Wall clock time and date at job start Tue Mar 31 2020 23:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.30122 * 2 1 4 4 C 1.54391 * 110.43261 * 237.77266 * 2 1 3 5 5 N 1.48150 * 104.61300 * 264.94538 * 4 2 1 6 6 C 1.34776 * 127.83335 * 140.41116 * 5 4 2 7 7 O 1.21277 * 119.99915 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00321 * 0.02562 * 6 5 4 9 9 C 1.53005 * 109.47334 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.84770 * 53.80056 * 9 8 6 11 11 C 1.53783 * 113.60999 * 282.49678 * 9 8 6 12 12 C 1.53785 * 87.07933 * 220.01672 * 11 9 8 13 13 C 1.53780 * 113.61368 * 185.00267 * 9 8 6 14 14 C 1.48415 * 104.33809 * 320.38760 * 5 4 2 15 15 C 1.54281 * 110.34526 * 122.17851 * 2 1 3 16 16 H 1.09002 * 110.34289 * 0.10705 * 15 2 1 17 17 N 1.46900 * 110.34075 * 237.95482 * 15 2 1 18 18 C 1.46907 * 110.99543 * 156.47597 * 17 15 2 19 19 C 1.50706 * 109.46837 * 180.02562 * 18 17 15 20 20 O 1.21299 * 119.99980 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99945 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99999 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00082 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00095 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00188 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46953 * 59.99837 * 26 24 22 28 28 H 1.48503 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46942 * 300.00022 * 26 24 22 30 30 H 1.08995 * 109.46915 * 297.81931 * 1 2 3 31 31 H 1.09000 * 109.47292 * 57.82212 * 1 2 3 32 32 H 1.09001 * 109.46306 * 177.82024 * 1 2 3 33 33 H 1.08999 * 110.40947 * 23.73299 * 4 2 1 34 34 H 1.09001 * 110.40613 * 146.16376 * 4 2 1 35 35 H 1.09004 * 109.47416 * 300.00075 * 8 6 5 36 36 H 1.09002 * 109.47124 * 59.99937 * 8 6 5 37 37 H 0.96698 * 114.00331 * 309.66342 * 10 9 8 38 38 H 1.08999 * 113.61731 * 334.56417 * 11 9 8 39 39 H 1.08996 * 113.61426 * 105.46842 * 11 9 8 40 40 H 1.08988 * 113.61355 * 270.88565 * 12 11 9 41 41 H 1.09002 * 113.61048 * 139.97599 * 12 11 9 42 42 H 1.09007 * 113.60744 * 254.52929 * 13 9 8 43 43 H 1.08994 * 113.61623 * 25.34177 * 13 9 8 44 44 H 1.08997 * 110.44874 * 280.87091 * 14 5 4 45 45 H 1.09004 * 110.48780 * 158.35620 * 14 5 4 46 46 H 1.00902 * 110.99791 * 280.42280 * 17 15 2 47 47 H 1.09002 * 109.46797 * 299.99569 * 18 17 15 48 48 H 1.08995 * 109.47198 * 60.00074 * 18 17 15 49 49 H 0.97000 * 119.99820 * 359.97438 * 21 19 18 50 50 H 0.96993 * 120.00598 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7715 -1.2239 5 7 2.3179 -2.1428 -0.7213 6 6 2.0835 -3.3100 -1.3532 7 8 2.3429 -4.3596 -0.8038 8 6 1.4993 -3.3109 -2.7423 9 6 1.3343 -4.7533 -3.2253 10 8 0.5853 -5.5610 -2.3150 11 6 2.6493 -5.4019 -3.6889 12 6 1.8414 -6.0362 -4.8334 13 6 0.8574 -4.8640 -4.6831 14 6 2.8842 -1.9399 0.6354 15 6 2.0664 -0.7704 1.2244 16 1 1.2399 -1.1504 1.8248 17 7 2.9292 0.0981 2.0363 18 6 2.9958 -0.3761 3.4251 19 6 3.8872 0.5380 4.2258 20 8 4.4154 1.4905 3.6919 21 7 4.0982 0.2966 5.5348 22 6 4.9095 1.1278 6.2631 23 1 5.3799 1.9758 5.7877 24 6 5.1267 0.8792 7.6128 25 7 4.5540 -0.1524 8.1914 26 14 6.2316 2.0122 8.6053 27 1 5.6792 3.3903 8.5787 28 1 6.2984 1.5332 10.0094 29 1 7.5951 2.0140 8.0169 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3632 -1.0270 -0.0391 33 1 1.3254 -0.7878 -2.0206 34 1 2.9969 -0.3223 -1.5779 35 1 0.5264 -2.8195 -2.7277 36 1 2.1667 -2.7753 -3.4175 37 1 0.8955 -5.5136 -1.4004 38 1 3.3953 -4.6828 -4.0273 39 1 3.0505 -6.1287 -2.9826 40 1 1.4098 -7.0040 -4.5789 41 1 2.3684 -6.0441 -5.7876 42 1 -0.1882 -5.1566 -4.7793 43 1 1.1122 -3.9972 -5.2929 44 1 3.9389 -1.6721 0.5716 45 1 2.7549 -2.8370 1.2409 46 1 3.8518 0.1694 1.6339 47 1 1.9950 -0.3769 3.8571 48 1 3.4008 -1.3878 3.4446 49 1 3.6760 -0.4653 5.9617 50 1 4.7058 -0.3262 9.1335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214573486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:51 Heat of formation + Delta-G solvation = -119.530024 kcal Electronic energy + Delta-G solvation = -29709.483539 eV Core-core repulsion = 25543.223637 eV Total energy + Delta-G solvation = -4166.259902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65260 -40.52922 -39.95224 -38.77404 -36.21751 -35.60308 -35.38783 -33.43403 -33.21606 -31.74382 -29.79243 -27.74190 -27.40237 -26.65373 -25.90947 -24.35702 -23.35094 -21.41844 -20.93414 -20.57115 -20.33927 -19.90053 -18.33861 -17.82942 -17.43424 -17.20646 -16.96697 -16.64077 -16.36647 -16.24796 -15.91079 -15.63625 -15.57798 -15.23971 -14.82916 -14.52893 -14.27485 -14.22231 -14.00033 -13.80137 -13.70491 -13.49741 -13.31115 -13.18807 -13.00272 -12.84904 -12.78194 -12.54405 -12.44099 -12.16381 -12.13969 -12.00085 -11.88348 -11.77622 -11.75339 -11.50625 -11.40771 -10.78653 -10.62196 -10.35930 -10.02991 -9.90982 -9.35326 -8.47259 -5.96350 1.39466 1.41465 1.48488 1.52490 1.80337 2.03931 2.28414 2.86401 3.13856 3.19789 3.29425 3.47758 3.58124 3.62671 3.69908 3.74703 3.90944 3.93128 4.11791 4.18390 4.24118 4.31464 4.38795 4.42602 4.48083 4.53349 4.55076 4.65632 4.72564 4.76643 4.78651 4.83043 4.84334 4.86953 4.96976 5.04675 5.12834 5.18017 5.29684 5.30775 5.39815 5.43021 5.44513 5.88044 6.07277 6.33312 6.43475 6.58372 6.70437 7.06216 7.11246 7.54886 8.09440 8.69803 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.001895 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.315195 B =14772.183204 C =15359.749816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.098 0.902 4 C 0.103 3.897 5 N -0.615 5.615 6 C 0.530 3.470 7 O -0.585 6.585 8 C -0.148 4.148 9 C 0.111 3.889 10 O -0.568 6.568 11 C -0.167 4.167 12 C -0.136 4.136 13 C -0.116 4.116 14 C 0.075 3.925 15 C 0.083 3.917 16 H 0.089 0.911 17 N -0.661 5.661 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.271 1.271 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.384 0.616 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.348 0.652 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -6.490 -26.488 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.116 0.884 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.322 3.678 7 O -0.468 6.468 8 C -0.187 4.187 9 C 0.069 3.931 10 O -0.380 6.380 11 C -0.205 4.205 12 C -0.173 4.173 13 C -0.153 4.153 14 C -0.050 4.050 15 C -0.028 4.028 16 H 0.107 0.893 17 N -0.292 5.292 18 C -0.070 4.070 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.142 0.858 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.168 0.832 47 H 0.122 0.878 48 H 0.080 0.920 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.079 -6.245 -26.789 29.296 hybrid contribution 1.445 -0.779 1.957 2.554 sum -8.634 -7.023 -24.832 27.212 Atomic orbital electron populations 1.21774 0.93104 1.01689 1.02785 1.22133 0.97032 1.00185 0.92098 0.88383 1.22808 1.02471 0.79338 0.97275 1.49075 1.62035 1.06717 1.16898 1.20963 0.76880 0.81530 0.88441 1.90562 1.55182 1.31898 1.69114 1.22363 1.04604 0.99525 0.92248 1.22156 0.92643 0.87663 0.90593 1.86314 1.59134 1.69265 1.23245 1.23629 0.97320 1.00795 0.98725 1.22736 0.97792 0.97908 0.98853 1.23110 1.00276 1.00072 0.91881 1.23196 0.97785 0.99679 0.84364 1.22675 0.95364 0.90115 0.94666 0.89273 1.60306 1.18191 1.50396 1.00355 1.21593 0.99989 0.95480 0.89915 1.20808 0.85710 0.88056 0.82822 1.90491 1.55280 1.33792 1.71180 1.41943 1.43511 1.27298 1.08297 1.19645 1.25259 1.09121 0.92356 0.90116 1.26069 0.99248 0.98625 0.97468 1.69667 1.44414 1.28756 1.13331 0.84975 0.78222 0.78028 0.77037 1.19615 1.19620 1.19648 0.93042 0.90264 0.93077 0.86925 0.89424 0.86043 0.84817 0.76185 0.88296 0.93381 0.91407 0.89514 0.90881 0.85765 0.91118 0.91502 0.83227 0.87835 0.91959 0.77055 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.91 71.98 0.64 -1.17 16 2 C -0.09 -1.46 3.44 -9.89 -0.03 -1.49 16 3 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16 4 C 0.10 1.16 6.47 86.53 0.56 1.72 16 5 N -0.61 -10.72 3.32 -807.25 -2.68 -13.40 16 6 C 0.53 10.37 7.68 87.66 0.67 11.04 16 7 O -0.59 -16.17 13.87 15.92 0.22 -15.95 16 8 C -0.15 -1.74 4.32 29.85 0.13 -1.61 16 9 C 0.11 1.80 1.10 -10.27 -0.01 1.79 16 10 O -0.57 -13.22 13.39 -130.04 -1.74 -14.96 16 11 C -0.17 -2.74 7.16 31.12 0.22 -2.52 16 12 C -0.14 -1.82 8.02 31.12 0.25 -1.57 16 13 C -0.12 -1.30 7.47 31.12 0.23 -1.06 16 14 C 0.07 1.61 6.71 86.48 0.58 2.19 16 15 C 0.08 1.75 3.02 45.82 0.14 1.88 16 16 H 0.09 1.93 7.41 -2.39 -0.02 1.92 16 17 N -0.66 -18.86 5.84 -490.88 -2.87 -21.72 16 18 C 0.06 2.07 6.01 85.56 0.51 2.58 16 19 C 0.44 20.45 7.82 87.66 0.69 21.13 16 20 O -0.62 -33.50 15.78 -3.09 -0.05 -33.55 16 21 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 22 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.62 7.03 -2.39 -0.02 0.60 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.99 7.95 -2.39 -0.02 0.97 16 36 H 0.13 0.80 8.05 -2.39 -0.02 0.78 16 37 H 0.38 9.61 6.20 -74.06 -0.46 9.15 16 38 H 0.10 1.27 8.04 -2.39 -0.02 1.25 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.12 0.62 8.10 -2.39 -0.02 0.60 16 44 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 45 H 0.07 1.67 7.89 -2.39 -0.02 1.65 16 46 H 0.35 10.38 7.83 -89.69 -0.70 9.68 16 47 H 0.10 3.12 8.07 -2.39 -0.02 3.10 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -72.81 403.44 -1.49 -74.31 By element: Atomic # 1 Polarization: 47.33 SS G_CDS: -0.92 Total: 46.40 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.86 Total: 14.52 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -6.89 Total: -115.63 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -1.57 Total: -64.47 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.81 -1.49 -74.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214573486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.224 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds