Wall clock time and date at job start Tue Mar 31 2020 23:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34773 * 125.64725 * 178.90523 * 5 4 2 7 7 O 1.21272 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00080 * 0.02562 * 6 5 4 9 9 O 1.42890 * 109.47232 * 180.02562 * 8 6 5 10 10 C 1.42905 * 114.00008 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46966 * 179.97438 * 10 9 8 12 12 C 1.52998 * 117.49691 * 243.62172 * 11 10 9 13 13 C 1.52999 * 117.49514 * 175.00016 * 11 10 9 14 14 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 15 15 C 1.54904 * 104.83620 * 24.13268 * 14 5 4 16 16 H 1.08999 * 111.00765 * 81.06058 * 15 14 5 17 17 N 1.46903 * 111.00889 * 204.91667 * 15 14 5 18 18 C 1.46906 * 110.99493 * 267.19625 * 17 15 14 19 19 C 1.50707 * 109.46714 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99886 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99579 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99357 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00460 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99571 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99912 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47001 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46893 * 120.00111 * 26 24 22 29 29 H 1.48503 * 109.47047 * 240.00151 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 35 35 H 1.08999 * 109.47316 * 300.00643 * 8 6 5 36 36 H 1.09001 * 109.47135 * 59.99976 * 8 6 5 37 37 H 1.09000 * 109.47581 * 299.99971 * 10 9 8 38 38 H 1.09001 * 109.47128 * 60.00400 * 10 9 8 39 39 H 1.09000 * 115.54693 * 29.33711 * 11 10 9 40 40 H 1.08998 * 117.50293 * 0.02562 * 12 11 10 41 41 H 1.09000 * 117.49528 * 145.02584 * 12 11 10 42 42 H 1.09001 * 117.50111 * 214.98258 * 13 11 10 43 43 H 1.09004 * 117.50287 * 0.02562 * 13 11 10 44 44 H 1.09007 * 110.36440 * 142.96663 * 14 5 4 45 45 H 1.08996 * 110.37385 * 265.17849 * 14 5 4 46 46 H 1.00905 * 110.99839 * 31.14116 * 17 15 14 47 47 H 1.09003 * 109.46794 * 299.99011 * 18 17 15 48 48 H 1.08996 * 109.47360 * 59.99813 * 18 17 15 49 49 H 0.96997 * 120.00156 * 359.97438 * 21 19 18 50 50 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9916 -2.3821 -1.4932 7 8 4.9371 -2.9601 -1.0006 8 6 3.6519 -2.5949 -2.9459 9 8 4.5818 -3.5139 -3.5228 10 6 4.3472 -3.7868 -4.9058 11 6 5.3968 -4.7766 -5.4155 12 6 6.3555 -4.2911 -6.5046 13 6 5.2476 -5.2884 -6.8496 14 6 3.4633 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4452 -1.6559 1.4348 17 7 2.2218 0.0681 2.3909 18 6 2.1559 -0.7162 3.6312 19 6 2.3063 0.2034 4.8157 20 8 2.4544 1.3949 4.6434 21 7 2.2763 -0.2982 6.0662 22 6 2.4137 0.5385 7.1437 23 1 2.5464 1.5992 6.9903 24 6 2.3823 0.0215 8.4331 25 7 2.2204 -1.2693 8.6197 26 14 2.5702 1.1612 9.9011 27 1 2.7373 2.5579 9.4253 28 1 1.3590 1.0714 10.7557 29 1 3.7632 0.7602 10.6895 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3716 -0.0992 -1.9989 35 1 2.6432 -2.9998 -3.0277 36 1 3.7054 -1.6433 -3.4748 37 1 3.3528 -4.2162 -5.0279 38 1 4.4153 -2.8601 -5.4757 39 1 5.7890 -5.4703 -4.6718 40 1 6.2388 -3.2666 -6.8577 41 1 7.3789 -4.6654 -6.4775 42 1 5.5421 -6.3186 -7.0496 43 1 4.4019 -4.9197 -7.4302 44 1 3.7960 -2.1446 1.2135 45 1 4.1946 -0.4504 0.7979 46 1 3.0767 0.6022 2.3458 47 1 1.1946 -1.2271 3.6873 48 1 2.9597 -1.4523 3.6388 49 1 2.1575 -1.2509 6.2040 50 1 2.1988 -1.6302 9.5199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214206956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:04 Heat of formation + Delta-G solvation = -110.596501 kcal Electronic energy + Delta-G solvation = -28663.249529 eV Core-core repulsion = 24497.377014 eV Total energy + Delta-G solvation = -4165.872515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37492 -40.20544 -39.53251 -38.79332 -37.30124 -36.23053 -35.57788 -33.54395 -33.23239 -31.04765 -29.43475 -27.90096 -27.34723 -26.75955 -25.58175 -23.28827 -23.23350 -21.75676 -21.58908 -20.97680 -20.44992 -19.91029 -18.48290 -17.94250 -17.83020 -17.41118 -17.02281 -16.76633 -16.66759 -16.35629 -15.91718 -15.69216 -15.54237 -15.33539 -14.98556 -14.80342 -14.37458 -14.22282 -14.16154 -13.80560 -13.60626 -13.48566 -13.41166 -13.27785 -13.08153 -12.94976 -12.84027 -12.41050 -12.39566 -12.12018 -12.10481 -12.08223 -11.87729 -11.65399 -11.51833 -11.39785 -11.28095 -10.95310 -10.52739 -10.35024 -10.02247 -9.81823 -9.37845 -8.47367 -5.96193 1.36366 1.41768 1.45962 1.53832 1.56311 2.04138 2.28526 2.62584 2.86502 2.99653 3.19911 3.32318 3.48246 3.60410 3.74228 3.89566 3.92331 3.95661 4.11022 4.15277 4.17477 4.20899 4.27529 4.32103 4.34011 4.42093 4.50279 4.52579 4.57540 4.68787 4.69563 4.74482 4.77324 4.80591 4.93516 5.00738 5.04556 5.17772 5.21357 5.24064 5.35215 5.40901 5.52621 5.86808 6.06089 6.07472 6.28950 6.40474 6.58783 7.02676 7.11848 7.55260 8.10018 8.70197 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.001642 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.561711 B =17050.700354 C =17859.304091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 H 0.087 0.913 4 C 0.100 3.900 5 N -0.612 5.612 6 C 0.519 3.481 7 O -0.582 6.582 8 C 0.056 3.944 9 O -0.401 6.401 10 C 0.091 3.909 11 C -0.178 4.178 12 C -0.182 4.182 13 C -0.156 4.156 14 C 0.078 3.922 15 C 0.085 3.915 16 H 0.102 0.898 17 N -0.656 5.656 18 C 0.063 3.937 19 C 0.438 3.562 20 O -0.621 6.621 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.347 0.653 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -5.927 -31.969 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 H 0.105 0.895 4 C -0.022 4.022 5 N -0.346 5.346 6 C 0.308 3.692 7 O -0.461 6.461 8 C -0.023 4.023 9 O -0.320 6.320 10 C 0.015 3.985 11 C -0.197 4.197 12 C -0.219 4.219 13 C -0.193 4.193 14 C -0.048 4.048 15 C -0.026 4.026 16 H 0.120 0.880 17 N -0.287 5.287 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.166 0.834 47 H 0.127 0.873 48 H 0.079 0.921 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.747 -5.511 -31.581 32.176 hybrid contribution 1.168 -0.444 1.358 1.846 sum -1.579 -5.955 -30.223 30.845 Atomic orbital electron populations 1.21654 0.92206 1.02492 1.02609 1.22181 0.97650 0.99335 0.91383 0.89502 1.22534 0.86656 0.95363 0.97600 1.48360 1.31137 1.44449 1.10702 1.20740 0.81489 0.77812 0.89139 1.90724 1.30845 1.49743 1.74789 1.22262 0.94806 0.96193 0.89051 1.87972 1.53922 1.64261 1.25838 1.22247 0.98062 0.97900 0.80243 1.22154 1.02101 1.02537 0.92893 1.23168 0.96082 1.00442 1.02186 1.23072 1.01197 0.99972 0.95032 1.23017 0.99322 1.00480 0.81933 1.22962 0.93869 0.95550 0.90222 0.88023 1.60200 1.44366 1.24612 0.99560 1.21618 1.03355 0.93947 0.88029 1.20820 0.82375 0.89377 0.84831 1.90494 1.56116 1.18133 1.86038 1.41943 1.64060 1.10381 1.04672 1.19720 1.48811 0.92411 0.85385 0.90204 1.26047 0.96320 0.97886 1.01017 1.69685 1.49864 1.12518 1.24093 0.84866 0.78272 0.77913 0.77254 1.19690 1.19549 1.19752 0.91817 0.90381 0.93293 0.88177 0.88465 0.86977 0.87171 0.90825 0.91197 0.88914 0.87752 0.88789 0.87818 0.86923 0.92304 0.91837 0.83365 0.87334 0.92064 0.77022 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.13 71.98 0.66 -1.09 16 2 C -0.09 -1.32 3.24 -9.60 -0.03 -1.35 16 3 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 4 C 0.10 1.11 6.08 86.73 0.53 1.64 16 5 N -0.61 -12.10 3.33 -811.81 -2.70 -14.80 16 6 C 0.52 12.59 7.93 87.66 0.69 13.28 16 7 O -0.58 -21.05 16.75 16.03 0.27 -20.78 16 8 C 0.06 0.83 5.61 71.24 0.40 1.22 16 9 O -0.40 -8.46 9.88 -129.94 -1.28 -9.74 16 10 C 0.09 1.16 6.22 71.98 0.45 1.60 16 11 C -0.18 -2.52 6.06 -10.79 -0.07 -2.58 16 12 C -0.18 -2.03 10.18 30.59 0.31 -1.72 16 13 C -0.16 -1.37 10.25 30.59 0.31 -1.06 16 14 C 0.08 1.84 6.50 86.85 0.56 2.41 16 15 C 0.09 1.81 2.83 46.31 0.13 1.94 16 16 H 0.10 2.05 7.72 -2.39 -0.02 2.03 16 17 N -0.66 -19.21 6.04 -488.37 -2.95 -22.16 16 18 C 0.06 2.10 6.03 85.56 0.52 2.61 16 19 C 0.44 20.67 7.82 87.66 0.69 21.36 16 20 O -0.62 -34.02 15.78 -3.06 -0.05 -34.06 16 21 N -0.57 -29.49 5.29 -306.98 -1.62 -31.12 16 22 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 26 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.63 7.82 -2.39 -0.02 0.61 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.61 7.87 -2.39 -0.02 0.60 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 1.63 8.04 -2.38 -0.02 1.61 16 45 H 0.06 1.60 7.75 -2.39 -0.02 1.59 16 46 H 0.35 10.95 7.89 -89.69 -0.71 10.24 16 47 H 0.11 3.21 8.09 -2.39 -0.02 3.19 16 48 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 50 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -79.35 416.45 -0.09 -79.43 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.49 Total: 37.98 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 6.43 Total: 19.80 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -6.99 Total: -117.84 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -1.06 Total: -64.58 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.35 -0.09 -79.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214206956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.162 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds