Wall clock time and date at job start Tue Mar 31 2020 23:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.65844 * 2 1 4 4 C 1.54598 * 110.98413 * 236.84129 * 2 1 3 5 5 N 1.48122 * 103.42047 * 204.37316 * 4 2 1 6 6 C 1.34777 * 127.03502 * 219.28489 * 5 4 2 7 7 O 1.21283 * 119.99750 * 179.68542 * 6 5 4 8 8 C 1.50702 * 119.99928 * 359.96635 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 5 10 10 H 1.09004 * 110.45661 * 54.29246 * 9 8 6 11 11 C 1.54503 * 110.51365 * 176.90500 * 9 8 6 12 12 C 1.54475 * 104.06704 * 118.64091 * 11 9 8 13 13 O 1.44425 * 104.80067 * 23.98238 * 12 11 9 14 14 C 1.44649 * 105.36889 * 319.56337 * 13 12 11 15 15 C 1.47487 * 105.92931 * 39.02856 * 5 4 2 16 16 C 1.54002 * 107.08545 * 334.77652 * 15 5 4 17 17 H 1.09001 * 110.32996 * 120.19805 * 16 15 5 18 18 N 1.46895 * 110.32718 * 242.31529 * 16 15 5 19 19 C 1.46905 * 111.00071 * 273.54268 * 18 16 15 20 20 C 1.50693 * 109.47449 * 179.97438 * 19 18 16 21 21 O 1.21298 * 120.00259 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.37099 * 120.00173 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99594 * 0.02562 * 23 22 20 25 25 C 1.38946 * 120.00265 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00300 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99903 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47135 * 90.00087 * 27 25 23 29 29 H 1.48495 * 109.47159 * 209.99903 * 27 25 23 30 30 H 1.48503 * 109.46945 * 330.00145 * 27 25 23 31 31 H 1.08996 * 109.47286 * 296.81187 * 1 2 3 32 32 H 1.09005 * 109.47101 * 56.80680 * 1 2 3 33 33 H 1.09002 * 109.47344 * 176.80929 * 1 2 3 34 34 H 1.09004 * 110.61909 * 85.86429 * 4 2 1 35 35 H 1.09002 * 110.54980 * 322.85560 * 4 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 38 38 H 1.09004 * 110.51103 * 237.29255 * 11 9 8 39 39 H 1.09007 * 110.50914 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.37440 * 142.80993 * 12 11 9 41 41 H 1.08995 * 110.37772 * 265.14853 * 12 11 9 42 42 H 1.09002 * 110.33649 * 281.59253 * 14 13 12 43 43 H 1.08997 * 110.50794 * 159.19019 * 14 13 12 44 44 H 1.09001 * 109.91358 * 94.14097 * 15 5 4 45 45 H 1.08998 * 109.90865 * 215.22143 * 15 5 4 46 46 H 1.00902 * 111.00231 * 37.49891 * 18 16 15 47 47 H 1.09000 * 109.47247 * 300.00235 * 19 18 16 48 48 H 1.09006 * 109.46499 * 59.99680 * 19 18 16 49 49 H 0.97000 * 120.00034 * 0.02562 * 22 20 19 50 50 H 0.97001 * 119.99720 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0836 -0.7895 -1.2084 5 7 3.4321 -1.2058 -0.7585 6 6 4.5592 -1.2407 -1.4965 7 8 5.6026 -1.6002 -0.9934 8 6 4.5244 -0.8271 -2.9453 9 6 5.9263 -0.9523 -3.5452 10 1 6.3191 -1.9570 -3.3890 11 6 5.9034 -0.6079 -5.0512 12 6 6.8392 0.6153 -5.1709 13 8 7.7173 0.5212 -4.0281 14 6 6.8743 0.1011 -2.9303 15 6 3.2902 -1.5682 0.6641 16 6 2.0775 -0.7917 1.2101 17 1 1.3220 -1.4830 1.5834 18 7 2.4979 0.1277 2.2758 19 6 2.5186 -0.5509 3.5786 20 6 2.9541 0.4212 4.6445 21 8 3.2207 1.5669 4.3483 22 7 3.0465 0.0180 5.9272 23 6 3.4423 0.9025 6.8971 24 1 3.6796 1.9226 6.6332 25 6 3.5381 0.4867 8.2194 26 7 3.9179 1.3344 9.1490 27 14 3.1269 -1.2774 8.6758 28 1 4.3526 -2.1108 8.5851 29 1 2.6012 -1.3199 10.0640 30 1 2.1000 -1.8040 7.7412 31 1 -0.3634 0.4635 0.9171 32 1 -0.3633 0.5626 -0.8600 33 1 -0.3634 -1.0261 -0.0572 34 1 2.1524 -0.1481 -2.0871 35 1 1.4610 -1.6602 -1.4143 36 1 3.8366 -1.4729 -3.4911 37 1 4.1883 0.2070 -3.0198 38 1 6.2871 -1.4415 -5.6395 39 1 4.8932 -0.3488 -5.3684 40 1 7.4136 0.5646 -6.0959 41 1 6.2628 1.5395 -5.1314 42 1 6.3038 0.9465 -2.5458 43 1 7.4741 -0.3452 -2.1372 44 1 3.1177 -2.6403 0.7587 45 1 4.1908 -1.2876 1.2102 46 1 3.3963 0.5368 2.0669 47 1 1.5204 -0.9221 3.8108 48 1 3.2175 -1.3866 3.5419 49 1 2.8330 -0.8981 6.1643 50 1 3.9844 1.0441 10.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214372937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:34 Heat of formation + Delta-G solvation = -139.352697 kcal Electronic energy + Delta-G solvation = -29684.156466 eV Core-core repulsion = 25517.036988 eV Total energy + Delta-G solvation = -4167.119477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46217 -40.50231 -40.08291 -38.94344 -36.23779 -35.56534 -34.54496 -33.78059 -33.43882 -31.00222 -30.16312 -28.51791 -27.43139 -26.98629 -25.59333 -23.93410 -23.26031 -21.66170 -21.38810 -21.09963 -20.33004 -20.13959 -18.33053 -17.74826 -17.47692 -17.30046 -16.93671 -16.74596 -16.54017 -16.28335 -16.03644 -15.83143 -15.56506 -15.13895 -14.87539 -14.78734 -14.49971 -14.29965 -14.07488 -13.80045 -13.71269 -13.53483 -13.30307 -13.21673 -13.12168 -12.95623 -12.75507 -12.57215 -12.43476 -12.16690 -12.04664 -11.99616 -11.92665 -11.86783 -11.64280 -11.53963 -11.51993 -10.88987 -10.79767 -10.47058 -10.27520 -9.90862 -9.28076 -8.43307 -6.04581 1.28315 1.34223 1.43176 1.58393 1.89896 1.93580 2.21369 2.68210 3.02674 3.12830 3.26809 3.40615 3.57193 3.64422 3.73139 3.82883 3.98069 4.06547 4.13530 4.17468 4.20967 4.28938 4.37878 4.39866 4.43521 4.50507 4.52784 4.58846 4.68529 4.71939 4.73099 4.83216 4.85210 4.85435 4.90522 4.94744 5.11799 5.17334 5.18851 5.23210 5.37899 5.50367 5.54061 5.83551 5.88951 6.03823 6.23015 6.52406 6.57123 6.85532 7.11237 7.36908 7.93578 8.74336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.002183 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.456504 B =12821.458310 C =13790.380625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 H 0.070 0.930 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.518 3.482 7 O -0.590 6.590 8 C -0.117 4.117 9 C -0.104 4.104 10 H 0.073 0.927 11 C -0.140 4.140 12 C 0.032 3.968 13 O -0.410 6.410 14 C 0.051 3.949 15 C 0.074 3.926 16 C 0.082 3.918 17 H 0.117 0.883 18 N -0.670 5.670 19 C 0.060 3.940 20 C 0.447 3.553 21 O -0.616 6.616 22 N -0.590 5.590 23 C -0.329 4.329 24 H 0.054 0.946 25 C -0.017 4.017 26 N -0.934 5.934 27 Si 0.966 3.034 28 H -0.259 1.259 29 H -0.274 1.274 30 H -0.228 1.228 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.339 0.661 47 H 0.123 0.877 48 H 0.072 0.928 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 -12.525 -31.957 35.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.308 3.692 7 O -0.470 6.470 8 C -0.156 4.156 9 C -0.123 4.123 10 H 0.092 0.908 11 C -0.178 4.178 12 C -0.044 4.044 13 O -0.329 6.329 14 C -0.025 4.025 15 C -0.051 4.051 16 C -0.028 4.028 17 H 0.135 0.865 18 N -0.301 5.301 19 C -0.072 4.072 20 C 0.235 3.765 21 O -0.501 6.501 22 N -0.232 5.232 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.215 4.215 26 N -0.574 5.574 27 Si 0.786 3.214 28 H -0.184 1.184 29 H -0.199 1.199 30 H -0.151 1.151 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.158 0.842 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.226 0.774 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.272 -11.587 -31.634 34.690 hybrid contribution 1.161 -0.849 1.436 2.033 sum -7.111 -12.436 -30.198 33.424 Atomic orbital electron populations 1.21646 0.91886 1.03026 1.02376 1.22214 0.97566 0.99103 0.92397 0.91114 1.22904 0.80934 0.99971 0.97892 1.48900 1.09717 1.65704 1.11117 1.21151 0.81421 0.76786 0.89800 1.90720 1.31718 1.50112 1.74493 1.21793 0.98633 1.05552 0.89617 1.22242 0.94375 0.99946 0.95736 0.90824 1.23009 1.02269 0.98644 0.93839 1.23699 0.92638 0.98439 0.89629 1.89143 1.33933 1.89456 1.20408 1.23486 0.92985 0.96179 0.89878 1.22904 0.98855 1.00583 0.82801 1.22829 0.95436 0.93146 0.91434 0.86463 1.60258 1.36305 1.33031 1.00519 1.21714 1.03668 0.93761 0.88059 1.21022 0.82065 0.89637 0.83815 1.90550 1.54858 1.22504 1.82148 1.42028 1.62143 1.12272 1.06740 1.18998 1.44271 0.94465 0.88142 0.92816 1.26157 0.96402 1.04527 0.94459 1.69811 1.47406 1.37943 1.02289 0.85352 0.80126 0.76609 0.79355 1.18409 1.19866 1.15127 0.93399 0.90909 0.90749 0.87343 0.87930 0.84929 0.86474 0.89668 0.87120 0.87911 0.91135 0.92515 0.91211 0.90233 0.93706 0.84167 0.85940 0.91021 0.77424 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.17 71.98 0.66 -0.71 16 2 C -0.09 -1.29 3.36 -9.70 -0.03 -1.32 16 3 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 4 C 0.10 0.93 6.39 86.61 0.55 1.48 16 5 N -0.62 -10.69 3.29 -810.05 -2.67 -13.35 16 6 C 0.52 10.65 7.69 87.66 0.67 11.33 16 7 O -0.59 -18.24 15.25 -3.04 -0.05 -18.28 16 8 C -0.12 -1.27 3.85 29.85 0.11 -1.15 16 9 C -0.10 -1.57 2.71 -9.78 -0.03 -1.60 16 10 H 0.07 1.39 7.96 -2.38 -0.02 1.37 16 11 C -0.14 -1.25 6.73 31.61 0.21 -1.03 16 12 C 0.03 0.41 7.64 72.48 0.55 0.97 16 13 O -0.41 -9.44 11.65 -148.98 -1.74 -11.17 16 14 C 0.05 1.13 6.30 72.49 0.46 1.59 16 15 C 0.07 1.48 6.54 86.53 0.57 2.05 16 16 C 0.08 1.49 2.88 45.81 0.13 1.63 16 17 H 0.12 1.65 7.57 -2.39 -0.02 1.63 16 18 N -0.67 -18.94 5.85 -490.98 -2.87 -21.82 16 19 C 0.06 1.79 6.00 85.55 0.51 2.31 16 20 C 0.45 20.36 7.82 87.65 0.69 21.05 16 21 O -0.62 -34.79 15.78 -3.08 -0.05 -34.84 16 22 N -0.59 -28.14 5.09 -306.98 -1.56 -29.70 16 23 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 24 H 0.05 3.82 7.39 -2.91 -0.02 3.79 16 25 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 26 N -0.93 -57.04 13.96 21.66 0.30 -56.74 16 27 Si 0.97 39.12 27.74 68.60 1.90 41.02 16 28 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.50 8.11 -2.39 -0.02 0.48 16 34 H 0.11 0.44 7.23 -2.38 -0.02 0.42 16 35 H 0.10 0.46 8.02 -2.39 -0.02 0.44 16 36 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.12 0.84 7.77 -2.39 -0.02 0.82 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.32 7.73 -2.38 -0.02 0.31 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 43 H 0.07 1.92 7.71 -2.39 -0.02 1.90 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.04 1.22 7.54 -2.39 -0.02 1.20 16 46 H 0.34 11.28 7.93 -89.69 -0.71 10.57 16 47 H 0.12 2.90 8.08 -2.39 -0.02 2.88 16 48 H 0.07 1.82 8.11 -2.38 -0.02 1.80 16 49 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 50 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -88.32 400.13 -0.70 -89.03 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.35 Total: 38.54 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.38 Total: 17.32 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -6.80 Total: -121.61 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.83 Total: -64.30 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -88.32 -0.70 -89.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214372937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.327 kcal (2) G-P(sol) polarization free energy of solvation -88.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds