Wall clock time and date at job start Tue Mar 31 2020 23:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.64688 * 2 1 4 4 C 1.54322 * 110.87144 * 236.74757 * 2 1 3 5 5 N 1.47027 * 107.27287 * 219.37692 * 4 2 1 6 6 C 1.36934 * 125.64839 * 178.89341 * 5 4 2 7 7 H 1.07995 * 120.00256 * 0.02562 * 6 5 4 8 8 C 1.38806 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00235 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47346 * 60.00250 * 10 8 6 12 12 H 1.48508 * 109.47093 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47110 * 300.00044 * 10 8 6 14 14 C 1.47425 * 108.70264 * 358.93859 * 5 4 2 15 15 C 1.54914 * 104.83122 * 24.12963 * 14 5 4 16 16 H 1.09006 * 111.03620 * 81.07717 * 15 14 5 17 17 N 1.46499 * 111.00663 * 204.91272 * 15 14 5 18 18 C 1.34777 * 120.00199 * 267.20125 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 N 1.46491 * 109.46957 * 179.72354 * 20 18 17 22 22 C 1.34780 * 120.00091 * 179.97438 * 21 20 18 23 23 O 1.21277 * 119.99974 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.00003 * 180.02562 * 22 21 20 25 25 C 1.53181 * 109.54172 * 299.54920 * 24 22 21 26 26 C 1.53095 * 109.16192 * 183.15270 * 25 24 22 27 27 O 1.42904 * 109.41126 * 57.61464 * 26 25 24 28 28 C 1.42901 * 114.10035 * 298.83798 * 27 26 25 29 29 C 1.53092 * 109.41116 * 61.16015 * 28 27 26 30 30 H 1.09003 * 109.47009 * 296.86285 * 1 2 3 31 31 H 1.08997 * 109.47356 * 56.85740 * 1 2 3 32 32 H 1.09000 * 109.47679 * 176.86113 * 1 2 3 33 33 H 1.09000 * 109.88236 * 338.79286 * 4 2 1 34 34 H 1.09002 * 109.88231 * 99.95587 * 4 2 1 35 35 H 0.96999 * 120.00052 * 180.02562 * 9 8 6 36 36 H 1.08994 * 110.36742 * 265.29153 * 14 5 4 37 37 H 1.08996 * 110.36482 * 142.96377 * 14 5 4 38 38 H 0.97000 * 119.99484 * 87.19222 * 17 15 14 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 0.97003 * 120.00560 * 359.97438 * 21 20 18 42 42 H 1.08992 * 109.54584 * 59.82529 * 24 22 21 43 43 H 1.08993 * 109.52788 * 303.06307 * 25 24 22 44 44 H 1.09000 * 109.51550 * 63.25467 * 25 24 22 45 45 H 1.08999 * 109.48273 * 297.63349 * 26 25 24 46 46 H 1.09002 * 109.47937 * 177.59604 * 26 25 24 47 47 H 1.08999 * 109.48367 * 301.17913 * 28 27 26 48 48 H 1.09001 * 109.49137 * 181.14590 * 28 27 26 49 49 H 1.09004 * 109.52003 * 182.48825 * 29 28 27 50 50 H 1.08999 * 109.57944 * 62.33054 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0798 -0.7907 -1.2059 5 7 3.2493 -1.5472 -0.7352 6 6 4.0113 -2.3933 -1.4959 7 1 3.7698 -2.5489 -2.5369 8 6 5.0949 -3.0502 -0.9291 9 7 5.3896 -2.8602 0.3396 10 14 6.1348 -4.2039 -1.9669 11 1 6.7256 -3.4513 -3.1025 12 1 7.2220 -4.7759 -1.1325 13 1 5.2832 -5.3021 -2.4903 14 6 3.4651 -1.2448 0.6914 15 6 2.0789 -0.7934 1.2152 16 1 1.4464 -1.6525 1.4389 17 7 2.2174 0.0727 2.3886 18 6 2.1826 -0.4590 3.6266 19 8 2.0361 -1.6545 3.7691 20 6 2.3189 0.4328 4.8337 21 7 2.2431 -0.3785 6.0511 22 6 2.3421 0.2094 7.2600 23 8 2.4943 1.4099 7.3398 24 6 2.2647 -0.6253 8.5123 25 6 0.9110 -1.3400 8.5689 26 6 0.8102 -2.1222 9.8811 27 8 0.9786 -1.2267 10.9819 28 6 2.2450 -0.5651 11.0075 29 6 2.4035 0.2795 9.7405 30 1 -0.3633 0.4644 0.9168 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3189 -1.4774 -1.5769 34 1 2.3774 -0.1017 -1.9963 35 1 6.1470 -3.3189 0.7355 36 1 4.1929 -0.4411 0.8030 37 1 3.7991 -2.1365 1.2219 38 1 2.3343 1.0289 2.2745 39 1 3.2794 0.9470 4.7990 40 1 1.5135 1.1671 4.8357 41 1 2.1217 -1.3388 5.9874 42 1 3.0678 -1.3621 8.5096 43 1 0.1083 -0.6043 8.5208 44 1 0.8270 -2.0279 7.7275 45 1 1.5885 -2.8848 9.9105 46 1 -0.1682 -2.5983 9.9462 47 1 3.0421 -1.3073 11.0516 48 1 2.3005 0.0805 11.8840 49 1 3.3868 0.7500 9.7370 50 1 1.6316 1.0487 9.7154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209565535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:27 Heat of formation + Delta-G solvation = -102.789141 kcal Electronic energy + Delta-G solvation = -29850.689235 eV Core-core repulsion = 25685.155272 eV Total energy + Delta-G solvation = -4165.533963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64857 -39.69555 -38.71086 -37.61928 -34.61496 -34.02707 -34.00293 -32.74045 -31.44578 -30.41295 -29.05414 -27.33346 -25.80014 -25.48559 -23.87789 -23.54834 -21.51420 -20.77565 -20.22572 -20.18521 -19.59990 -17.99520 -17.01899 -16.66635 -16.43571 -16.22242 -16.18391 -15.73476 -15.43821 -15.14982 -14.88460 -14.81593 -14.21009 -13.90879 -13.74557 -13.62879 -13.22339 -13.03987 -12.91400 -12.74669 -12.66498 -12.49768 -12.22521 -11.83975 -11.76916 -11.68833 -11.29403 -11.13520 -11.10454 -10.82769 -10.81471 -10.71218 -10.45401 -10.24182 -10.04223 -9.88064 -9.83069 -9.77392 -9.67110 -9.31235 -8.68859 -8.58341 -6.88339 -5.67378 -3.10926 2.41308 2.72450 2.76505 3.39019 3.42821 3.44730 3.47497 3.55775 4.24281 4.35587 4.41273 4.46291 4.61523 4.72878 4.84326 4.92900 5.06761 5.09811 5.15617 5.22102 5.25359 5.26949 5.29617 5.33340 5.38419 5.45450 5.49301 5.65106 5.69321 5.72929 5.90006 5.91794 5.97528 6.08765 6.12586 6.18428 6.32118 6.40809 6.61583 6.67908 6.83049 6.87641 7.31743 7.36616 7.57427 7.69426 7.84145 8.01724 8.31108 8.36685 9.17644 9.78963 10.41780 11.35653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.002238 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.907032 B =12506.140972 C =13586.030364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.920 5.920 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.149 3.851 15 C 0.118 3.882 16 H 0.094 0.906 17 N -0.706 5.706 18 C 0.507 3.493 19 O -0.535 6.535 20 C 0.099 3.901 21 N -0.714 5.714 22 C 0.522 3.478 23 O -0.542 6.542 24 C -0.109 4.109 25 C -0.149 4.149 26 C 0.062 3.938 27 O -0.383 6.383 28 C 0.060 3.940 29 C -0.135 4.135 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.013 0.987 37 H 0.112 0.888 38 H 0.398 0.602 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.413 0.587 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.052 0.948 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 6.661 16.725 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.567 5.567 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.023 3.977 15 C 0.013 3.987 16 H 0.112 0.888 17 N -0.356 5.356 18 C 0.292 3.708 19 O -0.412 6.412 20 C -0.028 4.028 21 N -0.369 5.369 22 C 0.308 3.692 23 O -0.419 6.419 24 C -0.130 4.130 25 C -0.187 4.187 26 C -0.014 4.014 27 O -0.302 6.302 28 C -0.017 4.017 29 C -0.173 4.173 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.251 0.749 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.381 6.532 17.000 20.486 hybrid contribution 0.928 -0.454 -1.109 1.515 sum -8.454 6.077 15.891 18.998 Atomic orbital electron populations 1.21737 0.94911 1.01902 1.00927 1.22436 0.95258 0.99214 0.96219 0.90760 1.21344 0.90247 0.93219 0.93724 1.44378 1.30773 1.50621 1.07150 1.19020 1.06205 1.17309 0.92947 0.90349 1.24819 0.98755 1.00562 0.96423 1.69782 1.29962 1.46148 1.10858 0.86138 0.79749 0.80593 0.78907 1.21190 1.21559 1.21082 1.22227 0.89196 1.01117 0.85178 1.22773 1.01264 0.92358 0.82287 0.88791 1.45777 1.73090 1.11219 1.05523 1.20336 0.76923 0.88896 0.84677 1.90718 1.49288 1.15324 1.85850 1.21079 1.04562 0.93743 0.83443 1.45735 1.74156 1.12550 1.04479 1.20519 0.75783 0.88446 0.84486 1.90700 1.49060 1.14950 1.87206 1.21371 1.00002 0.98500 0.93125 1.22227 0.96319 1.00589 0.99593 1.22585 1.02497 0.91251 0.85111 1.87946 1.35796 1.59485 1.46983 1.22637 0.85716 0.95330 0.97973 1.22028 1.04281 0.98268 0.92754 0.93120 0.92815 0.92473 0.95422 0.95800 0.93619 0.96857 0.87085 0.76850 0.88357 0.88612 0.74884 0.88084 0.90296 0.89867 0.92716 0.88362 0.92971 0.88460 0.90028 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.17 37.16 0.34 -1.45 16 2 C -0.11 -1.78 3.19 -88.79 -0.28 -2.07 16 3 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.83 6.84 -3.06 -0.02 2.80 16 5 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 6 C -0.23 -6.28 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 10 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.15 3.56 5.58 -2.53 -0.01 3.55 16 15 C 0.12 2.16 2.87 -65.78 -0.19 1.97 16 16 H 0.09 1.91 7.45 -51.93 -0.39 1.52 16 17 N -0.71 -10.21 5.20 -51.72 -0.27 -10.47 16 18 C 0.51 7.52 7.90 -10.98 -0.09 7.44 16 19 O -0.53 -9.94 15.31 5.55 0.09 -9.86 16 20 C 0.10 1.16 6.15 -5.20 -0.03 1.13 16 21 N -0.71 -8.23 5.44 -61.48 -0.33 -8.56 16 22 C 0.52 6.08 7.16 -10.98 -0.08 6.00 16 23 O -0.54 -7.97 15.97 5.56 0.09 -7.88 16 24 C -0.11 -0.95 2.61 -91.58 -0.24 -1.19 16 25 C -0.15 -1.14 5.30 -26.59 -0.14 -1.28 16 26 C 0.06 0.45 6.84 37.21 0.25 0.70 16 27 O -0.38 -3.50 10.77 -35.23 -0.38 -3.88 16 28 C 0.06 0.44 6.84 37.21 0.25 0.70 16 29 C -0.14 -1.16 4.73 -26.59 -0.13 -1.28 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 3.14 5.87 -51.93 -0.31 2.83 16 38 H 0.40 4.48 8.57 -40.82 -0.35 4.13 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.41 4.68 6.95 -40.82 -0.28 4.40 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.81 8.02 -51.93 -0.42 0.39 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -34.30 398.37 -8.88 -43.18 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.42 Total: 6.45 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.61 Total: 10.21 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.62 Total: -61.27 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.21 Total: -21.61 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.30 -8.88 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209565535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.612 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds