Wall clock time and date at job start Tue Mar 31 2020 23:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.32966 * 2 1 4 4 C 1.54483 * 110.46652 * 237.69001 * 2 1 3 5 5 C 1.54508 * 104.06135 * 217.14053 * 4 2 1 6 6 C 1.54480 * 104.06265 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46499 * 265.09489 * 6 5 4 8 8 C 1.50703 * 110.37047 * 142.81297 * 6 5 4 9 9 O 1.21283 * 119.99488 * 248.16107 * 8 6 5 10 10 N 1.34777 * 120.00290 * 68.16547 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 H 1.09000 * 110.64721 * 36.41599 * 11 10 8 13 13 C 1.54942 * 110.72217 * 273.26548 * 11 10 8 14 14 N 1.48535 * 103.22425 * 204.22837 * 13 11 10 15 15 C 1.46900 * 110.99387 * 159.72426 * 14 13 11 16 16 C 1.50692 * 109.47500 * 69.87500 * 15 14 13 17 17 O 1.21291 * 120.00286 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00444 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00686 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99906 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00700 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00304 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47253 * 60.00195 * 23 21 19 25 25 H 1.48501 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47155 * 299.99789 * 23 21 19 27 27 C 1.47898 * 105.82104 * 39.20860 * 14 13 11 28 28 C 1.53990 * 107.05873 * 334.66985 * 27 14 13 29 29 H 1.09001 * 110.31220 * 120.14393 * 28 27 14 30 30 C 1.53007 * 110.30521 * 242.30990 * 28 27 14 31 31 O 1.44416 * 104.80584 * 23.97709 * 6 5 4 32 32 H 1.08995 * 109.47159 * 299.19928 * 1 2 3 33 33 H 1.08993 * 109.46992 * 59.20220 * 1 2 3 34 34 H 1.09006 * 109.46570 * 179.20234 * 1 2 3 35 35 H 1.08998 * 110.51005 * 335.78752 * 4 2 1 36 36 H 1.08999 * 110.51067 * 98.49259 * 4 2 1 37 37 H 1.09002 * 110.50986 * 241.35374 * 5 4 2 38 38 H 1.08999 * 110.51069 * 118.64301 * 5 4 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 40 40 H 1.08995 * 110.66751 * 322.66971 * 13 11 10 41 41 H 1.09002 * 110.66398 * 85.63037 * 13 11 10 42 42 H 1.09003 * 109.47053 * 189.87793 * 15 14 13 43 43 H 1.09000 * 109.47350 * 309.87159 * 15 14 13 44 44 H 0.97006 * 119.99600 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99796 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.91806 * 94.01955 * 27 14 13 47 47 H 1.08999 * 109.91570 * 215.31329 * 27 14 13 48 48 H 1.09000 * 109.46901 * 175.71556 * 30 28 27 49 49 H 1.09006 * 109.46928 * 295.71016 * 30 28 27 50 50 H 1.08999 * 109.47261 * 55.71408 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0702 -0.7736 -1.2232 5 6 3.3208 -1.5031 -0.6837 6 6 3.3879 -1.0845 0.8018 7 1 4.0518 -0.2291 0.9271 8 6 3.8546 -2.2384 1.6514 9 8 3.0909 -2.7628 2.4341 10 7 5.1206 -2.6874 1.5415 11 6 5.5724 -3.8130 2.3631 12 1 4.7724 -4.5426 2.4889 13 6 6.0835 -3.3170 3.7392 14 7 7.0127 -4.3947 4.1651 15 6 7.9481 -3.9092 5.1884 16 6 7.2023 -3.6629 6.4745 17 8 6.0088 -3.8709 6.5329 18 7 7.8614 -3.2115 7.5600 19 6 7.1829 -2.9869 8.7299 20 1 6.1201 -3.1722 8.7818 21 6 7.8625 -2.5221 9.8491 22 7 9.1557 -2.2971 9.7861 23 14 6.9380 -2.2168 11.4433 24 1 6.3131 -3.4829 11.9034 25 1 7.8837 -1.7265 12.4779 26 1 5.8821 -1.1977 11.2158 27 6 7.7336 -4.8119 2.9430 28 6 6.8271 -4.4721 1.7455 29 1 7.3303 -3.7745 1.0760 30 6 6.4411 -5.7473 0.9931 31 8 2.0324 -0.7233 1.1450 32 1 -0.3633 0.5013 0.8970 33 1 -0.3633 0.5261 -0.8827 34 1 -0.3633 -1.0277 -0.0143 35 1 1.3314 -1.4927 -1.5770 36 1 2.3450 -0.0833 -2.0208 37 1 4.2139 -1.1734 -1.2146 38 1 3.2003 -2.5829 -0.7707 39 1 5.7313 -2.2681 0.9153 40 1 6.6140 -2.3707 3.6342 41 1 5.2573 -3.2174 4.4432 42 1 8.7237 -4.6565 5.3556 43 1 8.4061 -2.9796 4.8503 44 1 8.8160 -3.0455 7.5135 45 1 9.6301 -1.9722 10.5673 46 1 8.6745 -4.2673 2.8628 47 1 7.9239 -5.8848 2.9722 48 1 5.7399 -5.5006 0.1959 49 1 7.3348 -6.2003 0.5637 50 1 5.9739 -6.4493 1.6837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208747019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:18 Heat of formation + Delta-G solvation = -111.946972 kcal Electronic energy + Delta-G solvation = -30022.553988 eV Core-core repulsion = 25856.622912 eV Total energy + Delta-G solvation = -4165.931076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.64330 -39.59058 -38.40877 -37.52425 -34.56188 -33.81339 -32.78021 -32.60320 -31.90242 -31.16051 -29.05444 -27.53130 -26.64009 -25.21703 -23.94285 -22.95644 -21.50112 -21.32188 -20.68313 -20.12503 -19.13521 -17.82616 -17.47602 -16.96394 -16.69738 -16.12288 -15.78610 -15.25065 -14.87316 -14.75944 -14.47654 -14.27418 -14.14500 -14.00422 -13.76332 -13.64330 -13.53405 -13.15433 -12.83910 -12.72179 -12.65090 -12.37471 -12.17679 -11.97605 -11.85965 -11.68994 -11.45781 -11.35586 -11.24364 -11.21574 -11.14369 -11.01825 -10.91657 -10.61459 -10.38720 -10.24635 -10.15256 -9.68736 -9.42463 -9.10293 -8.42897 -7.95619 -7.87700 -6.35948 -3.76230 2.49511 2.70753 3.25274 3.29833 3.35278 3.65852 3.97113 4.06604 4.11465 4.24826 4.33787 4.43357 4.47957 4.60554 4.65221 4.73800 4.74281 4.90979 5.01207 5.07940 5.14461 5.26972 5.28759 5.30900 5.34570 5.34906 5.42012 5.46810 5.48943 5.54733 5.68713 5.70801 5.79756 5.83007 5.83615 5.89021 5.91825 6.06358 6.11870 6.32606 6.35467 6.49481 6.55291 7.16612 7.24222 7.36871 7.61174 8.12436 8.15438 8.68559 9.24713 9.60726 10.13508 10.81985 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.002513 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.362022 B =11139.499154 C =13056.144662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.058 3.942 7 H 0.094 0.906 8 C 0.516 3.484 9 O -0.505 6.505 10 N -0.721 5.721 11 C 0.146 3.854 12 H 0.105 0.895 13 C 0.034 3.966 14 N -0.489 5.489 15 C 0.038 3.962 16 C 0.444 3.556 17 O -0.573 6.573 18 N -0.567 5.567 19 C -0.296 4.296 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.905 5.905 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.038 3.962 28 C -0.106 4.106 29 H 0.078 0.922 30 C -0.141 4.141 31 O -0.339 6.339 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.397 0.603 40 H 0.039 0.961 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 2.896 -27.439 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.182 4.182 6 C -0.003 4.003 7 H 0.111 0.889 8 C 0.300 3.700 9 O -0.378 6.378 10 N -0.375 5.375 11 C 0.041 3.959 12 H 0.123 0.877 13 C -0.095 4.095 14 N -0.213 5.213 15 C -0.093 4.093 16 C 0.229 3.771 17 O -0.456 6.456 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.090 4.090 28 C -0.126 4.126 29 H 0.096 0.904 30 C -0.198 4.198 31 O -0.257 6.257 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.231 0.769 40 H 0.058 0.942 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.246 1.947 -26.207 27.011 hybrid contribution 1.345 1.342 0.048 1.900 sum -4.901 3.289 -26.159 26.817 Atomic orbital electron populations 1.21794 0.92797 1.03215 1.02587 1.23087 0.95852 0.95435 0.84864 0.91058 1.23015 0.97419 0.99859 0.98405 1.22905 0.99379 1.02255 0.93647 1.22825 0.87362 0.96350 0.93786 0.88859 1.20178 0.82083 0.84348 0.83376 1.90797 1.53802 1.57140 1.36075 1.45883 1.12336 1.35813 1.43423 1.22039 0.96527 0.87711 0.89603 0.87725 1.23639 0.97915 0.92104 0.95869 1.64434 1.15631 1.34540 1.06714 1.22069 0.94896 0.99359 0.93017 1.19717 0.88358 0.84149 0.84893 1.90536 1.14926 1.55861 1.84258 1.41843 1.10881 1.58051 1.09610 1.19655 0.95020 1.40792 0.87117 0.87992 1.25243 0.95704 0.97394 0.99670 1.69608 1.07430 1.46183 1.31411 0.85925 0.78768 0.78966 0.80621 1.19883 1.21032 1.19930 1.23002 0.95422 1.01799 0.88813 1.22230 0.95407 0.97968 0.96950 0.90416 1.21824 1.01298 0.96669 1.00008 1.89337 1.24660 1.74229 1.37521 0.91541 0.91075 0.91586 0.90173 0.90157 0.89608 0.90055 0.76889 0.94238 0.87604 0.89192 0.93343 0.77582 0.91927 0.93677 0.89841 0.92729 0.92365 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.53 37.16 0.35 -0.74 16 2 C 0.07 0.55 3.92 -25.95 -0.10 0.45 16 3 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.15 -0.93 6.63 -25.16 -0.17 -1.10 16 5 C -0.14 -0.97 6.62 -25.16 -0.17 -1.14 16 6 C 0.06 0.60 3.71 -27.10 -0.10 0.50 16 7 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.52 7.01 7.07 -10.98 -0.08 6.93 16 9 O -0.51 -9.72 16.28 -13.64 -0.22 -9.94 16 10 N -0.72 -7.75 5.20 -52.00 -0.27 -8.02 16 11 C 0.15 1.93 2.89 -66.07 -0.19 1.74 16 12 H 0.10 1.64 7.42 -51.93 -0.39 1.26 16 13 C 0.03 0.58 5.54 -1.89 -0.01 0.57 16 14 N -0.49 -8.38 4.96 -231.90 -1.15 -9.53 16 15 C 0.04 0.70 5.18 -4.98 -0.03 0.68 16 16 C 0.44 10.90 7.58 -10.99 -0.08 10.82 16 17 O -0.57 -16.26 14.42 5.55 0.08 -16.18 16 18 N -0.57 -14.80 5.29 -10.97 -0.06 -14.86 16 19 C -0.30 -8.52 9.68 -14.94 -0.14 -8.66 16 20 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 23 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.04 0.46 6.34 -2.76 -0.02 0.45 16 28 C -0.11 -1.06 3.32 -89.26 -0.30 -1.36 16 29 H 0.08 0.60 7.72 -51.93 -0.40 0.20 16 30 C -0.14 -1.22 8.89 37.16 0.33 -0.89 16 31 O -0.34 -4.41 10.61 -54.42 -0.58 -4.99 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 39 H 0.40 2.77 8.33 -40.82 -0.34 2.43 16 40 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 41 H 0.11 2.35 6.92 -51.93 -0.36 1.99 16 42 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 43 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 44 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 47 H 0.08 0.96 7.68 -51.93 -0.40 0.57 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -36.74 403.29 -9.62 -46.35 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.40 Total: 10.06 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.79 Total: 8.72 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.75 Total: -56.80 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.72 Total: -31.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.74 -9.62 -46.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208747019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.593 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds