Wall clock time and date at job start Tue Mar 31 2020 23:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.86852 * 2 1 4 4 C 1.54100 * 109.87950 * 238.99594 * 2 1 3 5 5 C 1.54817 * 104.18606 * 238.39547 * 4 2 1 6 6 C 1.54998 * 102.12466 * 339.09929 * 5 4 2 7 7 H 1.08997 * 110.62197 * 278.54323 * 6 5 4 8 8 C 1.50696 * 110.61941 * 155.53916 * 6 5 4 9 9 O 1.21276 * 120.00527 * 245.00081 * 8 6 5 10 10 N 1.34784 * 119.99721 * 65.00300 * 8 6 5 11 11 C 1.47482 * 127.03186 * 0.02562 * 10 8 6 12 12 C 1.54011 * 107.08179 * 154.51724 * 11 10 8 13 13 H 1.08997 * 110.32821 * 120.20206 * 12 11 10 14 14 C 1.53005 * 110.32562 * 242.31311 * 12 11 10 15 15 C 1.54613 * 105.04461 * 1.30684 * 12 11 10 16 16 H 1.09002 * 110.73885 * 263.51114 * 15 12 11 17 17 N 1.46900 * 110.73961 * 140.36438 * 15 12 11 18 18 C 1.46906 * 110.99931 * 155.00017 * 17 15 12 19 19 C 1.50692 * 109.47041 * 180.02562 * 18 17 15 20 20 O 1.21287 * 120.00088 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00084 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00253 * 179.97438 * 21 19 18 23 23 H 1.07995 * 119.99920 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00054 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99997 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00111 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47250 * 89.99586 * 26 24 22 28 28 H 1.48502 * 109.47199 * 209.99934 * 26 24 22 29 29 H 1.48503 * 109.46921 * 329.99691 * 26 24 22 30 30 C 1.48113 * 127.03141 * 179.71025 * 10 8 6 31 31 O 1.43746 * 110.00491 * 121.08478 * 2 1 3 32 32 H 1.08999 * 109.47436 * 181.00407 * 1 2 3 33 33 H 1.09005 * 109.47578 * 301.00283 * 1 2 3 34 34 H 1.09000 * 109.47518 * 61.00584 * 1 2 3 35 35 H 1.08991 * 110.48958 * 119.72262 * 4 2 1 36 36 H 1.08995 * 110.60333 * 357.12007 * 4 2 1 37 37 H 1.09002 * 110.90844 * 97.31763 * 5 4 2 38 38 H 1.08997 * 110.90682 * 220.88854 * 5 4 2 39 39 H 1.08996 * 109.91654 * 273.87614 * 11 10 8 40 40 H 1.08998 * 109.91414 * 35.16219 * 11 10 8 41 41 H 1.08999 * 109.46837 * 58.54929 * 14 12 11 42 42 H 1.08999 * 109.46830 * 178.54979 * 14 12 11 43 43 H 1.09003 * 109.47004 * 298.54549 * 14 12 11 44 44 H 1.00894 * 110.99899 * 31.05126 * 17 15 12 45 45 H 1.09005 * 109.46844 * 300.00682 * 18 17 15 46 46 H 1.09002 * 109.47036 * 59.99750 * 18 17 15 47 47 H 0.97004 * 120.00075 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00212 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.66594 * 337.76372 * 30 10 8 50 50 H 1.08994 * 110.66497 * 100.88900 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9227 -1.8882 -0.6602 6 6 3.2426 -1.3614 0.7619 7 1 4.0716 -0.6543 0.7319 8 6 3.5515 -2.5043 1.6942 9 8 2.8180 -2.7379 2.6313 10 7 4.6433 -3.2670 1.4866 11 6 5.6348 -3.1229 0.4044 12 6 6.9547 -3.7293 0.9164 13 1 7.2684 -4.5512 0.2730 14 6 8.0443 -2.6568 0.9764 15 6 6.6327 -4.2509 2.3358 16 1 6.9225 -3.5199 3.0907 17 7 7.2962 -5.5386 2.5798 18 6 7.5087 -5.7575 4.0168 19 6 8.1904 -7.0848 4.2273 20 8 8.4712 -7.7802 3.2742 21 7 8.4871 -7.4996 5.4749 22 6 9.1069 -8.7074 5.6665 23 1 9.3577 -9.3263 4.8177 24 6 9.4133 -9.1348 6.9526 25 7 10.0078 -10.2922 7.1362 26 14 8.9802 -8.0640 8.4207 27 1 7.6168 -8.4073 8.8987 28 1 9.9607 -8.2986 9.5110 29 1 9.0187 -6.6347 8.0194 30 6 5.0960 -4.4173 2.3024 31 8 2.0217 -0.6974 1.1568 32 1 -0.3634 -1.0275 0.0180 33 1 -0.3634 0.5293 0.8809 34 1 -0.3634 0.4981 -0.8988 35 1 2.6597 -0.0826 -1.8588 36 1 1.2261 -1.1547 -1.8219 37 1 2.3591 -2.8200 -0.6122 38 1 3.8355 -2.0173 -1.2416 39 1 5.2982 -3.6609 -0.4817 40 1 5.7774 -2.0681 0.1696 41 1 7.7221 -1.8479 1.6321 42 1 8.9640 -3.0946 1.3644 43 1 8.2230 -2.2640 -0.0245 44 1 8.1662 -5.5989 2.0724 45 1 8.1349 -4.9601 4.4171 46 1 6.5472 -5.7568 4.5305 47 1 8.2622 -6.9436 6.2372 48 1 10.2214 -10.5907 8.0341 49 1 4.6820 -4.3616 3.3092 50 1 4.8236 -5.3585 1.8249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215594440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:08 Heat of formation + Delta-G solvation = -105.395223 kcal Electronic energy + Delta-G solvation = -29753.407660 eV Core-core repulsion = 25587.760689 eV Total energy + Delta-G solvation = -4165.646971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85524 -39.59640 -38.47865 -37.78513 -34.90348 -33.89134 -32.85766 -32.66682 -32.08805 -31.66114 -29.31435 -27.39677 -26.71426 -25.99720 -24.09748 -23.20293 -22.02059 -21.45899 -20.55686 -19.79230 -19.33198 -18.32053 -17.69116 -16.96755 -16.66875 -16.29992 -15.73379 -15.63409 -15.42972 -14.98694 -14.71219 -14.41126 -14.15042 -13.99890 -13.87941 -13.65790 -13.45365 -13.22436 -13.07220 -12.99230 -12.74890 -12.61791 -12.48175 -12.29137 -12.23245 -12.10250 -11.97026 -11.72371 -11.41629 -11.31935 -11.26864 -11.18450 -11.12849 -10.80675 -10.59447 -10.30212 -9.98187 -9.83916 -9.57987 -8.97945 -8.61845 -8.26819 -8.18232 -6.31776 -3.83287 2.32116 2.39485 3.02783 3.07969 3.15786 3.44929 3.71995 3.88483 3.99124 4.08064 4.10245 4.21085 4.33980 4.35633 4.51018 4.52913 4.62834 4.73051 4.80309 4.91492 5.00770 5.08425 5.09089 5.11766 5.17852 5.18932 5.22861 5.25473 5.37492 5.44161 5.49270 5.53484 5.57770 5.58655 5.69301 5.71348 5.75242 5.76480 5.82814 5.87569 5.92208 6.05083 6.43147 7.01535 7.23854 7.47353 7.57079 7.91325 8.13378 8.58539 8.93970 9.41565 9.81027 10.81206 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002025 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.213845 B =13824.641862 C =14568.365674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.144 4.144 6 C 0.065 3.935 7 H 0.095 0.905 8 C 0.538 3.462 9 O -0.518 6.518 10 N -0.619 5.619 11 C 0.106 3.894 12 C -0.111 4.111 13 H 0.100 0.900 14 C -0.146 4.146 15 C 0.077 3.923 16 H 0.060 0.940 17 N -0.655 5.655 18 C 0.046 3.954 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.115 3.885 31 O -0.344 6.344 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.356 0.644 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.083 0.917 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 24.630 -17.545 32.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.188 4.188 5 C -0.182 4.182 6 C 0.004 3.996 7 H 0.112 0.888 8 C 0.325 3.675 9 O -0.392 6.392 10 N -0.356 5.356 11 C -0.017 4.017 12 C -0.130 4.130 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.035 4.035 16 H 0.078 0.922 17 N -0.289 5.289 18 C -0.086 4.086 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.195 1.195 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.007 4.007 31 O -0.263 6.263 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.177 0.823 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.241 23.562 -17.321 32.101 hybrid contribution 0.651 1.354 1.316 1.997 sum -12.589 24.916 -16.005 32.178 Atomic orbital electron populations 1.21927 0.93345 1.03132 1.02452 1.22820 0.95625 0.95726 0.84767 0.91097 1.23033 1.00373 0.97346 0.98089 1.23126 1.01239 0.99757 0.94051 1.22888 0.90294 0.93288 0.93142 0.88760 1.19734 0.79800 0.82457 0.85508 1.90756 1.47529 1.70002 1.30938 1.48629 1.24459 1.32180 1.30302 1.22266 0.87882 1.01146 0.90435 1.22308 0.94500 0.99097 0.97087 0.88168 1.21894 0.98277 0.98102 1.02110 1.22603 0.94349 0.90725 0.95806 0.92182 1.59987 1.30725 1.29855 1.08357 1.21799 1.00765 0.96481 0.89600 1.19651 0.84779 0.88268 0.83744 1.90563 1.56828 1.56925 1.40386 1.42209 1.54821 1.19747 1.06112 1.19426 1.34138 0.94211 0.95635 0.86254 1.25041 0.97165 0.96337 0.97589 1.69618 1.40424 1.19215 1.22782 0.86676 0.79333 0.80246 0.83155 1.19531 1.20179 1.19538 1.22471 0.93091 0.88450 0.96718 1.89060 1.37910 1.66922 1.32397 0.91704 0.91721 0.91144 0.90209 0.89801 0.89810 0.89221 0.90863 0.90733 0.92506 0.91911 0.92014 0.82295 0.93547 0.89354 0.79663 0.91595 0.89884 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.37 37.15 0.35 -0.63 16 2 C 0.07 0.49 4.05 -26.16 -0.11 0.39 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.77 6.64 -25.20 -0.17 -0.94 16 5 C -0.14 -0.91 5.99 -24.72 -0.15 -1.06 16 6 C 0.06 0.60 3.05 -26.83 -0.08 0.51 16 7 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 8 C 0.54 6.73 7.30 -10.98 -0.08 6.65 16 9 O -0.52 -8.99 16.78 -13.47 -0.23 -9.21 16 10 N -0.62 -6.47 3.29 -169.99 -0.56 -7.03 16 11 C 0.11 0.74 5.25 -2.98 -0.02 0.73 16 12 C -0.11 -0.88 3.08 -89.24 -0.27 -1.15 16 13 H 0.10 0.82 7.94 -51.93 -0.41 0.40 16 14 C -0.15 -0.97 8.90 37.16 0.33 -0.64 16 15 C 0.08 0.83 2.92 -66.02 -0.19 0.64 16 16 H 0.06 0.66 7.55 -51.93 -0.39 0.27 16 17 N -0.66 -9.27 5.99 -106.20 -0.64 -9.91 16 18 C 0.05 0.74 6.03 -4.98 -0.03 0.71 16 19 C 0.45 10.01 7.82 -10.99 -0.09 9.92 16 20 O -0.57 -14.82 15.78 5.55 0.09 -14.73 16 21 N -0.59 -13.97 5.09 -10.97 -0.06 -14.02 16 22 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 26 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 30 C 0.12 1.38 6.76 -2.31 -0.02 1.37 16 31 O -0.34 -3.93 10.48 -54.26 -0.57 -4.50 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.37 7.70 -51.93 -0.40 -0.03 16 37 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 38 H 0.09 0.36 7.30 -51.93 -0.38 -0.01 16 39 H 0.07 0.43 8.00 -51.93 -0.42 0.01 16 40 H 0.07 0.37 7.05 -51.93 -0.37 0.01 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.36 5.09 8.03 -39.30 -0.32 4.77 16 45 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.08 1.12 7.85 -51.93 -0.41 0.72 16 50 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -35.96 400.92 -8.98 -44.94 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.35 Total: 9.82 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.77 Total: 8.78 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.48 Total: -55.90 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.71 Total: -28.44 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.96 -8.98 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215594440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.457 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds