Wall clock time and date at job start Tue Mar 31 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.54773 * 2 1 4 4 C 1.54993 * 110.61923 * 237.12641 * 2 1 3 5 5 C 1.54816 * 102.08970 * 204.31452 * 4 2 1 6 6 C 1.54096 * 104.18784 * 20.88177 * 5 4 2 7 7 H 1.09001 * 109.87863 * 242.45404 * 6 5 4 8 8 C 1.50702 * 109.88278 * 121.45472 * 6 5 4 9 9 O 1.21284 * 119.99845 * 244.99933 * 8 6 5 10 10 N 1.34776 * 120.00056 * 64.99282 * 8 6 5 11 11 C 1.46925 * 120.62760 * 0.02846 * 10 8 6 12 12 C 1.53194 * 108.77528 * 126.36911 * 11 10 8 13 13 C 1.53036 * 109.31374 * 54.62975 * 12 11 10 14 14 C 1.53036 * 109.54054 * 298.63862 * 13 12 11 15 15 H 1.09004 * 109.52631 * 301.39346 * 14 13 12 16 16 N 1.46901 * 109.50063 * 181.31470 * 14 13 12 17 17 C 1.46905 * 110.99870 * 85.16001 * 16 14 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00264 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99477 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46852 * 90.00344 * 25 23 21 27 27 H 1.48501 * 109.46586 * 209.99698 * 25 23 21 28 28 H 1.48495 * 109.47035 * 329.99964 * 25 23 21 29 29 C 1.46920 * 120.63008 * 180.02562 * 10 8 6 30 30 O 1.43746 * 107.29571 * 2.02332 * 6 5 4 31 31 H 1.09002 * 109.46962 * 182.87786 * 1 2 3 32 32 H 1.09000 * 109.47302 * 302.87632 * 1 2 3 33 33 H 1.08997 * 109.46938 * 62.87976 * 1 2 3 34 34 H 1.08997 * 110.91327 * 86.11653 * 4 2 1 35 35 H 1.09000 * 110.93686 * 322.52300 * 4 2 1 36 36 H 1.08998 * 110.48898 * 262.19726 * 5 4 2 37 37 H 1.09007 * 110.59577 * 139.61156 * 5 4 2 38 38 H 1.09008 * 109.58590 * 246.14945 * 11 10 8 39 39 H 1.08995 * 109.59072 * 6.43635 * 11 10 8 40 40 H 1.08996 * 109.50197 * 174.58408 * 12 11 10 41 41 H 1.08998 * 109.49429 * 294.64608 * 12 11 10 42 42 H 1.09000 * 109.46464 * 178.61469 * 13 12 11 43 43 H 1.09002 * 109.46076 * 58.65687 * 13 12 11 44 44 H 1.00901 * 111.00067 * 209.11177 * 16 14 13 45 45 H 1.09001 * 109.46798 * 300.00327 * 17 16 14 46 46 H 1.08998 * 109.46961 * 60.00043 * 17 16 14 47 47 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00444 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.58841 * 113.84789 * 29 10 8 50 50 H 1.08993 * 109.58828 * 353.42066 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2183 5 6 3.4812 -1.2119 -0.7269 6 6 3.3875 -1.1218 0.8086 7 1 4.0897 -0.3751 1.1795 8 6 3.6963 -2.4639 1.4206 9 8 2.8366 -3.0649 2.0294 10 7 4.9277 -2.9962 1.2913 11 6 5.9796 -2.2798 0.5572 12 6 7.2126 -2.1561 1.4578 13 6 7.6234 -3.5466 1.9475 14 6 6.4851 -4.1572 2.7681 15 1 6.2550 -3.5070 3.6122 16 7 6.8922 -5.4787 3.2640 17 6 7.6448 -5.3607 4.5201 18 6 8.0450 -6.7331 4.9967 19 8 7.7344 -7.7132 4.3531 20 7 8.7482 -6.8717 6.1380 21 6 9.1128 -8.1202 6.5714 22 1 8.8362 -8.9928 5.9983 23 6 9.8374 -8.2630 7.7485 24 7 10.1735 -7.2013 8.4460 25 14 10.3335 -9.9643 8.3392 26 1 11.6596 -10.3179 7.7722 27 1 10.4117 -9.9700 9.8221 28 1 9.3235 -10.9573 7.8929 29 6 5.2437 -4.3039 1.8819 30 8 2.0416 -0.7347 1.1326 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3634 0.5578 0.8631 33 1 -0.3633 0.4685 -0.9147 34 1 2.1483 -0.1451 -2.0960 35 1 1.4569 -1.6599 -1.4273 36 1 4.2403 -0.5266 -1.1038 37 1 3.7033 -2.2333 -1.0363 38 1 6.2396 -2.8355 -0.3439 39 1 5.6230 -1.2868 0.2839 40 1 8.0326 -1.7123 0.8932 41 1 6.9760 -1.5237 2.3135 42 1 8.5152 -3.4641 2.5687 43 1 7.8361 -4.1853 1.0902 44 1 6.0932 -6.0845 3.3768 45 1 8.5385 -4.7595 4.3530 46 1 7.0204 -4.8816 5.2741 47 1 8.9970 -6.0878 6.6526 48 1 10.6790 -7.3010 9.2679 49 1 5.4437 -5.0243 1.0888 50 1 4.4024 -4.6454 2.4848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209714669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:43 Heat of formation + Delta-G solvation = -141.835089 kcal Electronic energy + Delta-G solvation = -29762.010135 eV Core-core repulsion = 25594.783013 eV Total energy + Delta-G solvation = -4167.227122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80271 -40.37009 -39.89365 -38.59858 -36.47008 -35.81848 -33.55417 -33.29570 -33.21656 -32.76962 -31.10655 -28.31521 -27.70808 -26.35487 -25.50881 -23.67079 -23.19160 -22.19231 -21.47645 -21.17295 -20.22309 -19.89882 -18.39862 -17.99112 -17.64239 -17.37386 -16.90266 -16.55773 -16.49818 -16.17636 -15.68955 -15.62797 -15.38429 -15.27670 -15.00708 -14.86459 -14.63504 -14.30470 -14.09531 -13.80799 -13.61918 -13.48151 -13.38700 -13.30693 -13.24380 -12.90806 -12.69339 -12.49620 -12.43875 -12.37107 -12.13587 -11.95384 -11.88768 -11.84054 -11.68905 -11.62277 -11.52537 -11.11725 -10.50357 -10.38341 -10.04208 -9.79259 -9.43920 -8.48564 -5.97670 1.36935 1.40667 1.43387 1.53749 1.66423 2.01572 2.27920 2.78584 2.93831 3.18180 3.29591 3.42709 3.53491 3.74132 3.81794 3.85299 3.93029 4.02068 4.07125 4.18807 4.23199 4.26926 4.30671 4.41001 4.42796 4.50166 4.52178 4.57014 4.65356 4.74980 4.75839 4.77883 4.89122 4.94347 4.98365 5.00003 5.07119 5.17396 5.20740 5.26055 5.32831 5.39275 5.44755 5.84348 5.87560 6.04708 6.26331 6.31000 6.57186 7.04693 7.09996 7.52758 8.07919 8.68827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.001831 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.376313 B =15286.306453 C =15643.505858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.142 4.142 6 C 0.063 3.937 7 H 0.121 0.879 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.600 5.600 11 C 0.097 3.903 12 C -0.128 4.128 13 C -0.108 4.108 14 C 0.080 3.920 15 H 0.039 0.961 16 N -0.670 5.670 17 C 0.068 3.932 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.116 3.884 30 O -0.387 6.387 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.342 0.658 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.084 0.916 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 22.983 -22.094 33.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.003 3.997 3 H 0.114 0.886 4 C -0.184 4.184 5 C -0.179 4.179 6 C 0.002 3.998 7 H 0.138 0.862 8 C 0.293 3.707 9 O -0.462 6.462 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.030 4.030 15 H 0.057 0.943 16 N -0.303 5.303 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.007 4.007 30 O -0.307 6.307 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.161 0.839 45 H 0.126 0.874 46 H 0.077 0.923 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.234 21.973 -22.217 32.881 hybrid contribution -0.321 -0.733 1.782 1.954 sum -10.555 21.240 -20.435 31.307 Atomic orbital electron populations 1.21812 0.92910 1.02220 1.03539 1.23522 0.95815 0.96104 0.84271 0.88632 1.23221 0.95225 1.00904 0.99064 1.23088 1.00010 1.04549 0.90290 1.22781 0.87058 0.92575 0.97372 0.86205 1.21317 0.81657 0.88155 0.79525 1.90700 1.47858 1.63851 1.43748 1.48085 1.11081 1.19995 1.54285 1.22276 0.86655 0.98512 0.94890 1.21944 0.98350 0.96095 1.00300 1.21559 0.96670 0.96545 0.99857 1.21906 0.95128 0.89335 0.96645 0.94263 1.60179 1.28870 1.12008 1.29218 1.21554 1.00125 0.93415 0.91353 1.20795 0.82650 0.91828 0.82214 1.90493 1.60230 1.42062 1.58069 1.41925 1.48679 1.08902 1.21399 1.19682 1.33655 0.86112 1.07065 0.90285 1.26066 0.96405 1.03073 0.95732 1.69668 1.39121 1.30599 1.16652 0.84907 0.78650 0.77067 0.77575 1.19441 1.19496 1.19875 1.21537 0.96340 0.85221 0.97632 1.89010 1.27093 1.73951 1.40598 0.93588 0.92347 0.88324 0.86541 0.91783 0.85312 0.90439 0.88916 0.86703 0.87191 0.91705 0.91904 0.90923 0.83891 0.87446 0.92332 0.76979 0.91242 0.89775 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.66 71.98 0.70 -1.11 16 2 C 0.06 0.75 3.97 31.28 0.12 0.87 16 3 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 4 C -0.15 -1.27 6.59 31.90 0.21 -1.06 16 5 C -0.14 -1.16 5.07 31.58 0.16 -1.00 16 6 C 0.06 1.02 2.96 30.22 0.09 1.11 16 7 H 0.12 1.26 7.50 -2.39 -0.02 1.25 16 8 C 0.50 12.46 6.89 87.66 0.60 13.07 16 9 O -0.58 -21.28 15.94 15.67 0.25 -21.03 16 10 N -0.60 -11.75 2.97 -818.84 -2.43 -14.19 16 11 C 0.10 0.96 5.60 86.36 0.48 1.44 16 12 C -0.13 -1.43 6.08 30.67 0.19 -1.25 16 13 C -0.11 -2.06 5.40 30.62 0.17 -1.89 16 14 C 0.08 2.00 2.64 45.00 0.12 2.12 16 15 H 0.04 1.04 7.80 -2.38 -0.02 1.02 16 16 N -0.67 -22.02 5.93 -495.10 -2.94 -24.96 16 17 C 0.07 2.43 5.97 85.55 0.51 2.94 16 18 C 0.44 21.45 7.82 87.66 0.69 22.13 16 19 O -0.62 -35.36 15.78 -3.08 -0.05 -35.41 16 20 N -0.57 -30.06 5.29 -306.99 -1.62 -31.68 16 21 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.87 7.16 -2.92 -0.02 4.85 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 25 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 C 0.12 2.87 5.70 86.38 0.49 3.36 16 30 O -0.39 -8.69 10.45 -130.27 -1.36 -10.05 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.06 0.77 8.06 -2.39 -0.02 0.75 16 36 H 0.13 0.04 7.72 -2.39 -0.02 0.02 16 37 H 0.08 0.78 7.50 -2.38 -0.02 0.76 16 38 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.11 0.44 4.83 -2.39 -0.01 0.43 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.29 7.44 -2.39 -0.02 1.28 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.34 12.23 8.06 -89.69 -0.72 11.50 16 45 H 0.11 3.41 7.43 -2.39 -0.02 3.39 16 46 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 47 H 0.40 19.76 7.90 -92.70 -0.73 19.02 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.06 1.94 7.00 -2.39 -0.02 1.93 16 Total: -1.00 -81.71 396.00 -0.53 -82.24 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.50 Total: 37.57 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.81 Total: 21.87 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.71 Total: -120.76 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.16 Total: -66.49 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.71 -0.53 -82.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209714669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.594 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds