Wall clock time and date at job start Tue Mar 31 2020 23:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.77756 * 2 1 4 4 C 1.54317 * 110.72002 * 236.75709 * 2 1 3 5 5 N 1.47027 * 107.27076 * 219.44300 * 4 2 1 6 6 C 1.36933 * 125.64899 * 178.98490 * 5 4 2 7 7 H 1.07997 * 120.00382 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99861 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00315 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47132 * 59.99799 * 10 8 6 12 12 H 1.48497 * 109.47223 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46871 * 300.00223 * 10 8 6 14 14 C 1.47427 * 108.70181 * 358.93861 * 5 4 2 15 15 C 1.54915 * 104.83057 * 24.13279 * 14 5 4 16 16 H 1.08995 * 111.04048 * 81.07865 * 15 14 5 17 17 N 1.46500 * 110.99944 * 204.91357 * 15 14 5 18 18 C 1.34769 * 120.00240 * 267.19086 * 17 15 14 19 19 O 1.21285 * 120.00215 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00379 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47609 * 180.02562 * 20 18 17 22 22 N 1.46497 * 109.47279 * 180.02562 * 21 20 18 23 23 C 1.34779 * 119.99659 * 180.02562 * 22 21 20 24 24 O 1.21283 * 120.00455 * 359.97438 * 23 22 21 25 25 C 1.50700 * 119.99989 * 179.97438 * 23 22 21 26 26 H 1.09004 * 110.32925 * 302.75230 * 25 23 22 27 27 C 1.54478 * 110.37139 * 64.99736 * 25 23 22 28 28 C 1.54510 * 104.06500 * 142.81210 * 27 25 23 29 29 C 1.54477 * 104.18108 * 359.93120 * 28 27 25 30 30 O 1.44415 * 110.37723 * 180.37967 * 25 23 22 31 31 H 1.08998 * 109.47003 * 296.76650 * 1 2 3 32 32 H 1.08995 * 109.46941 * 56.76768 * 1 2 3 33 33 H 1.08997 * 109.47204 * 176.76738 * 1 2 3 34 34 H 1.09002 * 109.88435 * 338.85637 * 4 2 1 35 35 H 1.09000 * 109.88593 * 99.87549 * 4 2 1 36 36 H 0.96999 * 120.00916 * 179.97438 * 9 8 6 37 37 H 1.08998 * 110.37394 * 265.28921 * 14 5 4 38 38 H 1.09004 * 110.36571 * 142.96371 * 14 5 4 39 39 H 0.97006 * 120.00034 * 87.19497 * 17 15 14 40 40 H 1.09005 * 109.47196 * 60.00429 * 20 18 17 41 41 H 1.08991 * 109.47102 * 300.00501 * 20 18 17 42 42 H 1.08998 * 109.46868 * 59.99746 * 21 20 18 43 43 H 1.09006 * 109.46794 * 300.00523 * 21 20 18 44 44 H 0.96993 * 120.00475 * 359.97438 * 22 21 20 45 45 H 1.09000 * 110.51268 * 24.16636 * 27 25 23 46 46 H 1.09007 * 110.63128 * 261.51455 * 27 25 23 47 47 H 1.09002 * 110.51305 * 118.64650 * 28 27 25 48 48 H 1.08994 * 110.51141 * 241.21979 * 28 27 25 49 49 H 1.09006 * 110.37498 * 94.92285 * 29 28 27 50 50 H 1.09000 * 110.37254 * 217.25804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5508 -0.7388 6 6 4.0044 -2.3969 -1.5015 7 1 3.7618 -2.5502 -2.5427 8 6 5.0866 -3.0576 -0.9365 9 7 5.3820 -2.8712 0.3325 10 14 6.1237 -4.2113 -1.9771 11 1 6.7159 -3.4575 -3.1112 12 1 7.2096 -4.7878 -1.1443 13 1 5.2694 -5.3063 -2.5029 14 6 3.4633 -1.2496 0.6877 15 6 2.0789 -0.7953 1.2139 16 1 1.4448 -1.6530 1.4381 17 7 2.2214 0.0698 2.3876 18 6 2.1872 -0.4624 3.6252 19 8 2.0389 -1.6577 3.7675 20 6 2.3333 0.4276 4.8325 21 6 2.2604 -0.4210 6.1036 22 7 2.4017 0.4444 7.2772 23 6 2.3685 -0.0881 8.5149 24 8 2.2210 -1.2835 8.6571 25 6 2.5144 0.8019 9.7223 26 1 3.4503 1.3584 9.6715 27 6 1.3167 1.7722 9.8230 28 6 1.0436 1.8753 11.3403 29 6 2.1065 0.9545 11.9796 30 8 2.4577 0.0186 10.9342 31 1 -0.3633 0.4628 0.9175 32 1 -0.3633 0.5632 -0.8596 33 1 -0.3633 -1.0260 -0.0579 34 1 1.3130 -1.4760 -1.5774 35 1 2.3716 -0.1027 -1.9987 36 1 6.1379 -3.3332 0.7275 37 1 4.1932 -0.4477 0.7986 38 1 3.7960 -2.1425 1.2172 39 1 2.3404 1.0258 2.2738 40 1 1.5297 1.1640 4.8404 41 1 3.2947 0.9394 4.7925 42 1 3.0641 -1.1571 6.0955 43 1 1.2990 -0.9332 6.1438 44 1 2.5200 1.4003 7.1636 45 1 0.4489 1.3628 9.3058 46 1 1.5779 2.7486 9.4147 47 1 1.1722 2.9022 11.6826 48 1 0.0401 1.5192 11.5729 49 1 2.9801 1.5338 12.2786 50 1 1.6868 0.4290 12.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211466111.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:25 Heat of formation + Delta-G solvation = -126.512418 kcal Electronic energy + Delta-G solvation = -29338.006017 eV Core-core repulsion = 25171.443336 eV Total energy + Delta-G solvation = -4166.562681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39549 -40.92561 -39.49812 -39.10503 -36.32660 -35.62291 -34.31024 -33.24990 -32.31614 -32.11071 -30.43902 -29.31145 -27.39987 -25.96579 -25.05239 -23.91911 -22.46421 -22.21329 -21.67129 -21.54375 -20.78230 -18.93374 -18.68816 -18.16532 -17.55313 -17.27013 -17.08848 -16.86395 -16.77237 -16.13063 -15.74945 -15.67178 -15.51923 -15.19759 -14.73596 -14.51450 -14.42464 -14.37957 -14.22164 -14.08431 -13.84247 -13.37454 -13.07509 -12.92579 -12.82048 -12.79299 -12.68282 -12.59026 -12.46144 -12.26520 -12.24266 -12.02029 -11.84332 -11.67620 -11.64524 -11.40422 -11.11440 -10.90902 -10.77126 -10.67090 -10.24162 -9.94319 -8.90786 -7.78683 -5.25064 1.42769 1.47142 1.48231 1.53535 1.67463 1.73079 2.34312 2.49709 3.08148 3.30432 3.45982 3.62366 3.69550 3.72732 3.74901 3.94919 4.04048 4.07284 4.08443 4.09917 4.13587 4.23902 4.40228 4.49788 4.59921 4.64042 4.67614 4.70244 4.82454 4.85156 4.90078 4.92790 4.95672 5.04148 5.04976 5.10014 5.15897 5.24214 5.28993 5.32014 5.45047 5.50457 5.67612 5.75540 5.81383 6.27742 6.48996 6.67136 7.06206 7.18764 7.39081 7.76129 8.38094 9.21262 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.001979 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.696078 B =14145.554072 C =15453.317190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.085 0.915 8 C -0.073 4.073 9 N -0.949 5.949 10 Si 0.982 3.018 11 H -0.272 1.272 12 H -0.297 1.297 13 H -0.278 1.278 14 C 0.155 3.845 15 C 0.135 3.865 16 H 0.062 0.938 17 N -0.697 5.697 18 C 0.506 3.494 19 O -0.594 6.594 20 C -0.129 4.129 21 C 0.139 3.861 22 N -0.702 5.702 23 C 0.507 3.493 24 O -0.583 6.583 25 C 0.058 3.942 26 H 0.128 0.872 27 C -0.139 4.139 28 C -0.150 4.150 29 C 0.032 3.968 30 O -0.394 6.394 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.244 0.756 37 H -0.004 1.004 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.425 0.575 45 H 0.068 0.932 46 H 0.127 0.873 47 H 0.110 0.890 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 23.053 18.136 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.121 0.879 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.103 0.897 8 C -0.265 4.265 9 N -0.599 5.599 10 Si 0.810 3.190 11 H -0.198 1.198 12 H -0.223 1.223 13 H -0.204 1.204 14 C 0.028 3.972 15 C 0.028 3.972 16 H 0.081 0.919 17 N -0.349 5.349 18 C 0.293 3.707 19 O -0.474 6.474 20 C -0.169 4.169 21 C 0.014 3.986 22 N -0.358 5.358 23 C 0.294 3.706 24 O -0.462 6.462 25 C -0.003 4.003 26 H 0.145 0.855 27 C -0.177 4.177 28 C -0.187 4.187 29 C -0.044 4.044 30 O -0.313 6.313 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.075 0.925 39 H 0.256 0.744 40 H 0.166 0.834 41 H 0.151 0.849 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.264 0.736 45 H 0.087 0.913 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.572 21.019 18.350 29.838 hybrid contribution 1.067 -0.627 -0.710 1.427 sum -9.505 20.392 17.640 28.589 Atomic orbital electron populations 1.21690 0.92107 1.01719 1.03159 1.22370 0.97317 0.99156 0.92229 0.87905 1.21624 0.88540 0.93320 0.95920 1.44689 1.32028 1.50877 1.07761 1.19456 1.06474 1.17413 0.93551 0.89676 1.25730 1.00523 1.02612 0.97613 1.70107 1.30197 1.47080 1.12483 0.85101 0.77835 0.78680 0.77428 1.19756 1.22318 1.20360 1.21904 0.92265 0.98264 0.84746 1.22123 0.96965 0.93105 0.85001 0.91937 1.45618 1.73229 1.11622 1.04420 1.21215 0.75136 0.88688 0.85652 1.90773 1.50982 1.18707 1.86972 1.21723 1.08520 0.98236 0.88415 1.20785 1.01348 0.92669 0.83778 1.45571 1.73888 1.12360 1.03937 1.21054 0.75583 0.88487 0.85487 1.90750 1.49952 1.18550 1.86911 1.23081 1.02728 0.90761 0.83693 0.85506 1.22996 0.96245 1.00319 0.98147 1.22961 0.99795 1.02022 0.93949 1.23805 0.98381 0.91348 0.90898 1.89294 1.91410 1.33434 1.17157 0.90908 0.90365 0.94058 0.95547 0.94806 0.94644 0.98635 0.92509 0.74382 0.83372 0.84900 0.94125 0.92895 0.73639 0.91301 0.85429 0.87136 0.90848 0.89883 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.16 71.98 0.66 -2.33 16 2 C -0.09 -2.75 3.19 -9.61 -0.03 -2.78 16 3 H 0.10 2.54 8.00 -2.38 -0.02 2.52 16 4 C 0.13 5.23 6.84 86.73 0.59 5.82 16 5 N -0.63 -33.02 3.39 -691.97 -2.35 -35.36 16 6 C -0.24 -13.85 10.27 84.03 0.86 -12.99 16 7 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 8 C -0.07 -4.29 5.49 84.86 0.47 -3.83 16 9 N -0.95 -59.94 10.09 21.65 0.22 -59.73 16 10 Si 0.98 47.52 29.55 68.60 2.03 49.54 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.15 7.89 5.58 86.86 0.49 8.38 16 15 C 0.14 5.10 2.87 46.39 0.13 5.23 16 16 H 0.06 2.78 7.44 -2.39 -0.02 2.76 16 17 N -0.70 -19.24 5.20 -435.96 -2.27 -21.50 16 18 C 0.51 15.16 7.83 87.66 0.69 15.85 16 19 O -0.59 -25.88 15.62 -3.04 -0.05 -25.93 16 20 C -0.13 -2.09 5.81 29.85 0.17 -1.91 16 21 C 0.14 3.31 4.96 86.38 0.43 3.74 16 22 N -0.70 -11.42 5.54 -463.06 -2.56 -13.99 16 23 C 0.51 12.10 7.08 87.66 0.62 12.72 16 24 O -0.58 -21.99 16.55 15.34 0.25 -21.73 16 25 C 0.06 0.89 3.71 30.35 0.11 1.00 16 26 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 27 C -0.14 -1.06 6.61 31.61 0.21 -0.85 16 28 C -0.15 -1.01 7.08 31.61 0.22 -0.79 16 29 C 0.03 0.36 7.65 72.48 0.55 0.92 16 30 O -0.39 -8.86 10.91 -130.60 -1.43 -10.29 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.03 1.06 7.77 -2.39 -0.02 1.04 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.06 3.55 5.87 -2.38 -0.01 3.53 16 39 H 0.42 7.50 8.57 -92.70 -0.79 6.71 16 40 H 0.15 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 43 H 0.05 1.54 8.10 -2.38 -0.02 1.52 16 44 H 0.42 2.35 8.47 -92.71 -0.79 1.56 16 45 H 0.07 0.72 7.86 -2.39 -0.02 0.70 16 46 H 0.13 -0.04 8.14 -2.38 -0.02 -0.06 16 47 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -96.90 404.42 -0.61 -97.51 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.63 Total: 13.30 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 6.18 Total: 28.19 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.96 Total: -130.58 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -1.22 Total: -57.95 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -96.90 -0.61 -97.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211466111.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.007 kcal (2) G-P(sol) polarization free energy of solvation -96.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds