Wall clock time and date at job start Tue Mar 31 2020 23:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.30122 * 2 1 4 4 C 1.54391 * 110.43261 * 237.77266 * 2 1 3 5 5 N 1.48150 * 104.61300 * 264.94538 * 4 2 1 6 6 C 1.34776 * 127.83335 * 140.41116 * 5 4 2 7 7 O 1.21277 * 119.99915 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00321 * 0.02562 * 6 5 4 9 9 C 1.53005 * 109.47334 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.84770 * 53.80056 * 9 8 6 11 11 C 1.53783 * 113.60999 * 282.49678 * 9 8 6 12 12 C 1.53785 * 87.07933 * 220.01672 * 11 9 8 13 13 C 1.53780 * 113.61368 * 185.00267 * 9 8 6 14 14 C 1.48415 * 104.33809 * 320.38760 * 5 4 2 15 15 C 1.54281 * 110.34526 * 122.17851 * 2 1 3 16 16 H 1.09002 * 110.34289 * 0.10705 * 15 2 1 17 17 N 1.46900 * 110.34075 * 237.95482 * 15 2 1 18 18 C 1.46907 * 110.99543 * 156.47597 * 17 15 2 19 19 C 1.50706 * 109.46837 * 180.02562 * 18 17 15 20 20 O 1.21299 * 119.99980 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99945 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99999 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00082 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00095 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00188 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46953 * 59.99837 * 26 24 22 28 28 H 1.48503 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46942 * 300.00022 * 26 24 22 30 30 H 1.08995 * 109.46915 * 297.81931 * 1 2 3 31 31 H 1.09000 * 109.47292 * 57.82212 * 1 2 3 32 32 H 1.09001 * 109.46306 * 177.82024 * 1 2 3 33 33 H 1.08999 * 110.40947 * 23.73299 * 4 2 1 34 34 H 1.09001 * 110.40613 * 146.16376 * 4 2 1 35 35 H 1.09004 * 109.47416 * 300.00075 * 8 6 5 36 36 H 1.09002 * 109.47124 * 59.99937 * 8 6 5 37 37 H 0.96698 * 114.00331 * 309.66342 * 10 9 8 38 38 H 1.08999 * 113.61731 * 334.56417 * 11 9 8 39 39 H 1.08996 * 113.61426 * 105.46842 * 11 9 8 40 40 H 1.08988 * 113.61355 * 270.88565 * 12 11 9 41 41 H 1.09002 * 113.61048 * 139.97599 * 12 11 9 42 42 H 1.09007 * 113.60744 * 254.52929 * 13 9 8 43 43 H 1.08994 * 113.61623 * 25.34177 * 13 9 8 44 44 H 1.08997 * 110.44874 * 280.87091 * 14 5 4 45 45 H 1.09004 * 110.48780 * 158.35620 * 14 5 4 46 46 H 1.00902 * 110.99791 * 280.42280 * 17 15 2 47 47 H 1.09002 * 109.46797 * 299.99569 * 18 17 15 48 48 H 1.08995 * 109.47198 * 60.00074 * 18 17 15 49 49 H 0.97000 * 119.99820 * 359.97438 * 21 19 18 50 50 H 0.96993 * 120.00598 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7715 -1.2239 5 7 2.3179 -2.1428 -0.7213 6 6 2.0835 -3.3100 -1.3532 7 8 2.3429 -4.3596 -0.8038 8 6 1.4993 -3.3109 -2.7423 9 6 1.3343 -4.7533 -3.2253 10 8 0.5853 -5.5610 -2.3150 11 6 2.6493 -5.4019 -3.6889 12 6 1.8414 -6.0362 -4.8334 13 6 0.8574 -4.8640 -4.6831 14 6 2.8842 -1.9399 0.6354 15 6 2.0664 -0.7704 1.2244 16 1 1.2399 -1.1504 1.8248 17 7 2.9292 0.0981 2.0363 18 6 2.9958 -0.3761 3.4251 19 6 3.8872 0.5380 4.2258 20 8 4.4154 1.4905 3.6919 21 7 4.0982 0.2966 5.5348 22 6 4.9095 1.1278 6.2631 23 1 5.3799 1.9758 5.7877 24 6 5.1267 0.8792 7.6128 25 7 4.5540 -0.1524 8.1914 26 14 6.2316 2.0122 8.6053 27 1 5.6792 3.3903 8.5787 28 1 6.2984 1.5332 10.0094 29 1 7.5951 2.0140 8.0169 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3632 -1.0270 -0.0391 33 1 1.3254 -0.7878 -2.0206 34 1 2.9969 -0.3223 -1.5779 35 1 0.5264 -2.8195 -2.7277 36 1 2.1667 -2.7753 -3.4175 37 1 0.8955 -5.5136 -1.4004 38 1 3.3953 -4.6828 -4.0273 39 1 3.0505 -6.1287 -2.9826 40 1 1.4098 -7.0040 -4.5789 41 1 2.3684 -6.0441 -5.7876 42 1 -0.1882 -5.1566 -4.7793 43 1 1.1122 -3.9972 -5.2929 44 1 3.9389 -1.6721 0.5716 45 1 2.7549 -2.8370 1.2409 46 1 3.8518 0.1694 1.6339 47 1 1.9950 -0.3769 3.8571 48 1 3.4008 -1.3878 3.4446 49 1 3.6760 -0.4653 5.9617 50 1 4.7058 -0.3262 9.1335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214573486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:52 Heat of formation + Delta-G solvation = -95.504474 kcal Electronic energy + Delta-G solvation = -29708.441713 eV Core-core repulsion = 25543.223637 eV Total energy + Delta-G solvation = -4165.218076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89936 -39.67221 -38.37483 -37.77854 -34.87363 -34.62173 -33.82487 -32.57610 -31.26002 -31.02729 -28.72611 -26.81390 -26.23526 -26.04873 -24.37746 -23.48974 -22.51192 -20.42062 -19.92774 -19.67541 -19.19911 -17.92732 -17.52739 -16.77153 -16.57458 -16.09034 -15.92812 -15.46455 -15.39527 -14.98172 -14.81409 -14.52665 -14.16019 -13.89485 -13.82610 -13.69591 -13.42018 -13.28184 -13.00206 -12.94087 -12.63996 -12.34790 -12.23661 -12.06722 -11.90842 -11.69593 -11.56120 -11.52530 -11.20640 -11.19628 -11.14507 -11.02782 -10.96486 -10.75065 -10.46014 -10.23622 -10.01838 -9.94417 -9.52629 -9.10403 -8.52084 -8.15031 -7.99063 -6.43822 -3.85012 2.25028 2.55746 3.18500 3.24634 3.28725 3.78277 3.86927 3.91956 4.06092 4.21449 4.23681 4.29806 4.31515 4.46025 4.53632 4.64117 4.80618 4.91178 4.96988 5.00698 5.05137 5.11736 5.20064 5.23207 5.27275 5.30397 5.34261 5.41392 5.49926 5.54416 5.58539 5.61987 5.64863 5.75744 5.77058 5.87117 5.90725 5.94379 5.96810 6.03247 6.11402 6.25316 7.10379 7.17372 7.49808 7.52790 7.53339 7.84587 8.03091 8.58043 9.15059 9.51202 10.02163 10.73671 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.001895 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.315195 B =14772.183204 C =15359.749816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.104 0.896 4 C 0.100 3.900 5 N -0.617 5.617 6 C 0.537 3.463 7 O -0.546 6.546 8 C -0.158 4.158 9 C 0.128 3.872 10 O -0.548 6.548 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.073 3.927 15 C 0.079 3.921 16 H 0.091 0.909 17 N -0.654 5.654 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.390 0.610 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.351 0.649 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -7.366 -24.415 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.122 0.878 4 C -0.023 4.023 5 N -0.350 5.350 6 C 0.327 3.673 7 O -0.425 6.425 8 C -0.198 4.198 9 C 0.086 3.914 10 O -0.361 6.361 11 C -0.200 4.200 12 C -0.172 4.172 13 C -0.165 4.165 14 C -0.052 4.052 15 C -0.033 4.033 16 H 0.109 0.891 17 N -0.286 5.286 18 C -0.085 4.085 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.198 5.198 22 C -0.431 4.431 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.172 0.828 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.342 -7.119 -24.690 27.341 hybrid contribution 1.231 -0.479 1.358 1.894 sum -8.111 -7.598 -23.331 25.843 Atomic orbital electron populations 1.21806 0.94070 1.01546 1.02385 1.22165 0.96352 1.00673 0.92691 0.87830 1.22647 1.01016 0.81216 0.97411 1.49019 1.62603 1.05777 1.17614 1.20312 0.77423 0.82102 0.87431 1.90570 1.53549 1.30399 1.67993 1.22338 1.03225 1.00141 0.94121 1.21812 0.92588 0.87065 0.89963 1.86334 1.58373 1.68142 1.23209 1.23580 0.96873 1.00815 0.98733 1.22741 0.97653 0.98294 0.98536 1.23057 1.00783 0.99367 0.93299 1.23372 0.97853 1.00610 0.83323 1.22642 0.96256 0.90159 0.94213 0.89068 1.60266 1.17953 1.49212 1.01142 1.21750 1.00824 0.96495 0.89390 1.19762 0.86335 0.88134 0.83270 1.90524 1.53876 1.31953 1.70546 1.41856 1.43233 1.27262 1.07471 1.19651 1.23569 1.08544 0.91290 0.87943 1.25275 0.98280 0.97303 0.97058 1.69599 1.43836 1.27885 1.12870 0.85909 0.80153 0.79933 0.78166 1.19868 1.20964 1.19909 0.91732 0.92444 0.93009 0.90066 0.90538 0.88031 0.87805 0.75508 0.89878 0.90537 0.89778 0.91368 0.90436 0.88895 0.90753 0.89708 0.82800 0.89444 0.93670 0.77430 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.91 37.16 0.33 -0.78 16 2 C -0.10 -0.87 3.44 -89.22 -0.31 -1.18 16 3 H 0.10 1.00 7.95 -51.93 -0.41 0.59 16 4 C 0.10 0.73 6.47 -2.41 -0.02 0.71 16 5 N -0.62 -5.95 3.32 -169.08 -0.56 -6.51 16 6 C 0.54 5.64 7.68 -10.99 -0.08 5.56 16 7 O -0.55 -7.44 13.87 -14.25 -0.20 -7.64 16 8 C -0.16 -1.18 4.32 -27.88 -0.12 -1.30 16 9 C 0.13 1.14 1.10 -89.80 -0.10 1.04 16 10 O -0.55 -6.36 13.39 -55.04 -0.74 -7.09 16 11 C -0.16 -1.41 7.16 -25.92 -0.19 -1.59 16 12 C -0.13 -1.00 8.02 -25.92 -0.21 -1.21 16 13 C -0.13 -0.89 7.47 -25.92 -0.19 -1.08 16 14 C 0.07 0.80 6.71 -2.26 -0.02 0.79 16 15 C 0.08 0.88 3.02 -66.32 -0.20 0.68 16 16 H 0.09 1.03 7.41 -51.93 -0.38 0.65 16 17 N -0.65 -9.50 5.84 -106.51 -0.62 -10.12 16 18 C 0.05 0.80 6.01 -4.97 -0.03 0.77 16 19 C 0.44 10.08 7.82 -10.99 -0.09 10.00 16 20 O -0.58 -15.43 15.78 5.54 0.09 -15.34 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.43 7.03 -51.93 -0.36 0.06 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.10 0.56 8.05 -51.93 -0.42 0.14 16 37 H 0.39 4.66 6.20 45.56 0.28 4.94 16 38 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.69 8.14 -51.94 -0.42 0.27 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 44 H 0.07 0.84 7.58 -51.93 -0.39 0.44 16 45 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 46 H 0.35 5.28 7.83 -39.29 -0.31 4.97 16 47 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -32.44 403.44 -9.48 -41.92 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -7.72 Total: 16.12 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.45 Total: 4.44 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.52 Total: -54.39 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.85 Total: -30.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.44 -9.48 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214573486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.586 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds