Wall clock time and date at job start Tue Mar 31 2020 23:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20763 * 120.00124 * 2 1 4 4 C 1.50701 * 119.99878 * 179.71634 * 2 1 3 5 5 C 1.52996 * 109.46972 * 180.27426 * 4 2 1 6 6 C 1.53000 * 109.47273 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47453 * 180.02562 * 6 5 4 8 8 O 1.21273 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00072 * 180.02562 * 7 6 5 10 10 C 1.47494 * 127.03259 * 0.02699 * 9 7 6 11 11 C 1.54006 * 107.08256 * 154.51603 * 10 9 7 12 12 H 1.08998 * 110.32636 * 120.19534 * 11 10 9 13 13 C 1.53001 * 110.32614 * 242.41542 * 11 10 9 14 14 C 1.54624 * 105.04259 * 1.30320 * 11 10 9 15 15 H 1.08997 * 110.74079 * 263.51309 * 14 11 10 16 16 N 1.46901 * 110.73561 * 140.36878 * 14 11 10 17 17 C 1.46899 * 110.99800 * 155.00113 * 16 14 11 18 18 C 1.50708 * 109.46851 * 179.97438 * 17 16 14 19 19 O 1.21290 * 120.00204 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99656 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99904 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99693 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00236 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00232 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46727 * 90.00073 * 25 23 21 27 27 H 1.48501 * 109.47236 * 209.99826 * 25 23 21 28 28 H 1.48494 * 109.46825 * 330.00074 * 25 23 21 29 29 C 1.48119 * 127.03510 * 179.71077 * 9 7 6 30 30 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 120.00463 * 1 2 3 32 32 H 1.08994 * 109.46990 * 240.00317 * 1 2 3 33 33 H 1.08994 * 109.47178 * 300.27850 * 4 2 1 34 34 H 1.09006 * 109.46629 * 60.28046 * 4 2 1 35 35 H 1.09000 * 109.47764 * 300.00587 * 5 4 2 36 36 H 1.09006 * 109.46938 * 60.00809 * 5 4 2 37 37 H 1.09000 * 109.47116 * 300.00875 * 6 5 4 38 38 H 1.08998 * 109.46722 * 60.00199 * 6 5 4 39 39 H 1.08994 * 109.91216 * 273.87808 * 10 9 7 40 40 H 1.08998 * 109.91262 * 34.96657 * 10 9 7 41 41 H 1.09002 * 109.47503 * 58.54535 * 13 11 10 42 42 H 1.08999 * 109.47173 * 178.54713 * 13 11 10 43 43 H 1.09000 * 109.47239 * 298.54506 * 13 11 10 44 44 H 1.00899 * 111.00355 * 31.04514 * 16 14 11 45 45 H 1.08995 * 109.47086 * 299.99316 * 17 16 14 46 46 H 1.08996 * 109.46946 * 60.00125 * 17 16 14 47 47 H 0.96997 * 120.00376 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99669 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.65711 * 337.77120 * 29 9 7 50 50 H 1.08991 * 110.66022 * 100.88545 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0065 5 6 3.7647 -1.0255 0.0120 6 6 4.5297 -2.3505 0.0179 7 6 6.0114 -2.0751 0.0240 8 8 6.4156 -0.9318 0.0241 9 7 6.8872 -3.0995 0.0293 10 6 6.5695 -4.5398 0.0294 11 6 7.7727 -5.2686 -0.5974 12 1 8.1967 -5.9791 0.1121 13 6 7.3499 -5.9856 -1.8812 14 6 8.7952 -4.1535 -0.9170 15 1 8.7128 -3.8410 -1.9579 16 7 10.1622 -4.5997 -0.6165 17 6 11.1455 -3.8613 -1.4200 18 6 12.5330 -4.3447 -1.0847 19 8 12.6874 -5.2188 -0.2581 20 7 13.6022 -3.8058 -1.7034 21 6 14.8644 -4.2460 -1.3988 22 1 15.0018 -5.0243 -0.6627 23 6 15.9667 -3.6908 -2.0369 24 7 15.7993 -2.7441 -2.9330 25 14 17.6865 -4.2901 -1.6214 26 1 18.0477 -5.4178 -2.5174 27 1 18.6557 -3.1804 -1.8070 28 1 17.7232 -4.7483 -0.2094 29 6 8.3656 -3.0093 0.0296 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 1.9934 -1.8744 0.8967 34 1 2.0009 -1.8789 -0.8833 35 1 4.0318 -0.4561 -0.8783 36 1 4.0243 -0.4517 0.9017 37 1 4.2627 -2.9203 0.9079 38 1 4.2700 -2.9239 -0.8720 39 1 6.4170 -4.8862 1.0516 40 1 5.6722 -4.7221 -0.5619 41 1 6.9406 -5.2604 -2.5845 42 1 8.2163 -6.4746 -2.3265 43 1 6.5915 -6.7327 -1.6471 44 1 10.2564 -5.5948 -0.7546 45 1 10.9483 -4.0281 -2.4789 46 1 11.0689 -2.7966 -1.1994 47 1 13.4787 -3.1071 -2.3647 48 1 16.5689 -2.3568 -3.3787 49 1 8.6921 -2.0453 -0.3606 50 1 8.7606 -3.1733 1.0321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214133604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:12 Heat of formation + Delta-G solvation = -119.137003 kcal Electronic energy + Delta-G solvation = -28692.473861 eV Core-core repulsion = 24526.231002 eV Total energy + Delta-G solvation = -4166.242859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.41706 -39.81458 -38.55663 -37.86878 -34.75318 -34.63908 -33.79814 -32.55200 -31.25239 -31.20201 -29.53693 -28.01930 -26.64341 -26.20213 -24.24446 -22.90393 -21.88855 -20.44799 -20.02815 -19.48188 -19.07319 -17.87338 -17.29622 -16.79123 -16.38400 -16.20708 -15.78309 -15.54128 -15.29022 -15.14421 -14.88691 -14.57431 -14.24879 -14.08649 -13.80341 -13.68754 -13.41990 -13.19925 -13.14093 -12.97404 -12.71170 -12.47753 -12.33920 -12.27177 -12.15178 -12.07777 -11.74630 -11.60594 -11.51558 -11.28413 -11.19217 -11.12313 -11.01472 -10.72410 -10.38994 -10.21513 -10.14858 -9.87702 -9.50910 -8.87319 -8.47735 -8.13988 -7.96244 -6.41301 -3.82371 1.56768 2.48935 2.72360 3.18174 3.27043 3.33038 3.60727 3.90039 4.04286 4.11998 4.24307 4.35810 4.47368 4.53851 4.56153 4.64362 4.67349 4.81398 4.85156 4.99868 5.03655 5.08726 5.12995 5.17810 5.19839 5.21526 5.24099 5.26704 5.30194 5.52847 5.56351 5.61391 5.72479 5.74816 5.78573 5.83687 5.87792 5.94897 5.98281 6.01226 6.13089 6.28614 7.11945 7.15837 7.37976 7.55473 7.58476 8.02020 8.06134 8.60969 9.17842 9.54219 10.05223 10.76324 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022007 B = 0.001668 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.031694 B =16787.070292 C =17657.141772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.349 3.651 3 O -0.452 6.452 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.135 4.135 7 C 0.529 3.471 8 O -0.537 6.537 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.111 4.111 12 H 0.098 0.902 13 C -0.145 4.145 14 C 0.077 3.923 15 H 0.059 0.941 16 N -0.656 5.656 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.113 3.887 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.354 0.646 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.462 -2.954 2.178 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.224 3.776 3 O -0.325 6.325 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.174 4.174 7 C 0.317 3.683 8 O -0.413 6.413 9 N -0.359 5.359 10 C -0.015 4.015 11 C -0.130 4.130 12 H 0.117 0.883 13 C -0.203 4.203 14 C -0.034 4.034 15 H 0.077 0.923 16 N -0.290 5.290 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.010 4.010 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.175 0.825 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -30.662 -1.766 3.172 30.877 hybrid contribution 0.651 -0.434 -1.183 1.418 sum -30.011 -2.200 1.990 30.157 Atomic orbital electron populations 1.22335 0.94517 1.04983 1.04462 1.24641 0.91937 0.90410 0.70612 1.90468 1.71972 1.35156 1.34884 1.22158 0.96522 0.97620 1.04724 1.21174 0.91611 0.95891 1.05003 1.21651 0.91502 1.00016 1.04277 1.20310 0.88059 0.83852 0.76032 1.90750 1.80076 1.20709 1.49769 1.48808 1.07465 1.06170 1.73415 1.22167 0.98101 0.80204 1.00992 1.22302 0.94904 0.97353 0.98469 0.88347 1.21883 1.01770 1.00204 0.96432 1.22601 0.88767 0.94542 0.97539 0.92318 1.60002 1.00374 1.10173 1.58409 1.21757 0.92099 0.99392 0.95072 1.19762 0.85508 0.86413 0.85703 1.90520 1.85965 1.34005 1.36331 1.41864 1.05380 1.35445 1.37222 1.19705 0.81601 1.19638 1.22049 0.87894 1.25268 1.00234 0.96247 0.96154 1.69617 1.31993 1.26236 1.26358 0.85854 0.81247 0.78073 0.79089 1.20437 1.20913 1.19388 1.22449 0.78247 0.99416 1.00900 0.90096 0.89022 0.89012 0.88284 0.88305 0.90522 0.90507 0.88882 0.88921 0.91161 0.90702 0.92526 0.92001 0.92099 0.82523 0.93705 0.89529 0.77437 0.91853 0.89989 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.68 10.26 36.01 0.37 -0.31 16 2 C 0.35 2.34 7.27 -29.03 -0.21 2.13 16 3 O -0.45 -5.30 16.71 6.00 0.10 -5.20 16 4 C -0.17 -0.78 5.64 -27.88 -0.16 -0.94 16 5 C -0.10 -0.82 3.79 -26.73 -0.10 -0.92 16 6 C -0.13 -0.94 4.78 -27.88 -0.13 -1.08 16 7 C 0.53 6.26 7.89 -10.98 -0.09 6.18 16 8 O -0.54 -8.88 16.19 5.56 0.09 -8.79 16 9 N -0.62 -6.76 3.29 -169.98 -0.56 -7.32 16 10 C 0.11 0.82 6.42 -2.97 -0.02 0.80 16 11 C -0.11 -0.96 3.08 -89.24 -0.28 -1.24 16 12 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 13 C -0.15 -1.05 8.90 37.16 0.33 -0.72 16 14 C 0.08 0.91 2.92 -66.02 -0.19 0.72 16 15 H 0.06 0.71 7.54 -51.93 -0.39 0.32 16 16 N -0.66 -9.99 5.98 -106.20 -0.64 -10.62 16 17 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 18 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 19 O -0.58 -15.64 15.78 5.55 0.09 -15.56 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.11 1.45 6.76 -2.31 -0.02 1.44 16 30 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 36 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.45 7.91 -51.93 -0.41 0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.39 7.08 -51.93 -0.37 0.03 16 41 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.35 5.42 8.04 -39.29 -0.32 5.10 16 45 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 49 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 50 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 415.48 15.07 6.26 6.26 Total: -1.00 -36.23 415.48 -8.33 -44.55 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.47 Total: 9.79 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.85 Total: 9.08 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.53 Total: -56.25 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: 0.28 Total: -29.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.23 -8.33 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214133604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.583 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds