Wall clock time and date at job start Tue Mar 31 2020 23:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34773 * 125.64725 * 178.90523 * 5 4 2 7 7 O 1.21272 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00080 * 0.02562 * 6 5 4 9 9 O 1.42890 * 109.47232 * 180.02562 * 8 6 5 10 10 C 1.42905 * 114.00008 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46966 * 179.97438 * 10 9 8 12 12 C 1.52998 * 117.49691 * 243.62172 * 11 10 9 13 13 C 1.52999 * 117.49514 * 175.00016 * 11 10 9 14 14 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 15 15 C 1.54904 * 104.83620 * 24.13268 * 14 5 4 16 16 H 1.08999 * 111.00765 * 81.06058 * 15 14 5 17 17 N 1.46903 * 111.00889 * 204.91667 * 15 14 5 18 18 C 1.46906 * 110.99493 * 267.19625 * 17 15 14 19 19 C 1.50707 * 109.46714 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99886 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99579 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99357 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00460 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99571 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99912 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47001 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46893 * 120.00111 * 26 24 22 29 29 H 1.48503 * 109.47047 * 240.00151 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 35 35 H 1.08999 * 109.47316 * 300.00643 * 8 6 5 36 36 H 1.09001 * 109.47135 * 59.99976 * 8 6 5 37 37 H 1.09000 * 109.47581 * 299.99971 * 10 9 8 38 38 H 1.09001 * 109.47128 * 60.00400 * 10 9 8 39 39 H 1.09000 * 115.54693 * 29.33711 * 11 10 9 40 40 H 1.08998 * 117.50293 * 0.02562 * 12 11 10 41 41 H 1.09000 * 117.49528 * 145.02584 * 12 11 10 42 42 H 1.09001 * 117.50111 * 214.98258 * 13 11 10 43 43 H 1.09004 * 117.50287 * 0.02562 * 13 11 10 44 44 H 1.09007 * 110.36440 * 142.96663 * 14 5 4 45 45 H 1.08996 * 110.37385 * 265.17849 * 14 5 4 46 46 H 1.00905 * 110.99839 * 31.14116 * 17 15 14 47 47 H 1.09003 * 109.46794 * 299.99011 * 18 17 15 48 48 H 1.08996 * 109.47360 * 59.99813 * 18 17 15 49 49 H 0.96997 * 120.00156 * 359.97438 * 21 19 18 50 50 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9916 -2.3821 -1.4932 7 8 4.9371 -2.9601 -1.0006 8 6 3.6519 -2.5949 -2.9459 9 8 4.5818 -3.5139 -3.5228 10 6 4.3472 -3.7868 -4.9058 11 6 5.3968 -4.7766 -5.4155 12 6 6.3555 -4.2911 -6.5046 13 6 5.2476 -5.2884 -6.8496 14 6 3.4633 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4452 -1.6559 1.4348 17 7 2.2218 0.0681 2.3909 18 6 2.1559 -0.7162 3.6312 19 6 2.3063 0.2034 4.8157 20 8 2.4544 1.3949 4.6434 21 7 2.2763 -0.2982 6.0662 22 6 2.4137 0.5385 7.1437 23 1 2.5464 1.5992 6.9903 24 6 2.3823 0.0215 8.4331 25 7 2.2204 -1.2693 8.6197 26 14 2.5702 1.1612 9.9011 27 1 2.7373 2.5579 9.4253 28 1 1.3590 1.0714 10.7557 29 1 3.7632 0.7602 10.6895 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3716 -0.0992 -1.9989 35 1 2.6432 -2.9998 -3.0277 36 1 3.7054 -1.6433 -3.4748 37 1 3.3528 -4.2162 -5.0279 38 1 4.4153 -2.8601 -5.4757 39 1 5.7890 -5.4703 -4.6718 40 1 6.2388 -3.2666 -6.8577 41 1 7.3789 -4.6654 -6.4775 42 1 5.5421 -6.3186 -7.0496 43 1 4.4019 -4.9197 -7.4302 44 1 3.7960 -2.1446 1.2135 45 1 4.1946 -0.4504 0.7979 46 1 3.0767 0.6022 2.3458 47 1 1.1946 -1.2271 3.6873 48 1 2.9597 -1.4523 3.6388 49 1 2.1575 -1.2509 6.2040 50 1 2.1988 -1.6302 9.5199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214206956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:05 Heat of formation + Delta-G solvation = -85.739128 kcal Electronic energy + Delta-G solvation = -28662.171633 eV Core-core repulsion = 24497.377014 eV Total energy + Delta-G solvation = -4164.794619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48269 -39.00408 -38.34446 -37.80370 -36.68136 -34.79900 -33.81893 -32.64596 -31.23168 -30.16490 -28.51706 -26.87741 -26.54387 -25.65218 -24.00658 -22.84674 -22.32615 -21.22180 -20.64823 -19.67241 -19.22559 -17.91209 -17.72449 -17.02236 -16.93886 -16.30214 -16.14782 -15.76441 -15.34644 -15.00541 -14.78041 -14.53245 -14.40519 -14.26449 -13.80445 -13.63113 -13.44897 -13.27733 -13.23118 -12.78608 -12.71579 -12.36435 -12.23501 -12.16873 -12.00246 -11.68864 -11.56572 -11.53532 -11.30206 -11.13085 -11.04832 -10.92799 -10.85233 -10.74880 -10.34565 -10.23049 -10.01477 -9.97829 -9.52858 -8.93337 -8.50070 -8.13881 -7.97169 -6.42399 -3.83327 2.31107 2.36144 3.16248 3.19690 3.27044 3.34159 3.48990 3.88823 3.97652 4.13052 4.23454 4.33931 4.37165 4.40676 4.57865 4.62447 4.65825 4.68276 4.79095 4.82671 4.97147 4.98717 5.05039 5.14133 5.14341 5.17005 5.21794 5.25218 5.35959 5.42443 5.53565 5.58953 5.63326 5.66903 5.72835 5.74378 5.81407 5.91062 5.95824 6.07093 6.17485 6.25724 6.64204 7.11038 7.21419 7.52931 7.54911 7.92270 8.05329 8.59812 9.17027 9.53123 10.04006 10.75275 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.001642 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.561711 B =17050.700354 C =17859.304091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.093 0.907 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.528 3.472 7 O -0.517 6.517 8 C 0.051 3.949 9 O -0.361 6.361 10 C 0.092 3.908 11 C -0.154 4.154 12 C -0.177 4.177 13 C -0.173 4.173 14 C 0.077 3.923 15 C 0.081 3.919 16 H 0.094 0.906 17 N -0.649 5.649 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.353 0.647 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -5.937 -29.678 30.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.024 4.024 5 N -0.352 5.352 6 C 0.315 3.685 7 O -0.392 6.392 8 C -0.029 4.029 9 O -0.279 6.279 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.214 4.214 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.031 4.031 16 H 0.112 0.888 17 N -0.281 5.281 18 C -0.085 4.085 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.174 0.826 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.226 0.774 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.011 -5.517 -29.257 29.790 hybrid contribution 0.637 -0.449 0.699 1.046 sum -0.375 -5.966 -28.558 29.177 Atomic orbital electron populations 1.21690 0.93238 1.01940 1.02553 1.22203 0.96931 0.99820 0.92140 0.88850 1.22296 0.87381 0.94783 0.97943 1.48285 1.30605 1.44870 1.11488 1.19876 0.82411 0.78728 0.87489 1.90757 1.27992 1.47126 1.73317 1.22130 0.93971 0.94778 0.91988 1.88012 1.52579 1.63451 1.23844 1.22080 0.97415 0.97131 0.81806 1.22118 1.00862 1.01932 0.92337 1.23081 0.95998 0.99603 1.02691 1.22984 1.01288 0.99847 0.96877 1.23161 0.99124 1.01736 0.80667 1.22906 0.94112 0.95323 0.90765 0.88758 1.60151 1.44647 1.24044 0.99242 1.21764 1.01756 0.95147 0.89787 1.19759 0.84708 0.89023 0.83942 1.90527 1.54990 1.15982 1.85293 1.41867 1.63272 1.10481 1.04289 1.19758 1.46556 0.92886 0.83722 0.87830 1.25270 0.97279 0.96356 0.99016 1.69624 1.49996 1.11444 1.23134 0.85799 0.77762 0.80173 0.80603 1.19199 1.20744 1.20764 0.92795 0.92698 0.90893 0.91068 0.91186 0.90217 0.90272 0.92585 0.92932 0.86573 0.88635 0.88476 0.88285 0.88635 0.90196 0.90960 0.82620 0.89400 0.93575 0.77438 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.13 37.16 0.34 -0.77 16 2 C -0.09 -0.82 3.24 -88.78 -0.29 -1.10 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.10 0.74 6.08 -3.06 -0.02 0.72 16 5 N -0.62 -6.59 3.33 -170.53 -0.57 -7.16 16 6 C 0.53 6.63 7.93 -10.99 -0.09 6.55 16 7 O -0.52 -9.03 16.75 -14.35 -0.24 -9.27 16 8 C 0.05 0.45 5.61 36.01 0.20 0.65 16 9 O -0.36 -4.00 9.88 -55.14 -0.54 -4.54 16 10 C 0.09 0.68 6.22 37.16 0.23 0.91 16 11 C -0.15 -1.14 6.06 -90.62 -0.55 -1.69 16 12 C -0.18 -1.08 10.18 -26.73 -0.27 -1.35 16 13 C -0.17 -0.91 10.25 -26.73 -0.27 -1.19 16 14 C 0.08 0.92 6.50 -2.53 -0.02 0.91 16 15 C 0.08 0.91 2.83 -65.56 -0.19 0.72 16 16 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 17 N -0.65 -9.59 6.04 -105.72 -0.64 -10.23 16 18 C 0.05 0.81 6.03 -4.97 -0.03 0.78 16 19 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 20 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 21 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 22 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 25 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.05 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.41 7.82 -51.93 -0.41 0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 45 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 46 H 0.35 5.48 7.89 -39.29 -0.31 5.17 16 47 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 416.45 15.07 6.28 6.28 Total: -1.00 -34.67 416.45 -9.77 -44.44 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.51 Total: 10.63 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -1.27 Total: 7.24 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.54 Total: -55.35 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.70 Total: -29.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.67 -9.77 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214206956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.301 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds