Wall clock time and date at job start Tue Mar 31 2020 23:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 110.91480 * 2 1 4 4 C 1.54911 * 111.00168 * 236.09867 * 2 1 3 5 5 N 1.47427 * 104.83025 * 204.91710 * 4 2 1 6 6 C 1.34776 * 125.64589 * 204.09038 * 5 4 2 7 7 O 1.21280 * 120.00186 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99998 * 0.04015 * 6 5 4 9 9 C 1.52998 * 109.46774 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.33561 * 307.24948 * 9 8 6 11 11 C 1.54486 * 110.37160 * 185.00529 * 9 8 6 12 12 C 1.54509 * 104.06138 * 217.19186 * 11 9 8 13 13 C 1.54473 * 104.06331 * 359.97438 * 12 11 9 14 14 O 1.44424 * 110.37144 * 69.62344 * 9 8 6 15 15 C 1.47017 * 108.70313 * 24.13266 * 5 4 2 16 16 C 1.54322 * 107.27153 * 358.93622 * 15 5 4 17 17 H 1.08998 * 110.72104 * 96.35610 * 16 15 5 18 18 N 1.46901 * 110.72117 * 219.44896 * 16 15 5 19 19 C 1.46902 * 110.99844 * 273.54650 * 18 16 15 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34783 * 120.00004 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99804 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00499 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99671 * 179.72159 * 23 22 20 26 26 N 1.31414 * 120.00152 * 0.27554 * 25 23 22 27 27 Si 1.86803 * 119.99914 * 180.27723 * 25 23 22 28 28 H 1.48498 * 109.47174 * 90.00084 * 27 25 23 29 29 H 1.48501 * 109.47062 * 210.00035 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99834 * 27 25 23 31 31 H 1.08999 * 109.47238 * 296.09546 * 1 2 3 32 32 H 1.09002 * 109.47285 * 56.09672 * 1 2 3 33 33 H 1.09000 * 109.47486 * 176.09882 * 1 2 3 34 34 H 1.08998 * 110.36607 * 86.07804 * 4 2 1 35 35 H 1.09006 * 110.45850 * 323.79999 * 4 2 1 36 36 H 1.08999 * 109.47353 * 300.00090 * 8 6 5 37 37 H 1.09006 * 109.46356 * 60.00524 * 8 6 5 38 38 H 1.09001 * 110.50693 * 335.83336 * 11 9 8 39 39 H 1.08995 * 110.51018 * 98.40536 * 11 9 8 40 40 H 1.09000 * 110.51172 * 118.64114 * 12 11 9 41 41 H 1.08999 * 110.50959 * 241.21555 * 12 11 9 42 42 H 1.09002 * 110.37501 * 142.81007 * 13 12 11 43 43 H 1.09007 * 110.37346 * 265.03834 * 13 12 11 44 44 H 1.09003 * 109.87626 * 239.52647 * 15 5 4 45 45 H 1.08993 * 109.88728 * 118.35984 * 15 5 4 46 46 H 1.00894 * 111.00401 * 149.59548 * 18 16 15 47 47 H 1.09004 * 109.47131 * 60.00016 * 19 18 16 48 48 H 1.08994 * 109.47471 * 299.99766 * 19 18 16 49 49 H 0.97000 * 119.99715 * 359.97438 * 22 20 19 50 50 H 0.96991 * 119.99827 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5617 -1.5941 7 8 5.5127 -1.9101 -1.1304 8 6 4.2652 -1.4847 -3.0881 9 6 5.5657 -1.8943 -3.7823 10 1 6.4019 -1.3133 -3.3934 11 6 5.4428 -1.7032 -5.3104 12 6 6.2206 -2.9000 -5.9021 13 6 6.7219 -3.6721 -4.6616 14 8 5.8066 -3.3072 -3.6052 15 6 3.4674 -1.2743 0.6959 16 6 2.0861 -0.8080 1.2021 17 1 1.4478 -1.6632 1.4239 18 7 2.2290 0.0518 2.3846 19 6 2.2896 -0.7498 3.6142 20 6 2.4365 0.1645 4.8031 21 8 2.4855 1.3657 4.6422 22 7 2.5136 -0.3526 6.0454 23 6 2.6467 0.4791 7.1271 24 1 2.6894 1.5487 6.9838 25 6 2.7203 -0.0537 8.4083 26 7 2.6677 -1.3552 8.5827 27 14 2.8939 1.0800 9.8828 28 1 1.5459 1.4513 10.3831 29 1 3.6460 0.3832 10.9571 30 1 3.6278 2.3066 9.4803 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 3.4633 -2.1577 -3.3915 37 1 4.0090 -0.4635 -3.3706 38 1 4.3973 -1.7382 -5.6168 39 1 5.8979 -0.7609 -5.6152 40 1 5.5597 -3.5265 -6.5010 41 1 7.0609 -2.5504 -6.5018 42 1 6.6834 -4.7464 -4.8421 43 1 7.7374 -3.3666 -4.4092 44 1 4.2425 -0.5998 1.0598 45 1 3.6650 -2.2894 1.0400 46 1 1.4830 0.7295 2.4313 47 1 3.1449 -1.4238 3.5667 48 1 1.3735 -1.3318 3.7140 49 1 2.4740 -1.3133 6.1742 50 1 2.7195 -1.7271 9.4770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214193044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:24 Heat of formation + Delta-G solvation = -144.886523 kcal Electronic energy + Delta-G solvation = -29326.826209 eV Core-core repulsion = 25159.466767 eV Total energy + Delta-G solvation = -4167.359442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38036 -40.38399 -39.99070 -38.86920 -36.22666 -35.57684 -33.59321 -33.30862 -33.19735 -32.59940 -30.24440 -28.31718 -27.38398 -27.00439 -25.83200 -23.48350 -22.71585 -21.90680 -21.39815 -20.97246 -20.30526 -19.88248 -18.30207 -17.98176 -17.53741 -17.06279 -16.90603 -16.73445 -16.53414 -16.28651 -15.95612 -15.91505 -15.42345 -15.25478 -14.88848 -14.68872 -14.49574 -14.10835 -13.99190 -13.75200 -13.54380 -13.44954 -13.31433 -13.10485 -13.05286 -12.90442 -12.72015 -12.60135 -12.43475 -12.25958 -12.14017 -12.07582 -12.06262 -11.95942 -11.52042 -11.49831 -11.45293 -10.88823 -10.71185 -10.37192 -10.03494 -9.68704 -9.44104 -8.48061 -5.97106 1.37035 1.40810 1.53899 1.63862 1.90328 2.02658 2.28149 2.87907 2.97636 3.18978 3.32192 3.48685 3.50074 3.64462 3.73188 3.92397 4.05230 4.07352 4.15854 4.17800 4.26702 4.27419 4.33891 4.45066 4.48973 4.54384 4.54964 4.57818 4.60345 4.73562 4.75281 4.85365 4.87263 4.92815 4.93456 4.98874 5.02972 5.14754 5.21869 5.24024 5.26934 5.39446 5.43525 5.86516 5.95850 6.06771 6.36016 6.53061 6.57840 7.10591 7.16217 7.53857 8.08717 8.69336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.001861 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.742894 B =15042.084788 C =15964.027021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.620 5.620 6 C 0.516 3.484 7 O -0.587 6.587 8 C -0.120 4.120 9 C 0.080 3.920 10 H 0.051 0.949 11 C -0.143 4.143 12 C -0.149 4.149 13 C 0.032 3.968 14 O -0.397 6.397 15 C 0.114 3.886 16 C 0.083 3.917 17 H 0.077 0.923 18 N -0.671 5.671 19 C 0.065 3.935 20 C 0.438 3.562 21 O -0.622 6.622 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.080 0.920 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.995 3.005 28 H -0.268 1.268 29 H -0.271 1.271 30 H -0.274 1.274 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.354 0.646 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -3.907 -32.066 32.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.016 4.016 5 N -0.353 5.353 6 C 0.307 3.693 7 O -0.467 6.467 8 C -0.159 4.159 9 C 0.022 3.978 10 H 0.069 0.931 11 C -0.180 4.180 12 C -0.187 4.187 13 C -0.045 4.045 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.027 4.027 17 H 0.094 0.906 18 N -0.305 5.305 19 C -0.068 4.068 20 C 0.226 3.774 21 O -0.508 6.508 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.098 0.902 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.194 1.194 29 H -0.196 1.196 30 H -0.199 1.199 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.175 0.825 47 H 0.112 0.888 48 H 0.091 0.909 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.259 -3.521 -31.697 31.972 hybrid contribution -0.164 -0.351 1.580 1.626 sum -2.423 -3.872 -30.117 30.462 Atomic orbital electron populations 1.21719 0.91612 1.03263 1.03008 1.22509 0.97543 0.99429 0.92331 0.89525 1.22691 0.81360 0.99398 0.98161 1.48574 1.13782 1.66815 1.06177 1.21133 0.82021 0.75815 0.90349 1.90719 1.28241 1.49046 1.78727 1.21842 0.99542 1.06474 0.88070 1.22854 0.96208 0.82876 0.95887 0.93060 1.23004 1.03159 0.99806 0.92077 1.22931 1.01244 0.97017 0.97516 1.23581 0.93053 1.01162 0.86703 1.89203 1.65536 1.24270 1.52630 1.21837 0.98507 0.99931 0.80716 1.22624 0.94015 0.95726 0.90335 0.90554 1.59913 1.53712 1.16733 1.00182 1.21580 1.02757 0.94407 0.88035 1.20815 0.82416 0.89389 0.84821 1.90488 1.56869 1.17435 1.86023 1.41939 1.64409 1.09636 1.05023 1.19683 1.49397 0.91708 0.85650 0.90224 1.26074 0.96297 0.97867 1.01127 1.69676 1.50152 1.11629 1.24663 0.84906 0.78688 0.77678 0.76922 1.19350 1.19627 1.19868 0.92998 0.89836 0.91163 0.87183 0.88814 0.85881 0.84115 0.88431 0.88845 0.89483 0.89181 0.88482 0.92988 0.93405 0.93035 0.82498 0.88846 0.90853 0.77017 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.31 71.98 0.67 -0.89 16 2 C -0.10 -1.56 3.07 -9.40 -0.03 -1.59 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.11 1.32 6.16 86.86 0.53 1.86 16 5 N -0.62 -13.95 3.33 -811.79 -2.70 -16.65 16 6 C 0.52 13.30 7.78 87.66 0.68 13.98 16 7 O -0.59 -21.83 15.94 3.26 0.05 -21.78 16 8 C -0.12 -1.75 4.33 29.85 0.13 -1.63 16 9 C 0.08 1.42 2.74 31.10 0.09 1.51 16 10 H 0.05 1.15 7.91 -2.38 -0.02 1.13 16 11 C -0.14 -1.31 6.63 31.61 0.21 -1.10 16 12 C -0.15 -1.40 7.09 31.61 0.22 -1.18 16 13 C 0.03 0.51 7.63 72.48 0.55 1.06 16 14 O -0.40 -9.49 10.92 -142.69 -1.56 -11.05 16 15 C 0.11 3.18 6.55 86.73 0.57 3.75 16 16 C 0.08 1.91 2.71 46.10 0.12 2.03 16 17 H 0.08 1.55 7.80 -2.39 -0.02 1.53 16 18 N -0.67 -20.91 5.92 -489.45 -2.90 -23.80 16 19 C 0.06 2.26 6.02 85.56 0.52 2.77 16 20 C 0.44 21.20 7.82 87.66 0.69 21.89 16 21 O -0.62 -34.79 15.78 -3.07 -0.05 -34.84 16 22 N -0.57 -30.02 5.29 -306.97 -1.62 -31.64 16 23 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 25 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 26 N -0.92 -50.50 13.05 21.67 0.28 -50.21 16 27 Si 0.99 43.59 29.55 68.60 2.03 45.61 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 34 H 0.11 0.71 7.48 -2.39 -0.02 0.70 16 35 H 0.09 0.83 7.99 -2.38 -0.02 0.81 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.14 1.02 7.85 -2.38 -0.02 1.01 16 38 H 0.10 0.53 7.87 -2.39 -0.02 0.51 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.05 1.66 8.03 -2.39 -0.02 1.65 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.35 11.05 8.20 -89.70 -0.74 10.31 16 47 H 0.09 3.16 8.13 -2.38 -0.02 3.14 16 48 H 0.07 2.17 8.08 -2.39 -0.02 2.16 16 49 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -81.99 406.30 -0.75 -82.74 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.52 Total: 37.98 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.23 Total: 23.63 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -6.94 Total: -122.30 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -1.55 Total: -67.67 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -81.99 -0.75 -82.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214193044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.146 kcal (2) G-P(sol) polarization free energy of solvation -81.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds