Wall clock time and date at job start Tue Mar 31 2020 23:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.07995 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47464 * 119.99742 * 10 8 6 13 13 H 1.48496 * 109.47378 * 240.00268 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00422 * 81.04917 * 15 14 5 17 17 N 1.46496 * 111.00674 * 204.86080 * 15 14 5 18 18 C 1.34776 * 120.00084 * 273.55347 * 17 15 14 19 19 O 1.21283 * 120.00049 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99896 * 179.97438 * 18 17 15 21 21 C 1.53009 * 109.46800 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.46812 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.87359 * 54.29923 * 22 21 20 24 24 C 1.54106 * 109.87847 * 175.30822 * 22 21 20 25 25 C 1.54816 * 104.18734 * 121.45347 * 24 22 21 26 26 C 1.54999 * 102.09311 * 20.88059 * 25 24 22 27 27 H 1.08998 * 110.61398 * 81.47885 * 26 25 24 28 28 C 1.50697 * 110.61521 * 204.32091 * 26 25 24 29 29 N 1.34778 * 119.99742 * 294.99626 * 28 26 25 30 30 O 1.21278 * 120.00233 * 115.00220 * 28 26 25 31 31 O 1.43749 * 109.87894 * 293.29161 * 22 21 20 32 32 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 33 33 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 34 34 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 35 35 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 36 36 H 1.08999 * 109.88411 * 99.95540 * 4 2 1 37 37 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 39 39 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 40 40 H 0.97000 * 120.00071 * 93.54813 * 17 15 14 41 41 H 1.08991 * 109.47292 * 299.99263 * 20 18 17 42 42 H 1.09002 * 109.47528 * 59.99890 * 20 18 17 43 43 H 1.09003 * 109.47302 * 299.99682 * 21 20 18 44 44 H 1.08996 * 109.47056 * 60.00151 * 21 20 18 45 45 H 1.08998 * 110.48793 * 240.12816 * 24 22 21 46 46 H 1.08996 * 110.48502 * 2.77825 * 24 22 21 47 47 H 1.09001 * 110.90292 * 139.08129 * 25 24 22 48 48 H 1.09004 * 110.90527 * 262.68067 * 25 24 22 49 49 H 0.96994 * 120.00456 * 0.02562 * 29 28 26 50 50 H 0.96997 * 119.99929 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 3.7759 -2.5515 -2.5353 8 6 5.0977 -3.0518 -0.9245 9 7 5.3893 -2.8615 0.3449 10 14 6.1403 -4.2055 -1.9595 11 1 5.6068 -4.2461 -3.3449 12 1 7.5430 -3.7186 -1.9829 13 1 6.0994 -5.5694 -1.3738 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4471 -1.6529 1.4390 17 7 2.2174 0.0728 2.3885 18 6 2.3113 -0.4693 3.6189 19 8 2.2807 -1.6741 3.7547 20 6 2.4543 0.4217 4.8259 21 6 2.5391 -0.4391 6.0880 22 6 2.6836 0.4654 7.3134 23 1 1.8750 1.1961 7.3321 24 6 2.6518 -0.3843 8.5986 25 6 4.0011 -0.0748 9.2917 26 6 4.3959 1.2772 8.6446 27 1 3.8781 2.1024 9.1336 28 6 5.8881 1.4788 8.7051 29 7 6.5022 1.6128 9.8973 30 8 6.5364 1.5205 7.6810 31 8 3.9519 1.1409 7.2755 32 1 -0.3634 0.4643 0.9168 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0563 35 1 1.3191 -1.4773 -1.5770 36 1 2.3776 -0.1016 -1.9963 37 1 6.1459 -3.3201 0.7426 38 1 4.1929 -0.4409 0.8030 39 1 3.8001 -2.1352 1.2232 40 1 2.2416 1.0364 2.2799 41 1 3.3612 1.0187 4.7314 42 1 1.5899 1.0822 4.8944 43 1 1.6318 -1.0359 6.1824 44 1 3.4032 -1.0999 6.0197 45 1 1.8188 -0.0838 9.2341 46 1 2.5830 -1.4441 8.3536 47 1 3.8696 0.0329 10.3683 48 1 4.7396 -0.8442 9.0663 49 1 5.9838 1.5792 10.7164 50 1 7.4626 1.7429 9.9363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208044202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:26 Heat of formation + Delta-G solvation = -137.408067 kcal Electronic energy + Delta-G solvation = -29918.066295 eV Core-core repulsion = 25751.031143 eV Total energy + Delta-G solvation = -4167.035152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32259 -40.88113 -39.53464 -39.05855 -35.64033 -34.92310 -34.50119 -34.21397 -32.92820 -32.17840 -30.37090 -29.16929 -27.42478 -26.19307 -25.10329 -23.50146 -22.23447 -21.81148 -21.56104 -21.53901 -20.74853 -18.94831 -18.65572 -18.07299 -17.87941 -17.40706 -17.20807 -16.96121 -16.78291 -15.95064 -15.69066 -15.62962 -15.51110 -15.30164 -14.49882 -14.44426 -14.41913 -14.37529 -14.10587 -13.99271 -13.73931 -13.38539 -13.09108 -13.00922 -12.88316 -12.84377 -12.63679 -12.61928 -12.17004 -12.05906 -11.99855 -11.88248 -11.85158 -11.66582 -11.57473 -11.39646 -11.05520 -10.81416 -10.77671 -10.73070 -10.58073 -9.95634 -8.93757 -7.79289 -5.27322 1.41107 1.44153 1.53773 1.54621 1.73726 2.18784 2.25675 2.47781 3.08369 3.29603 3.52386 3.64010 3.67823 3.78039 3.89342 3.93519 3.99971 4.03416 4.09099 4.15444 4.22496 4.34195 4.42546 4.53669 4.61135 4.63724 4.65987 4.73158 4.79648 4.87752 4.90351 5.04229 5.05014 5.08524 5.11168 5.17164 5.22894 5.29894 5.35320 5.43969 5.48378 5.65907 5.80058 5.80212 5.95602 6.25462 6.45507 6.67804 7.03447 7.32313 7.39734 7.73558 8.36778 9.20858 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.002519 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.679002 B =11113.183901 C =12670.419628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.096 0.904 4 C 0.132 3.868 5 N -0.629 5.629 6 C -0.238 4.238 7 H 0.089 0.911 8 C -0.076 4.076 9 N -0.951 5.951 10 Si 0.985 3.015 11 H -0.259 1.259 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.065 0.935 17 N -0.705 5.705 18 C 0.502 3.498 19 O -0.590 6.590 20 C -0.124 4.124 21 C -0.101 4.101 22 C 0.074 3.926 23 H 0.105 0.895 24 C -0.148 4.148 25 C -0.137 4.137 26 C 0.053 3.947 27 H 0.136 0.864 28 C 0.512 3.488 29 N -0.827 5.827 30 O -0.591 6.591 31 O -0.382 6.382 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.243 0.757 38 H -0.017 1.017 39 H 0.058 0.942 40 H 0.414 0.586 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.132 0.868 48 H 0.059 0.941 49 H 0.422 0.578 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 14.523 24.566 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 H 0.114 0.886 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.367 4.367 7 H 0.106 0.894 8 C -0.268 4.268 9 N -0.601 5.601 10 Si 0.813 3.187 11 H -0.183 1.183 12 H -0.219 1.219 13 H -0.221 1.221 14 C 0.029 3.971 15 C 0.031 3.969 16 H 0.083 0.917 17 N -0.356 5.356 18 C 0.291 3.709 19 O -0.470 6.470 20 C -0.164 4.164 21 C -0.139 4.139 22 C 0.017 3.983 23 H 0.122 0.878 24 C -0.185 4.185 25 C -0.175 4.175 26 C -0.008 4.008 27 H 0.153 0.847 28 C 0.297 3.703 29 N -0.393 5.393 30 O -0.470 6.470 31 O -0.302 6.302 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.001 0.999 39 H 0.077 0.923 40 H 0.251 0.749 41 H 0.111 0.889 42 H 0.151 0.849 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.135 0.865 46 H 0.093 0.907 47 H 0.150 0.850 48 H 0.077 0.923 49 H 0.254 0.746 50 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.571 13.625 23.707 29.315 hybrid contribution 1.533 -0.648 -0.387 1.709 sum -9.039 12.977 23.319 28.176 Atomic orbital electron populations 1.21684 0.91593 1.01996 1.03222 1.22372 0.97704 0.98903 0.92273 0.88588 1.21673 0.88553 0.93361 0.95740 1.44805 1.32008 1.51046 1.07650 1.19557 1.06349 1.17187 0.93620 0.89371 1.25808 1.00600 1.02772 0.97595 1.70175 1.30092 1.47198 1.12601 0.84910 0.77908 0.77682 0.78245 1.18262 1.21912 1.22059 1.21872 0.92292 0.97970 0.84994 1.22107 0.96754 0.93058 0.85004 0.91702 1.45762 1.74026 1.10538 1.05306 1.21545 0.74554 0.89154 0.85690 1.90697 1.51592 1.17814 1.86937 1.21637 1.05870 0.98262 0.90619 1.21530 1.02458 0.97168 0.92736 1.23037 0.86237 0.94120 0.94886 0.87764 1.23047 0.98708 1.01196 0.95574 1.23143 0.97233 0.94265 1.02881 1.23293 0.90961 1.01434 0.85066 0.84678 1.20852 0.90680 0.74954 0.83817 1.43541 1.13025 1.75087 1.07684 1.90802 1.68212 1.51463 1.36517 1.89087 1.37459 1.78777 1.24838 0.90893 0.90270 0.93569 0.94905 0.94873 0.94770 0.99865 0.92344 0.74925 0.88853 0.84916 0.89348 0.94407 0.86543 0.90745 0.85021 0.92256 0.74586 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.17 71.98 0.66 -2.51 16 2 C -0.09 -3.11 3.16 -9.61 -0.03 -3.14 16 3 H 0.10 2.80 8.00 -2.39 -0.02 2.79 16 4 C 0.13 5.58 6.86 86.68 0.59 6.18 16 5 N -0.63 -35.04 3.40 -691.31 -2.35 -37.40 16 6 C -0.24 -14.31 10.28 84.03 0.86 -13.44 16 7 H 0.09 4.98 7.83 -2.91 -0.02 4.95 16 8 C -0.08 -4.67 5.49 84.86 0.47 -4.20 16 9 N -0.95 -63.23 10.09 21.65 0.22 -63.01 16 10 Si 0.98 49.22 29.55 68.60 2.03 51.25 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 14 C 0.16 8.63 5.58 86.85 0.48 9.12 16 15 C 0.14 5.73 2.76 46.38 0.13 5.86 16 16 H 0.06 3.02 7.64 -2.38 -0.02 3.01 16 17 N -0.70 -23.81 5.23 -435.97 -2.28 -26.09 16 18 C 0.50 18.16 7.83 87.66 0.69 18.85 16 19 O -0.59 -27.80 15.73 -3.04 -0.05 -27.84 16 20 C -0.12 -3.14 5.61 29.85 0.17 -2.97 16 21 C -0.10 -2.52 3.99 30.60 0.12 -2.40 16 22 C 0.07 1.28 3.41 30.97 0.11 1.38 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 C -0.15 -1.67 6.64 31.59 0.21 -1.46 16 25 C -0.14 -1.41 6.57 31.90 0.21 -1.20 16 26 C 0.05 0.80 3.76 30.53 0.11 0.91 16 27 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 28 C 0.51 10.49 7.48 87.66 0.66 11.15 16 29 N -0.83 -7.38 8.86 -173.53 -1.54 -8.92 16 30 O -0.59 -20.61 17.41 15.09 0.26 -20.35 16 31 O -0.38 -9.22 10.13 -130.87 -1.33 -10.55 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.26 8.07 -2.39 -0.02 1.24 16 35 H 0.03 1.36 7.78 -2.38 -0.02 1.34 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.06 3.90 5.86 -2.39 -0.01 3.88 16 40 H 0.41 10.51 8.51 -92.71 -0.79 9.72 16 41 H 0.09 2.54 7.89 -2.39 -0.02 2.52 16 42 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.09 2.07 8.10 -2.39 -0.02 2.05 16 44 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.07 1.06 7.70 -2.39 -0.02 1.04 16 47 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 49 H 0.42 0.01 8.83 -92.71 -0.82 -0.81 16 50 H 0.41 3.43 8.93 -92.71 -0.83 2.60 16 Total: -1.00 -99.01 403.19 -1.07 -100.08 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -1.47 Total: 20.71 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.44 Total: 22.11 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -5.95 Total: -135.41 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -1.11 Total: -58.74 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -99.01 -1.07 -100.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208044202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.331 kcal (2) G-P(sol) polarization free energy of solvation -99.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds