Wall clock time and date at job start Tue Mar 31 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.32966 * 2 1 4 4 C 1.54483 * 110.46652 * 237.69001 * 2 1 3 5 5 C 1.54508 * 104.06135 * 217.14053 * 4 2 1 6 6 C 1.54480 * 104.06265 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46499 * 265.09489 * 6 5 4 8 8 C 1.50703 * 110.37047 * 142.81297 * 6 5 4 9 9 O 1.21283 * 119.99488 * 248.16107 * 8 6 5 10 10 N 1.34777 * 120.00290 * 68.16547 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 H 1.09000 * 110.64721 * 36.41599 * 11 10 8 13 13 C 1.54942 * 110.72217 * 273.26548 * 11 10 8 14 14 N 1.48535 * 103.22425 * 204.22837 * 13 11 10 15 15 C 1.46900 * 110.99387 * 159.72426 * 14 13 11 16 16 C 1.50692 * 109.47500 * 69.87500 * 15 14 13 17 17 O 1.21291 * 120.00286 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00444 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00686 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99906 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00700 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00304 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47253 * 60.00195 * 23 21 19 25 25 H 1.48501 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47155 * 299.99789 * 23 21 19 27 27 C 1.47898 * 105.82104 * 39.20860 * 14 13 11 28 28 C 1.53990 * 107.05873 * 334.66985 * 27 14 13 29 29 H 1.09001 * 110.31220 * 120.14393 * 28 27 14 30 30 C 1.53007 * 110.30521 * 242.30990 * 28 27 14 31 31 O 1.44416 * 104.80584 * 23.97709 * 6 5 4 32 32 H 1.08995 * 109.47159 * 299.19928 * 1 2 3 33 33 H 1.08993 * 109.46992 * 59.20220 * 1 2 3 34 34 H 1.09006 * 109.46570 * 179.20234 * 1 2 3 35 35 H 1.08998 * 110.51005 * 335.78752 * 4 2 1 36 36 H 1.08999 * 110.51067 * 98.49259 * 4 2 1 37 37 H 1.09002 * 110.50986 * 241.35374 * 5 4 2 38 38 H 1.08999 * 110.51069 * 118.64301 * 5 4 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 40 40 H 1.08995 * 110.66751 * 322.66971 * 13 11 10 41 41 H 1.09002 * 110.66398 * 85.63037 * 13 11 10 42 42 H 1.09003 * 109.47053 * 189.87793 * 15 14 13 43 43 H 1.09000 * 109.47350 * 309.87159 * 15 14 13 44 44 H 0.97006 * 119.99600 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99796 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.91806 * 94.01955 * 27 14 13 47 47 H 1.08999 * 109.91570 * 215.31329 * 27 14 13 48 48 H 1.09000 * 109.46901 * 175.71556 * 30 28 27 49 49 H 1.09006 * 109.46928 * 295.71016 * 30 28 27 50 50 H 1.08999 * 109.47261 * 55.71408 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0702 -0.7736 -1.2232 5 6 3.3208 -1.5031 -0.6837 6 6 3.3879 -1.0845 0.8018 7 1 4.0518 -0.2291 0.9271 8 6 3.8546 -2.2384 1.6514 9 8 3.0909 -2.7628 2.4341 10 7 5.1206 -2.6874 1.5415 11 6 5.5724 -3.8130 2.3631 12 1 4.7724 -4.5426 2.4889 13 6 6.0835 -3.3170 3.7392 14 7 7.0127 -4.3947 4.1651 15 6 7.9481 -3.9092 5.1884 16 6 7.2023 -3.6629 6.4745 17 8 6.0088 -3.8709 6.5329 18 7 7.8614 -3.2115 7.5600 19 6 7.1829 -2.9869 8.7299 20 1 6.1201 -3.1722 8.7818 21 6 7.8625 -2.5221 9.8491 22 7 9.1557 -2.2971 9.7861 23 14 6.9380 -2.2168 11.4433 24 1 6.3131 -3.4829 11.9034 25 1 7.8837 -1.7265 12.4779 26 1 5.8821 -1.1977 11.2158 27 6 7.7336 -4.8119 2.9430 28 6 6.8271 -4.4721 1.7455 29 1 7.3303 -3.7745 1.0760 30 6 6.4411 -5.7473 0.9931 31 8 2.0324 -0.7233 1.1450 32 1 -0.3633 0.5013 0.8970 33 1 -0.3633 0.5261 -0.8827 34 1 -0.3633 -1.0277 -0.0143 35 1 1.3314 -1.4927 -1.5770 36 1 2.3450 -0.0833 -2.0208 37 1 4.2139 -1.1734 -1.2146 38 1 3.2003 -2.5829 -0.7707 39 1 5.7313 -2.2681 0.9153 40 1 6.6140 -2.3707 3.6342 41 1 5.2573 -3.2174 4.4432 42 1 8.7237 -4.6565 5.3556 43 1 8.4061 -2.9796 4.8503 44 1 8.8160 -3.0455 7.5135 45 1 9.6301 -1.9722 10.5673 46 1 8.6745 -4.2673 2.8628 47 1 7.9239 -5.8848 2.9722 48 1 5.7399 -5.5006 0.1959 49 1 7.3348 -6.2003 0.5637 50 1 5.9739 -6.4493 1.6837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208747019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:17 Heat of formation + Delta-G solvation = -141.625440 kcal Electronic energy + Delta-G solvation = -30023.840943 eV Core-core repulsion = 25856.622912 eV Total energy + Delta-G solvation = -4167.218031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.61271 -40.72345 -39.82771 -38.97163 -36.09847 -35.57659 -33.83871 -33.29506 -33.25619 -32.59507 -30.23952 -28.81070 -27.49745 -26.79092 -25.31877 -23.72601 -22.57842 -22.08970 -21.70625 -21.09036 -20.99006 -19.91146 -18.39849 -17.90668 -17.79092 -17.49472 -16.80676 -16.53186 -16.41355 -16.21937 -15.76741 -15.72978 -15.45648 -14.89249 -14.78302 -14.72448 -14.59590 -14.45014 -14.08790 -13.80628 -13.54111 -13.50969 -13.25274 -13.16888 -12.98920 -12.86091 -12.75581 -12.51605 -12.46225 -12.44580 -12.22292 -12.14839 -11.90105 -11.85438 -11.68916 -11.66299 -11.50544 -11.05863 -10.67608 -10.34164 -10.19628 -10.02653 -9.32412 -8.48827 -5.97314 1.36870 1.38115 1.46214 1.49351 1.78745 2.03929 2.26915 2.80298 2.99925 3.17257 3.32499 3.50046 3.52271 3.59640 3.65204 3.90220 3.93376 3.96212 4.13525 4.14712 4.26584 4.27794 4.32754 4.42380 4.44638 4.50340 4.55775 4.56512 4.68552 4.74955 4.82502 4.90162 4.93671 4.95099 5.02102 5.03860 5.07637 5.12510 5.17229 5.23917 5.33258 5.38098 5.45961 5.80075 5.83657 5.95259 6.09921 6.48305 6.59443 7.11482 7.19090 7.54335 8.12276 8.68465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.002513 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.362022 B =11139.499154 C =13056.144662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 H 0.088 0.912 4 C -0.143 4.143 5 C -0.135 4.135 6 C 0.057 3.943 7 H 0.120 0.880 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.698 5.698 11 C 0.154 3.846 12 H 0.070 0.930 13 C 0.037 3.963 14 N -0.518 5.518 15 C 0.052 3.948 16 C 0.436 3.564 17 O -0.620 6.620 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.275 1.275 27 C 0.037 3.963 28 C -0.090 4.090 29 H 0.118 0.882 30 C -0.137 4.137 31 O -0.389 6.389 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.421 0.579 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 3.864 -30.660 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.003 4.003 3 H 0.106 0.894 4 C -0.180 4.180 5 C -0.173 4.173 6 C -0.004 4.004 7 H 0.138 0.862 8 C 0.295 3.705 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.048 3.952 12 H 0.088 0.912 13 C -0.092 4.092 14 N -0.243 5.243 15 C -0.079 4.079 16 C 0.223 3.777 17 O -0.506 6.506 18 N -0.212 5.212 19 C -0.464 4.464 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.189 1.189 26 H -0.200 1.200 27 C -0.091 4.091 28 C -0.109 4.109 29 H 0.136 0.864 30 C -0.195 4.195 31 O -0.309 6.309 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.672 2.931 -29.492 29.864 hybrid contribution 0.539 1.035 1.060 1.576 sum -3.134 3.966 -28.432 28.878 Atomic orbital electron populations 1.21840 0.92821 1.02523 1.03273 1.23400 0.96086 0.96181 0.84628 0.89448 1.23027 0.96929 1.00063 0.98022 1.22955 1.01455 1.01776 0.91117 1.23045 0.86825 0.95474 0.95085 0.86231 1.21048 0.82127 0.84626 0.82654 1.90767 1.55864 1.59630 1.39246 1.45660 1.11974 1.34835 1.42776 1.21756 0.97084 0.87746 0.88647 0.91199 1.23393 0.96291 0.92992 0.96527 1.64287 1.16541 1.34448 1.08985 1.21941 0.94512 1.01449 0.90009 1.20930 0.88151 0.82118 0.86456 1.90519 1.17397 1.57313 1.85360 1.41898 1.11050 1.58616 1.09599 1.19567 0.94285 1.43369 0.89185 0.90950 1.25996 0.96621 0.96330 1.02147 1.69656 1.08124 1.45618 1.32534 0.85031 0.77856 0.78677 0.77017 1.19841 1.18942 1.20017 1.23165 0.96317 1.02600 0.86975 1.22231 0.92916 0.99085 0.96643 0.86419 1.21809 1.02513 0.95537 0.99616 1.89307 1.26228 1.75135 1.40215 0.92957 0.88181 0.93028 0.90507 0.86963 0.85569 0.91138 0.74012 0.93450 0.94217 0.86568 0.90834 0.76889 0.91207 0.90990 0.88974 0.91791 0.89805 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.53 71.98 0.69 -1.51 16 2 C 0.05 0.85 3.92 31.10 0.12 0.97 16 3 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 4 C -0.14 -1.39 6.63 31.61 0.21 -1.19 16 5 C -0.14 -1.45 6.62 31.61 0.21 -1.24 16 6 C 0.06 1.11 3.71 30.35 0.11 1.22 16 7 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 8 C 0.51 14.28 7.07 87.66 0.62 14.90 16 9 O -0.58 -24.30 16.28 15.31 0.25 -24.05 16 10 N -0.70 -14.39 5.20 -436.83 -2.27 -16.67 16 11 C 0.15 4.09 2.89 46.20 0.13 4.23 16 12 H 0.07 2.38 7.42 -2.39 -0.02 2.36 16 13 C 0.04 1.34 5.54 86.65 0.48 1.82 16 14 N -0.52 -17.69 4.96 -887.58 -4.40 -22.09 16 15 C 0.05 1.89 5.18 85.55 0.44 2.33 16 16 C 0.44 22.26 7.58 87.65 0.66 22.92 16 17 O -0.62 -37.67 14.42 -3.06 -0.04 -37.71 16 18 N -0.57 -30.94 5.29 -306.99 -1.62 -32.56 16 19 C -0.33 -20.01 9.68 84.04 0.81 -19.19 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 23 Si 0.99 44.91 29.55 68.60 2.03 46.94 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 C 0.04 0.78 6.34 86.45 0.55 1.33 16 28 C -0.09 -1.52 3.32 -9.91 -0.03 -1.55 16 29 H 0.12 1.14 7.72 -2.39 -0.02 1.13 16 30 C -0.14 -2.00 8.89 71.98 0.64 -1.36 16 31 O -0.39 -10.45 10.61 -130.63 -1.39 -11.83 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.89 8.13 -2.38 -0.02 0.87 16 35 H 0.08 0.81 7.86 -2.39 -0.02 0.79 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 0.93 7.86 -2.39 -0.02 0.91 16 39 H 0.42 4.47 8.33 -92.71 -0.77 3.70 16 40 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 41 H 0.04 1.94 6.92 -2.39 -0.02 1.92 16 42 H 0.12 3.58 8.11 -2.39 -0.02 3.56 16 43 H 0.07 2.29 7.90 -2.39 -0.02 2.28 16 44 H 0.40 19.99 7.90 -92.70 -0.73 19.26 16 45 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.07 1.21 7.77 -2.39 -0.02 1.20 16 47 H 0.09 1.85 7.68 -2.39 -0.02 1.83 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -89.92 403.29 -1.60 -91.52 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.55 Total: 33.38 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.12 Total: 23.54 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -8.01 Total: -121.78 kcal Atomic # 8 Polarization: -72.42 SS G_CDS: -1.18 Total: -73.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -89.92 -1.60 -91.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208747019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.108 kcal (2) G-P(sol) polarization free energy of solvation -89.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds