Wall clock time and date at job start Tue Mar 31 2020 23:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38812 * 119.99383 * 164.03306 * 6 5 4 9 9 N 1.31611 * 120.00597 * 350.53212 * 8 6 5 10 10 Si 1.86807 * 119.99635 * 170.25783 * 8 6 5 11 11 H 1.48502 * 109.46980 * 84.94616 * 10 8 6 12 12 H 1.48493 * 109.46954 * 204.94631 * 10 8 6 13 13 H 1.48497 * 109.47177 * 324.95034 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.50695 * 109.47230 * 179.97438 * 21 20 18 23 23 O 1.21285 * 120.00227 * 0.02562 * 22 21 20 24 24 N 1.34774 * 119.99974 * 180.02562 * 22 21 20 25 25 C 1.47152 * 120.98360 * 359.71621 * 24 22 21 26 26 C 1.53719 * 108.16039 * 129.43344 * 25 24 22 27 27 O 1.42963 * 109.14504 * 52.54140 * 26 25 24 28 28 C 1.42960 * 114.16644 * 297.28887 * 27 26 25 29 29 C 1.47150 * 120.98249 * 180.02562 * 24 22 21 30 30 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 31 31 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 32 32 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 33 33 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 34 34 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 35 35 H 0.96998 * 120.00687 * 179.72516 * 9 8 6 36 36 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 37 37 H 1.09000 * 110.36876 * 265.41061 * 14 5 4 38 38 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 39 39 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 40 40 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 41 41 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 42 42 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 43 43 H 1.08994 * 109.68405 * 249.21515 * 25 24 22 44 44 H 1.09003 * 109.68183 * 9.76966 * 25 24 22 45 45 H 1.08995 * 109.65522 * 292.57604 * 26 25 24 46 46 H 1.09001 * 109.44013 * 172.37474 * 26 25 24 47 47 H 1.09003 * 109.50916 * 302.65542 * 28 27 26 48 48 H 1.08997 * 109.55357 * 182.53314 * 28 27 26 49 49 H 1.09007 * 109.68525 * 350.23546 * 29 24 22 50 50 H 1.09004 * 109.68205 * 110.74548 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2548 -2.8024 -1.0494 9 7 5.7902 -2.2313 0.0085 10 14 6.1743 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1228 -4.8155 -1.0070 13 1 5.2045 -5.1654 -2.4487 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6926 0.4535 7.2937 23 8 2.7258 1.6582 7.1572 24 7 2.7868 -0.0881 8.5242 25 6 2.7428 -1.5465 8.7153 26 6 3.9428 -1.9521 9.5861 27 8 3.9502 -1.1566 10.7740 28 6 4.1159 0.2439 10.5395 29 6 2.9300 0.7616 9.7169 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0562 33 1 2.3813 -0.1004 -1.9963 34 1 1.3155 -1.4715 -1.5803 35 1 6.6622 -2.5155 0.3241 36 1 3.7960 -2.1405 1.2206 37 1 4.1945 -0.4477 0.7993 38 1 2.2480 1.0365 2.2788 39 1 3.3696 1.0180 4.7291 40 1 1.5985 1.0849 4.8940 41 1 1.6377 -1.0327 6.1829 42 1 3.4088 -1.1002 6.0184 43 1 1.8138 -1.8236 9.2134 44 1 2.8043 -2.0456 7.7481 45 1 4.8682 -1.7899 9.0336 46 1 3.8573 -3.0053 9.8538 47 1 5.0420 0.4139 9.9904 48 1 4.1557 0.7711 11.4926 49 1 3.1156 1.7921 9.4135 50 1 2.0192 0.7132 10.3137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210825157.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:08 Heat of formation + Delta-G solvation = -119.934646 kcal Electronic energy + Delta-G solvation = -29928.308198 eV Core-core repulsion = 25762.030751 eV Total energy + Delta-G solvation = -4166.277448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52427 -40.86199 -39.45139 -39.04059 -35.85312 -35.61970 -34.33588 -33.95580 -32.32942 -32.19697 -29.80272 -28.97445 -27.48779 -26.60744 -25.23635 -24.77188 -23.06956 -22.22810 -21.56310 -20.83004 -20.10692 -18.88647 -18.81213 -17.72107 -17.36169 -17.32566 -17.21470 -16.85940 -16.60659 -16.26136 -16.05226 -15.82877 -15.68392 -15.26534 -14.81599 -14.72914 -14.45422 -14.30770 -14.13681 -13.94960 -13.64742 -13.57903 -13.26523 -13.11711 -13.02276 -12.82869 -12.68534 -12.63666 -12.38659 -12.24615 -12.20297 -12.01143 -11.88216 -11.77852 -11.69382 -11.44074 -11.27096 -10.90831 -10.86817 -10.71850 -9.97126 -9.66771 -8.85190 -7.91291 -5.29686 1.42967 1.46079 1.47579 1.54650 1.67281 1.73249 2.25470 2.48727 2.83883 3.28606 3.36464 3.64355 3.69693 3.74131 3.77662 3.98443 4.02016 4.05083 4.06553 4.08714 4.11578 4.20789 4.25932 4.46394 4.53704 4.60760 4.61948 4.65059 4.65379 4.73973 4.80836 4.83619 4.90081 4.90618 4.91893 5.05774 5.09742 5.23263 5.33173 5.35285 5.38775 5.49566 5.56594 5.74494 6.07057 6.17603 6.18860 6.62535 6.99412 7.03272 7.32722 7.72627 8.39653 9.20045 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.002383 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.805897 B =11749.279452 C =13325.782839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.094 0.906 4 C 0.132 3.868 5 N -0.625 5.625 6 C -0.250 4.250 7 H 0.080 0.920 8 C -0.063 4.063 9 N -0.945 5.945 10 Si 0.978 3.022 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.184 3.816 15 C 0.138 3.862 16 H 0.073 0.927 17 N -0.704 5.704 18 C 0.511 3.489 19 O -0.583 6.583 20 C -0.112 4.112 21 C -0.119 4.119 22 C 0.521 3.479 23 O -0.573 6.573 24 N -0.619 5.619 25 C 0.067 3.933 26 C 0.044 3.956 27 O -0.394 6.394 28 C 0.050 3.950 29 C 0.074 3.926 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.247 0.753 36 H 0.009 0.991 37 H 0.004 0.996 38 H 0.415 0.585 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.128 0.872 47 H 0.050 0.950 48 H 0.128 0.872 49 H 0.092 0.908 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 7.218 19.623 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 H 0.113 0.887 4 C 0.007 3.993 5 N -0.351 5.351 6 C -0.379 4.379 7 H 0.098 0.902 8 C -0.257 4.257 9 N -0.592 5.592 10 Si 0.805 3.195 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.058 3.942 15 C 0.031 3.969 16 H 0.091 0.909 17 N -0.355 5.355 18 C 0.298 3.702 19 O -0.463 6.463 20 C -0.152 4.152 21 C -0.159 4.159 22 C 0.311 3.689 23 O -0.453 6.453 24 N -0.353 5.353 25 C -0.055 4.055 26 C -0.034 4.034 27 O -0.313 6.313 28 C -0.028 4.028 29 C -0.048 4.048 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.251 0.749 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.146 0.854 47 H 0.069 0.931 48 H 0.146 0.854 49 H 0.110 0.890 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.881 6.833 19.825 23.181 hybrid contribution 1.167 -0.330 -0.883 1.500 sum -8.714 6.502 18.942 21.841 Atomic orbital electron populations 1.21691 0.91673 1.02128 1.03114 1.22351 0.97626 0.98952 0.92305 0.88750 1.21624 0.88888 0.93205 0.95599 1.44660 1.32628 1.50948 1.06909 1.19375 0.96441 1.19599 1.02460 0.90191 1.25797 0.97536 1.02737 0.99638 1.70155 1.17166 1.44276 1.27644 0.85122 0.78086 0.78900 0.77350 1.20522 1.22084 1.19481 1.21291 0.92482 0.96319 0.84151 1.22111 0.96634 0.93286 0.84873 0.90898 1.45739 1.73748 1.10735 1.05275 1.21149 0.74818 0.88901 0.85288 1.90696 1.51580 1.17179 1.86815 1.21303 1.06543 0.97657 0.89708 1.21353 1.06136 0.98015 0.90403 1.20846 0.74824 0.88522 0.84710 1.90677 1.51932 1.16456 1.86188 1.48260 1.72595 1.08347 1.06117 1.22783 1.00755 0.79008 1.02965 1.23212 0.96771 0.97139 0.86230 1.87953 1.93952 1.18164 1.31196 1.23073 0.96113 0.81898 1.01676 1.22387 1.00280 0.96086 0.86030 0.90991 0.90534 0.93254 0.95466 0.94752 0.94403 0.97208 0.97805 0.74855 0.87846 0.86341 0.86998 0.88185 0.88830 0.87423 0.92805 0.85386 0.93124 0.85426 0.88952 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.16 71.98 0.66 -2.32 16 2 C -0.09 -2.89 3.16 -9.60 -0.03 -2.93 16 3 H 0.09 2.61 8.00 -2.38 -0.02 2.59 16 4 C 0.13 5.35 6.85 86.73 0.59 5.94 16 5 N -0.62 -33.10 3.39 -691.96 -2.35 -35.45 16 6 C -0.25 -14.44 10.21 84.03 0.86 -13.58 16 7 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 8 C -0.06 -3.71 5.38 84.86 0.46 -3.26 16 9 N -0.95 -58.98 10.92 21.65 0.24 -58.74 16 10 Si 0.98 46.90 29.57 68.60 2.03 48.93 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.18 9.44 5.06 86.86 0.44 9.88 16 15 C 0.14 5.17 2.77 46.39 0.13 5.30 16 16 H 0.07 3.02 7.63 -2.39 -0.02 3.00 16 17 N -0.70 -21.01 5.23 -435.96 -2.28 -23.30 16 18 C 0.51 15.78 7.83 87.66 0.69 16.47 16 19 O -0.58 -23.08 15.73 -3.03 -0.05 -23.13 16 20 C -0.11 -2.53 4.99 29.85 0.15 -2.38 16 21 C -0.12 -2.49 3.36 29.85 0.10 -2.39 16 22 C 0.52 11.42 7.71 87.66 0.68 12.09 16 23 O -0.57 -15.94 15.45 -3.05 -0.05 -15.98 16 24 N -0.62 -10.82 3.01 -816.46 -2.46 -13.28 16 25 C 0.07 0.86 6.57 86.50 0.57 1.43 16 26 C 0.04 0.55 7.00 72.22 0.51 1.06 16 27 O -0.39 -6.21 10.74 -148.98 -1.60 -7.81 16 28 C 0.05 0.65 6.99 72.09 0.50 1.15 16 29 C 0.07 1.12 6.64 86.37 0.57 1.69 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 1.35 7.77 -2.39 -0.02 1.33 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.01 0.58 7.33 -2.39 -0.02 0.56 16 37 H 0.00 0.22 7.94 -2.39 -0.02 0.20 16 38 H 0.41 9.38 8.52 -92.71 -0.79 8.59 16 39 H 0.10 2.33 8.10 -2.39 -0.02 2.31 16 40 H 0.12 2.22 8.10 -2.39 -0.02 2.20 16 41 H 0.11 2.13 7.96 -2.39 -0.02 2.11 16 42 H 0.10 2.19 7.63 -2.38 -0.02 2.17 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.11 1.29 6.05 -2.39 -0.01 1.27 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.59 7.08 -2.38 -0.02 1.57 16 50 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -81.13 398.64 0.49 -80.64 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.14 Total: 19.95 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 6.87 Total: 28.16 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.85 Total: -130.76 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.69 Total: -46.92 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -81.13 0.49 -80.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210825157.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal (2) G-P(sol) polarization free energy of solvation -81.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds