Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.54773 * 2 1 4 4 C 1.54993 * 110.61923 * 237.12641 * 2 1 3 5 5 C 1.54816 * 102.08970 * 204.31452 * 4 2 1 6 6 C 1.54096 * 104.18784 * 20.88177 * 5 4 2 7 7 H 1.09001 * 109.87863 * 242.45404 * 6 5 4 8 8 C 1.50702 * 109.88278 * 121.45472 * 6 5 4 9 9 O 1.21284 * 119.99845 * 244.99933 * 8 6 5 10 10 N 1.34776 * 120.00056 * 64.99282 * 8 6 5 11 11 C 1.46925 * 120.62760 * 0.02846 * 10 8 6 12 12 C 1.53194 * 108.77528 * 126.36911 * 11 10 8 13 13 C 1.53036 * 109.31374 * 54.62975 * 12 11 10 14 14 C 1.53036 * 109.54054 * 298.63862 * 13 12 11 15 15 H 1.09004 * 109.52631 * 301.39346 * 14 13 12 16 16 N 1.46901 * 109.50063 * 181.31470 * 14 13 12 17 17 C 1.46905 * 110.99870 * 85.16001 * 16 14 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00264 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99477 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46852 * 90.00344 * 25 23 21 27 27 H 1.48501 * 109.46586 * 209.99698 * 25 23 21 28 28 H 1.48495 * 109.47035 * 329.99964 * 25 23 21 29 29 C 1.46920 * 120.63008 * 180.02562 * 10 8 6 30 30 O 1.43746 * 107.29571 * 2.02332 * 6 5 4 31 31 H 1.09002 * 109.46962 * 182.87786 * 1 2 3 32 32 H 1.09000 * 109.47302 * 302.87632 * 1 2 3 33 33 H 1.08997 * 109.46938 * 62.87976 * 1 2 3 34 34 H 1.08997 * 110.91327 * 86.11653 * 4 2 1 35 35 H 1.09000 * 110.93686 * 322.52300 * 4 2 1 36 36 H 1.08998 * 110.48898 * 262.19726 * 5 4 2 37 37 H 1.09007 * 110.59577 * 139.61156 * 5 4 2 38 38 H 1.09008 * 109.58590 * 246.14945 * 11 10 8 39 39 H 1.08995 * 109.59072 * 6.43635 * 11 10 8 40 40 H 1.08996 * 109.50197 * 174.58408 * 12 11 10 41 41 H 1.08998 * 109.49429 * 294.64608 * 12 11 10 42 42 H 1.09000 * 109.46464 * 178.61469 * 13 12 11 43 43 H 1.09002 * 109.46076 * 58.65687 * 13 12 11 44 44 H 1.00901 * 111.00067 * 209.11177 * 16 14 13 45 45 H 1.09001 * 109.46798 * 300.00327 * 17 16 14 46 46 H 1.08998 * 109.46961 * 60.00043 * 17 16 14 47 47 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00444 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.58841 * 113.84789 * 29 10 8 50 50 H 1.08993 * 109.58828 * 353.42066 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2183 5 6 3.4812 -1.2119 -0.7269 6 6 3.3875 -1.1218 0.8086 7 1 4.0897 -0.3751 1.1795 8 6 3.6963 -2.4639 1.4206 9 8 2.8366 -3.0649 2.0294 10 7 4.9277 -2.9962 1.2913 11 6 5.9796 -2.2798 0.5572 12 6 7.2126 -2.1561 1.4578 13 6 7.6234 -3.5466 1.9475 14 6 6.4851 -4.1572 2.7681 15 1 6.2550 -3.5070 3.6122 16 7 6.8922 -5.4787 3.2640 17 6 7.6448 -5.3607 4.5201 18 6 8.0450 -6.7331 4.9967 19 8 7.7344 -7.7132 4.3531 20 7 8.7482 -6.8717 6.1380 21 6 9.1128 -8.1202 6.5714 22 1 8.8362 -8.9928 5.9983 23 6 9.8374 -8.2630 7.7485 24 7 10.1735 -7.2013 8.4460 25 14 10.3335 -9.9643 8.3392 26 1 11.6596 -10.3179 7.7722 27 1 10.4117 -9.9700 9.8221 28 1 9.3235 -10.9573 7.8929 29 6 5.2437 -4.3039 1.8819 30 8 2.0416 -0.7347 1.1326 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3634 0.5578 0.8631 33 1 -0.3633 0.4685 -0.9147 34 1 2.1483 -0.1451 -2.0960 35 1 1.4569 -1.6599 -1.4273 36 1 4.2403 -0.5266 -1.1038 37 1 3.7033 -2.2333 -1.0363 38 1 6.2396 -2.8355 -0.3439 39 1 5.6230 -1.2868 0.2839 40 1 8.0326 -1.7123 0.8932 41 1 6.9760 -1.5237 2.3135 42 1 8.5152 -3.4641 2.5687 43 1 7.8361 -4.1853 1.0902 44 1 6.0932 -6.0845 3.3768 45 1 8.5385 -4.7595 4.3530 46 1 7.0204 -4.8816 5.2741 47 1 8.9970 -6.0878 6.6526 48 1 10.6790 -7.3010 9.2679 49 1 5.4437 -5.0243 1.0888 50 1 4.4024 -4.6454 2.4848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209714669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = -115.492264 kcal Electronic energy + Delta-G solvation = -29760.867824 eV Core-core repulsion = 25594.783013 eV Total energy + Delta-G solvation = -4166.084811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01673 -39.40189 -38.31232 -37.49127 -35.21893 -33.86224 -32.80627 -32.55034 -32.11105 -31.22571 -30.06274 -27.43202 -26.35070 -25.31893 -23.94930 -22.94434 -22.49527 -21.68653 -20.56274 -19.55094 -19.11861 -17.87698 -17.67229 -16.94125 -16.79306 -16.19493 -15.69908 -15.34029 -15.20821 -14.83187 -14.66348 -14.49486 -14.37259 -14.08418 -13.99337 -13.79513 -13.59822 -13.32833 -13.03321 -12.90407 -12.75265 -12.51067 -12.24454 -12.21370 -11.94193 -11.85500 -11.53857 -11.45435 -11.40343 -11.32976 -11.08489 -11.07200 -10.86696 -10.76448 -10.43946 -10.38226 -10.20610 -9.68888 -9.49658 -8.90169 -8.45233 -8.09701 -7.94886 -6.40426 -3.81207 2.31337 2.47813 3.19115 3.27604 3.33731 3.41383 3.91837 3.92893 4.06648 4.09198 4.25203 4.31532 4.35255 4.57087 4.64852 4.65437 4.71920 4.80650 4.88598 4.91497 5.00256 5.05261 5.17819 5.19274 5.23028 5.25396 5.26870 5.38417 5.40149 5.44022 5.51716 5.61083 5.64389 5.71288 5.75563 5.78835 5.85789 5.96690 6.03961 6.13370 6.21519 6.32501 6.44488 7.08919 7.20723 7.56566 7.62325 7.93478 8.07582 8.62483 9.19144 9.55521 10.06952 10.77331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.001831 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.376313 B =15286.306453 C =15643.505858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.148 4.148 6 C 0.063 3.937 7 H 0.094 0.906 8 C 0.514 3.486 9 O -0.518 6.518 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.136 4.136 13 C -0.110 4.110 14 C 0.075 3.925 15 H 0.046 0.954 16 N -0.661 5.661 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.112 3.888 30 O -0.344 6.344 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.080 0.920 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 20.472 -20.233 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.091 0.909 4 C -0.188 4.188 5 C -0.186 4.186 6 C 0.002 3.998 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.393 6.393 10 N -0.343 5.343 11 C -0.019 4.019 12 C -0.175 4.175 13 C -0.148 4.148 14 C -0.036 4.036 15 H 0.064 0.936 16 N -0.294 5.294 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.011 4.011 30 O -0.262 6.262 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.172 0.828 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.618 19.403 -20.331 30.410 hybrid contribution 0.129 0.029 1.226 1.233 sum -11.488 19.432 -19.105 29.573 Atomic orbital electron populations 1.21769 0.92734 1.03411 1.02479 1.23224 0.95714 0.95190 0.84756 0.90907 1.23210 0.95713 1.01190 0.98639 1.23008 0.98798 1.03784 0.92979 1.22571 0.87312 0.94570 0.95352 0.88832 1.20459 0.81967 0.87106 0.80405 1.90735 1.45832 1.61936 1.40772 1.47989 1.10609 1.20781 1.54938 1.21911 0.88058 0.96994 0.94981 1.21956 0.97203 0.98400 0.99916 1.21548 0.98105 0.94638 1.00492 1.21848 0.93888 0.91320 0.96582 0.93600 1.60107 1.29033 1.10041 1.30224 1.21714 0.98795 0.97266 0.90280 1.19785 0.84314 0.89896 0.83351 1.90526 1.59124 1.39893 1.57132 1.41862 1.48058 1.09457 1.20660 1.19710 1.31562 0.85653 1.05952 0.87899 1.25266 0.97191 0.99225 0.96288 1.69609 1.39301 1.29002 1.16420 0.85850 0.79044 0.81781 0.77566 1.20397 1.20947 1.19423 1.21756 0.97708 0.83770 0.97848 1.89039 1.25718 1.73166 1.38297 0.91469 0.91666 0.90960 0.89687 0.90046 0.89382 0.89746 0.90727 0.89897 0.90215 0.91486 0.91247 0.90767 0.82839 0.89603 0.93805 0.77472 0.91885 0.90132 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.66 37.16 0.36 -0.58 16 2 C 0.07 0.49 3.97 -25.68 -0.10 0.39 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.15 -0.85 6.59 -24.72 -0.16 -1.01 16 5 C -0.15 -0.86 5.07 -25.20 -0.13 -0.99 16 6 C 0.06 0.57 2.96 -27.31 -0.08 0.49 16 7 H 0.09 0.66 7.50 -51.93 -0.39 0.27 16 8 C 0.51 6.35 6.89 -10.98 -0.08 6.28 16 9 O -0.52 -8.89 15.94 -14.02 -0.22 -9.12 16 10 N -0.61 -6.25 2.97 -172.75 -0.51 -6.77 16 11 C 0.10 0.69 5.60 -3.71 -0.02 0.67 16 12 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 13 C -0.11 -1.15 5.40 -26.69 -0.14 -1.29 16 14 C 0.07 0.94 2.64 -67.57 -0.18 0.76 16 15 H 0.05 0.62 7.80 -51.93 -0.41 0.21 16 16 N -0.66 -10.70 5.93 -107.84 -0.64 -11.34 16 17 C 0.05 0.93 5.97 -4.97 -0.03 0.90 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 19 O -0.58 -15.99 15.78 5.54 0.09 -15.90 16 20 N -0.56 -14.48 5.29 -10.96 -0.06 -14.53 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C 0.11 1.35 5.70 -3.69 -0.02 1.33 16 30 O -0.34 -3.92 10.45 -54.80 -0.57 -4.49 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 36 H 0.09 0.28 7.72 -51.93 -0.40 -0.12 16 37 H 0.08 0.54 7.50 -51.93 -0.39 0.15 16 38 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.08 0.37 4.83 -51.93 -0.25 0.12 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.79 7.44 -51.93 -0.39 0.40 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.35 5.99 8.06 -39.29 -0.32 5.68 16 45 H 0.09 1.41 7.43 -51.93 -0.39 1.02 16 46 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -35.28 396.00 -9.51 -44.79 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.19 Total: 11.02 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.07 Total: 8.16 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.49 Total: -56.68 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.71 Total: -29.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.28 -9.51 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209714669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.702 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds