 0.98849 0.93041 1.21534 1.04215 0.97019 0.91105 1.22933 0.86248 0.93730 0.95515 0.90879 1.23010 0.97190 1.02339 0.96267 1.23108 0.98328 0.96290 1.00456 1.22966 0.92315 0.99025 0.86147 0.88670 1.20271 0.89621 0.76084 0.83763 1.43738 1.12574 1.77666 1.08125 1.90836 1.66584 1.47482 1.33768 1.89125 1.36124 1.78372 1.22128 0.93130 0.92944 0.92530 0.95531 0.95934 0.93712 0.96988 0.87016 0.77354 0.88288 0.89564 0.89836 0.89975 0.90166 0.89387 0.89483 0.89737 0.77182 0.76338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.17 37.16 0.34 -1.59 16 2 C -0.11 -1.97 3.16 -88.79 -0.28 -2.25 16 3 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 4 C 0.14 3.04 6.86 -2.92 -0.02 3.02 16 5 N -0.60 -16.35 3.40 -169.86 -0.58 -16.92 16 6 C -0.23 -6.62 10.28 -15.06 -0.15 -6.78 16 7 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 9 N -0.92 -28.64 10.09 55.49 0.56 -28.08 16 10 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 C 0.15 3.89 5.58 -2.53 -0.01 3.87 16 15 C 0.12 2.47 2.76 -65.79 -0.18 2.29 16 16 H 0.09 1.96 7.64 -51.92 -0.40 1.57 16 17 N -0.72 -12.12 5.23 -51.73 -0.27 -12.39 16 18 C 0.51 8.97 7.83 -10.99 -0.09 8.89 16 19 O -0.54 -11.89 15.73 5.55 0.09 -11.80 16 20 C -0.14 -1.78 5.61 -27.88 -0.16 -1.93 16 21 C -0.10 -1.24 3.99 -26.73 -0.11 -1.34 16 22 C 0.07 0.69 3.41 -26.16 -0.09 0.60 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 C -0.15 -1.03 6.64 -25.20 -0.17 -1.20 16 25 C -0.14 -0.90 6.57 -24.72 -0.16 -1.06 16 26 C 0.06 0.48 3.76 -26.83 -0.10 0.38 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 C 0.52 5.37 7.48 -10.99 -0.08 5.28 16 29 N -0.85 -4.45 8.86 31.22 0.28 -4.17 16 30 O -0.51 -8.44 17.41 -13.39 -0.23 -8.68 16 31 O -0.34 -4.16 10.13 -54.18 -0.55 -4.71 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.03 0.57 7.78 -51.93 -0.40 0.16 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 3.45 5.86 -51.93 -0.30 3.14 16 40 H 0.39 5.33 8.51 -40.82 -0.35 4.98 16 41 H 0.10 1.34 7.89 -51.93 -0.41 0.93 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.65 7.70 -51.93 -0.40 0.25 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 49 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 50 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -40.16 403.19 -9.44 -49.60 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.43 Total: 5.14 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.36 Total: 7.78 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.01 Total: -61.56 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.69 Total: -25.19 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -40.16 -9.44 -49.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208044202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.763 kcal (2) G-P(sol) polarization free energy of solvation -40.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds