Wall clock time and date at job start Tue Mar 31 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.65844 * 2 1 4 4 C 1.54598 * 110.98413 * 236.84129 * 2 1 3 5 5 N 1.48122 * 103.42047 * 204.37316 * 4 2 1 6 6 C 1.34777 * 127.03502 * 219.28489 * 5 4 2 7 7 O 1.21283 * 119.99750 * 179.68542 * 6 5 4 8 8 C 1.50702 * 119.99928 * 359.96635 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 5 10 10 H 1.09004 * 110.45661 * 54.29246 * 9 8 6 11 11 C 1.54503 * 110.51365 * 176.90500 * 9 8 6 12 12 C 1.54475 * 104.06704 * 118.64091 * 11 9 8 13 13 O 1.44425 * 104.80067 * 23.98238 * 12 11 9 14 14 C 1.44649 * 105.36889 * 319.56337 * 13 12 11 15 15 C 1.47487 * 105.92931 * 39.02856 * 5 4 2 16 16 C 1.54002 * 107.08545 * 334.77652 * 15 5 4 17 17 H 1.09001 * 110.32996 * 120.19805 * 16 15 5 18 18 N 1.46895 * 110.32718 * 242.31529 * 16 15 5 19 19 C 1.46905 * 111.00071 * 273.54268 * 18 16 15 20 20 C 1.50693 * 109.47449 * 179.97438 * 19 18 16 21 21 O 1.21298 * 120.00259 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.37099 * 120.00173 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99594 * 0.02562 * 23 22 20 25 25 C 1.38946 * 120.00265 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00300 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99903 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47135 * 90.00087 * 27 25 23 29 29 H 1.48495 * 109.47159 * 209.99903 * 27 25 23 30 30 H 1.48503 * 109.46945 * 330.00145 * 27 25 23 31 31 H 1.08996 * 109.47286 * 296.81187 * 1 2 3 32 32 H 1.09005 * 109.47101 * 56.80680 * 1 2 3 33 33 H 1.09002 * 109.47344 * 176.80929 * 1 2 3 34 34 H 1.09004 * 110.61909 * 85.86429 * 4 2 1 35 35 H 1.09002 * 110.54980 * 322.85560 * 4 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 38 38 H 1.09004 * 110.51103 * 237.29255 * 11 9 8 39 39 H 1.09007 * 110.50914 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.37440 * 142.80993 * 12 11 9 41 41 H 1.08995 * 110.37772 * 265.14853 * 12 11 9 42 42 H 1.09002 * 110.33649 * 281.59253 * 14 13 12 43 43 H 1.08997 * 110.50794 * 159.19019 * 14 13 12 44 44 H 1.09001 * 109.91358 * 94.14097 * 15 5 4 45 45 H 1.08998 * 109.90865 * 215.22143 * 15 5 4 46 46 H 1.00902 * 111.00231 * 37.49891 * 18 16 15 47 47 H 1.09000 * 109.47247 * 300.00235 * 19 18 16 48 48 H 1.09006 * 109.46499 * 59.99680 * 19 18 16 49 49 H 0.97000 * 120.00034 * 0.02562 * 22 20 19 50 50 H 0.97001 * 119.99720 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0836 -0.7895 -1.2084 5 7 3.4321 -1.2058 -0.7585 6 6 4.5592 -1.2407 -1.4965 7 8 5.6026 -1.6002 -0.9934 8 6 4.5244 -0.8271 -2.9453 9 6 5.9263 -0.9523 -3.5452 10 1 6.3191 -1.9570 -3.3890 11 6 5.9034 -0.6079 -5.0512 12 6 6.8392 0.6153 -5.1709 13 8 7.7173 0.5212 -4.0281 14 6 6.8743 0.1011 -2.9303 15 6 3.2902 -1.5682 0.6641 16 6 2.0775 -0.7917 1.2101 17 1 1.3220 -1.4830 1.5834 18 7 2.4979 0.1277 2.2758 19 6 2.5186 -0.5509 3.5786 20 6 2.9541 0.4212 4.6445 21 8 3.2207 1.5669 4.3483 22 7 3.0465 0.0180 5.9272 23 6 3.4423 0.9025 6.8971 24 1 3.6796 1.9226 6.6332 25 6 3.5381 0.4867 8.2194 26 7 3.9179 1.3344 9.1490 27 14 3.1269 -1.2774 8.6758 28 1 4.3526 -2.1108 8.5851 29 1 2.6012 -1.3199 10.0640 30 1 2.1000 -1.8040 7.7412 31 1 -0.3634 0.4635 0.9171 32 1 -0.3633 0.5626 -0.8600 33 1 -0.3634 -1.0261 -0.0572 34 1 2.1524 -0.1481 -2.0871 35 1 1.4610 -1.6602 -1.4143 36 1 3.8366 -1.4729 -3.4911 37 1 4.1883 0.2070 -3.0198 38 1 6.2871 -1.4415 -5.6395 39 1 4.8932 -0.3488 -5.3684 40 1 7.4136 0.5646 -6.0959 41 1 6.2628 1.5395 -5.1314 42 1 6.3038 0.9465 -2.5458 43 1 7.4741 -0.3452 -2.1372 44 1 3.1177 -2.6403 0.7587 45 1 4.1908 -1.2876 1.2102 46 1 3.3963 0.5368 2.0669 47 1 1.5204 -0.9221 3.8108 48 1 3.2175 -1.3866 3.5419 49 1 2.8330 -0.8981 6.1643 50 1 3.9844 1.0441 10.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214372937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:35 Heat of formation + Delta-G solvation = -110.361595 kcal Electronic energy + Delta-G solvation = -29682.899317 eV Core-core repulsion = 25517.036988 eV Total energy + Delta-G solvation = -4165.862329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69809 -39.62576 -38.57083 -37.93060 -34.82485 -33.92423 -33.79696 -32.71736 -31.66592 -30.35542 -29.25475 -27.46937 -26.62590 -25.96707 -24.02946 -23.24087 -22.42897 -20.98527 -20.46934 -19.57065 -19.34348 -18.33485 -17.53590 -16.78094 -16.55233 -16.20836 -15.91729 -15.76813 -15.34422 -15.26740 -14.84869 -14.76345 -14.31973 -14.18304 -13.82791 -13.66514 -13.26359 -13.19616 -12.98554 -12.75748 -12.66241 -12.58721 -12.42876 -12.25656 -12.05713 -11.98949 -11.76688 -11.61155 -11.35191 -11.24604 -11.18373 -11.16337 -11.02201 -10.91038 -10.60323 -10.07633 -10.06052 -9.98118 -9.58308 -9.11395 -8.59977 -8.21736 -8.16418 -6.31614 -3.83181 2.35535 2.60647 3.01739 3.06379 3.14630 3.67074 3.72078 3.91713 4.00349 4.09782 4.22156 4.27436 4.35246 4.45907 4.61204 4.68074 4.71765 4.87163 4.91175 4.93663 4.94416 5.03571 5.06970 5.15489 5.20876 5.22016 5.28247 5.32739 5.40486 5.44645 5.47010 5.53799 5.55974 5.58101 5.70967 5.73541 5.80096 5.84416 5.87399 5.90918 6.00312 6.12230 6.49736 7.01461 7.23415 7.45623 7.57103 7.88269 8.13523 8.58598 8.94148 9.41426 9.81107 10.81430 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.002183 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.456504 B =12821.458310 C =13790.380625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.093 0.907 4 C 0.101 3.899 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.536 6.536 8 C -0.128 4.128 9 C -0.107 4.107 10 H 0.092 0.908 11 C -0.152 4.152 12 C 0.043 3.957 13 O -0.378 6.378 14 C 0.054 3.946 15 C 0.073 3.927 16 C 0.079 3.921 17 H 0.095 0.905 18 N -0.655 5.655 19 C 0.045 3.955 20 C 0.449 3.551 21 O -0.565 6.565 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.354 0.646 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -9.161 -29.079 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.111 0.889 4 C -0.023 4.023 5 N -0.354 5.354 6 C 0.317 3.683 7 O -0.413 6.413 8 C -0.167 4.167 9 C -0.126 4.126 10 H 0.111 0.889 11 C -0.190 4.190 12 C -0.034 4.034 13 O -0.296 6.296 14 C -0.023 4.023 15 C -0.051 4.051 16 C -0.033 4.033 17 H 0.113 0.887 18 N -0.287 5.287 19 C -0.087 4.087 20 C 0.235 3.765 21 O -0.446 6.446 22 N -0.229 5.229 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.520 5.520 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.175 0.825 47 H 0.107 0.893 48 H 0.064 0.936 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.980 -8.213 -28.710 30.274 hybrid contribution 0.096 -2.062 0.591 2.147 sum -4.885 -10.275 -28.119 30.333 Atomic orbital electron populations 1.21689 0.93360 1.01719 1.02755 1.22233 0.96501 1.00297 0.92456 0.88862 1.22677 0.82745 0.98753 0.98085 1.48765 1.08605 1.66426 1.11644 1.20347 0.82034 0.77646 0.88260 1.90736 1.29712 1.47637 1.73188 1.21749 0.98860 1.03715 0.92419 1.22310 0.94219 1.01973 0.94066 0.88947 1.23029 1.00864 0.99203 0.95869 1.23404 0.92384 0.97078 0.90562 1.89183 1.32176 1.89205 1.19074 1.23561 0.92957 0.95504 0.90250 1.23000 1.00229 0.99887 0.82028 1.22671 0.95392 0.93220 0.91976 0.88675 1.60198 1.37115 1.31536 0.99864 1.21777 1.01613 0.95471 0.89870 1.19671 0.84545 0.89189 0.83116 1.90574 1.53309 1.19557 1.81201 1.42202 1.61615 1.12078 1.07012 1.19429 1.42014 0.95856 0.86068 0.86277 1.25049 0.97538 0.98136 0.95482 1.69625 1.46287 1.34602 1.01531 0.86666 0.78999 0.84643 0.79043 1.19639 1.20154 1.19486 0.91218 0.92485 0.92726 0.90016 0.90661 0.88514 0.88564 0.90364 0.90260 0.89181 0.92307 0.92444 0.88004 0.91496 0.90269 0.82498 0.89286 0.93610 0.79694 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.10 -0.79 3.36 -88.93 -0.30 -1.09 16 3 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 4 C 0.10 0.66 6.39 -2.31 -0.01 0.64 16 5 N -0.62 -5.99 3.29 -169.97 -0.56 -6.55 16 6 C 0.53 5.71 7.69 -10.98 -0.08 5.63 16 7 O -0.54 -7.96 15.25 5.55 0.08 -7.88 16 8 C -0.13 -0.88 3.85 -27.88 -0.11 -0.99 16 9 C -0.11 -0.87 2.71 -89.06 -0.24 -1.11 16 10 H 0.09 0.87 7.96 -51.93 -0.41 0.45 16 11 C -0.15 -0.90 6.73 -25.17 -0.17 -1.06 16 12 C 0.04 0.31 7.64 37.93 0.29 0.60 16 13 O -0.38 -4.25 11.65 -35.23 -0.41 -4.66 16 14 C 0.05 0.56 6.30 37.93 0.24 0.80 16 15 C 0.07 0.79 6.54 -2.98 -0.02 0.77 16 16 C 0.08 0.81 2.88 -66.34 -0.19 0.62 16 17 H 0.10 0.87 7.57 -51.93 -0.39 0.48 16 18 N -0.66 -9.47 5.85 -106.54 -0.62 -10.10 16 19 C 0.05 0.72 6.00 -4.98 -0.03 0.69 16 20 C 0.45 10.09 7.82 -10.99 -0.09 10.00 16 21 O -0.56 -15.11 15.78 5.54 0.09 -15.03 16 22 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 23 C -0.30 -8.65 10.16 -14.93 -0.15 -8.81 16 24 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 27 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.08 0.38 7.23 -51.93 -0.38 0.01 16 35 H 0.08 0.39 8.02 -51.93 -0.42 -0.02 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.54 7.77 -51.93 -0.40 0.13 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.31 7.73 -51.93 -0.40 -0.09 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 43 H 0.10 1.24 7.71 -51.93 -0.40 0.84 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.05 7.54 -51.93 -0.39 0.66 16 46 H 0.35 5.68 7.93 -39.29 -0.31 5.37 16 47 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 48 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 49 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -35.48 400.13 -8.35 -43.83 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -8.34 Total: 11.69 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.62 Total: 7.10 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.46 Total: -55.75 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.24 Total: -27.57 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.48 -8.35 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214372937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.536 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds