Wall clock time and date at job start Tue Mar 31 2020 23:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.86852 * 2 1 4 4 C 1.54100 * 109.87950 * 238.99594 * 2 1 3 5 5 C 1.54817 * 104.18606 * 238.39547 * 4 2 1 6 6 C 1.54998 * 102.12466 * 339.09929 * 5 4 2 7 7 H 1.08997 * 110.62197 * 278.54323 * 6 5 4 8 8 C 1.50696 * 110.61941 * 155.53916 * 6 5 4 9 9 O 1.21276 * 120.00527 * 245.00081 * 8 6 5 10 10 N 1.34784 * 119.99721 * 65.00300 * 8 6 5 11 11 C 1.47482 * 127.03186 * 0.02562 * 10 8 6 12 12 C 1.54011 * 107.08179 * 154.51724 * 11 10 8 13 13 H 1.08997 * 110.32821 * 120.20206 * 12 11 10 14 14 C 1.53005 * 110.32562 * 242.31311 * 12 11 10 15 15 C 1.54613 * 105.04461 * 1.30684 * 12 11 10 16 16 H 1.09002 * 110.73885 * 263.51114 * 15 12 11 17 17 N 1.46900 * 110.73961 * 140.36438 * 15 12 11 18 18 C 1.46906 * 110.99931 * 155.00017 * 17 15 12 19 19 C 1.50692 * 109.47041 * 180.02562 * 18 17 15 20 20 O 1.21287 * 120.00088 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00084 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00253 * 179.97438 * 21 19 18 23 23 H 1.07995 * 119.99920 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00054 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99997 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00111 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47250 * 89.99586 * 26 24 22 28 28 H 1.48502 * 109.47199 * 209.99934 * 26 24 22 29 29 H 1.48503 * 109.46921 * 329.99691 * 26 24 22 30 30 C 1.48113 * 127.03141 * 179.71025 * 10 8 6 31 31 O 1.43746 * 110.00491 * 121.08478 * 2 1 3 32 32 H 1.08999 * 109.47436 * 181.00407 * 1 2 3 33 33 H 1.09005 * 109.47578 * 301.00283 * 1 2 3 34 34 H 1.09000 * 109.47518 * 61.00584 * 1 2 3 35 35 H 1.08991 * 110.48958 * 119.72262 * 4 2 1 36 36 H 1.08995 * 110.60333 * 357.12007 * 4 2 1 37 37 H 1.09002 * 110.90844 * 97.31763 * 5 4 2 38 38 H 1.08997 * 110.90682 * 220.88854 * 5 4 2 39 39 H 1.08996 * 109.91654 * 273.87614 * 11 10 8 40 40 H 1.08998 * 109.91414 * 35.16219 * 11 10 8 41 41 H 1.08999 * 109.46837 * 58.54929 * 14 12 11 42 42 H 1.08999 * 109.46830 * 178.54979 * 14 12 11 43 43 H 1.09003 * 109.47004 * 298.54549 * 14 12 11 44 44 H 1.00894 * 110.99899 * 31.05126 * 17 15 12 45 45 H 1.09005 * 109.46844 * 300.00682 * 18 17 15 46 46 H 1.09002 * 109.47036 * 59.99750 * 18 17 15 47 47 H 0.97004 * 120.00075 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00212 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.66594 * 337.76372 * 30 10 8 50 50 H 1.08994 * 110.66497 * 100.88900 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9227 -1.8882 -0.6602 6 6 3.2426 -1.3614 0.7619 7 1 4.0716 -0.6543 0.7319 8 6 3.5515 -2.5043 1.6942 9 8 2.8180 -2.7379 2.6313 10 7 4.6433 -3.2670 1.4866 11 6 5.6348 -3.1229 0.4044 12 6 6.9547 -3.7293 0.9164 13 1 7.2684 -4.5512 0.2730 14 6 8.0443 -2.6568 0.9764 15 6 6.6327 -4.2509 2.3358 16 1 6.9225 -3.5199 3.0907 17 7 7.2962 -5.5386 2.5798 18 6 7.5087 -5.7575 4.0168 19 6 8.1904 -7.0848 4.2273 20 8 8.4712 -7.7802 3.2742 21 7 8.4871 -7.4996 5.4749 22 6 9.1069 -8.7074 5.6665 23 1 9.3577 -9.3263 4.8177 24 6 9.4133 -9.1348 6.9526 25 7 10.0078 -10.2922 7.1362 26 14 8.9802 -8.0640 8.4207 27 1 7.6168 -8.4073 8.8987 28 1 9.9607 -8.2986 9.5110 29 1 9.0187 -6.6347 8.0194 30 6 5.0960 -4.4173 2.3024 31 8 2.0217 -0.6974 1.1568 32 1 -0.3634 -1.0275 0.0180 33 1 -0.3634 0.5293 0.8809 34 1 -0.3634 0.4981 -0.8988 35 1 2.6597 -0.0826 -1.8588 36 1 1.2261 -1.1547 -1.8219 37 1 2.3591 -2.8200 -0.6122 38 1 3.8355 -2.0173 -1.2416 39 1 5.2982 -3.6609 -0.4817 40 1 5.7774 -2.0681 0.1696 41 1 7.7221 -1.8479 1.6321 42 1 8.9640 -3.0946 1.3644 43 1 8.2230 -2.2640 -0.0245 44 1 8.1662 -5.5989 2.0724 45 1 8.1349 -4.9601 4.4171 46 1 6.5472 -5.7568 4.5305 47 1 8.2622 -6.9436 6.2372 48 1 10.2214 -10.5907 8.0341 49 1 4.6820 -4.3616 3.3092 50 1 4.8236 -5.3585 1.8249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215594440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:07 Heat of formation + Delta-G solvation = -133.441300 kcal Electronic energy + Delta-G solvation = -29754.623829 eV Core-core repulsion = 25587.760689 eV Total energy + Delta-G solvation = -4166.863140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63559 -40.50027 -40.01695 -38.81578 -36.27603 -35.64439 -33.79103 -33.53922 -33.30848 -32.67745 -30.28146 -28.47961 -27.49798 -26.95497 -25.65446 -23.91198 -22.83273 -21.95596 -21.48714 -21.16580 -20.61418 -20.14836 -18.45682 -17.91782 -17.49419 -17.33515 -16.93896 -16.82418 -16.55625 -16.36774 -15.76189 -15.53428 -15.17224 -14.97282 -14.74506 -14.59482 -14.53728 -14.40710 -14.18108 -13.94252 -13.76517 -13.63086 -13.53761 -13.21784 -13.07109 -12.97129 -12.84284 -12.76823 -12.59835 -12.42475 -12.03495 -11.98266 -11.93224 -11.84451 -11.61362 -11.56581 -11.53030 -11.03053 -10.64200 -10.45167 -10.25981 -9.85108 -9.41000 -8.42530 -6.03085 1.28750 1.34285 1.42382 1.43821 1.58665 1.93401 2.21230 2.66349 2.89219 3.13751 3.24980 3.33007 3.53323 3.57107 3.68914 3.87531 3.95022 3.97213 4.10887 4.11333 4.20646 4.27409 4.30356 4.41100 4.44678 4.49151 4.52567 4.57043 4.62725 4.74871 4.76589 4.87429 4.87680 4.89876 4.94239 5.01337 5.04245 5.08713 5.15875 5.25053 5.28628 5.38926 5.51929 5.87587 5.89583 6.01115 6.33215 6.44752 6.57949 6.86562 7.01653 7.38212 7.93780 8.74874 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002025 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.213845 B =13824.641862 C =14568.365674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 H 0.086 0.914 4 C -0.143 4.143 5 C -0.139 4.139 6 C 0.066 3.934 7 H 0.124 0.876 8 C 0.530 3.470 9 O -0.582 6.582 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.104 4.104 13 H 0.100 0.900 14 C -0.142 4.142 15 C 0.082 3.918 16 H 0.067 0.933 17 N -0.669 5.669 18 C 0.060 3.940 19 C 0.451 3.549 20 O -0.610 6.610 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.058 0.942 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.962 3.038 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.232 1.232 30 C 0.112 3.888 31 O -0.387 6.387 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.355 0.645 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.060 0.940 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.452 28.687 -18.724 36.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.001 3.999 3 H 0.104 0.896 4 C -0.180 4.180 5 C -0.177 4.177 6 C 0.005 3.995 7 H 0.141 0.859 8 C 0.319 3.681 9 O -0.461 6.461 10 N -0.347 5.347 11 C -0.018 4.018 12 C -0.123 4.123 13 H 0.118 0.882 14 C -0.200 4.200 15 C -0.029 4.029 16 H 0.085 0.915 17 N -0.303 5.303 18 C -0.072 4.072 19 C 0.238 3.762 20 O -0.494 6.494 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.076 0.924 24 C -0.213 4.213 25 N -0.573 5.573 26 Si 0.782 3.218 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.155 1.155 30 C -0.011 4.011 31 O -0.306 6.306 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.332 27.650 -18.554 35.868 hybrid contribution 0.680 0.008 1.551 1.693 sum -12.653 27.658 -17.004 34.845 Atomic orbital electron populations 1.21967 0.93480 1.02284 1.03186 1.23102 0.95728 0.96447 0.84652 0.89586 1.23044 1.00699 0.97002 0.97250 1.23160 1.02648 0.99228 0.92642 1.23064 0.90651 0.92439 0.93318 0.85867 1.20529 0.79286 0.83065 0.85217 1.90716 1.49732 1.71898 1.33742 1.48658 1.24459 1.30973 1.30637 1.22558 0.86167 1.03472 0.89624 1.22293 0.95605 0.99605 0.94789 0.88220 1.21877 0.97082 0.97452 1.03543 1.22579 0.92868 0.89256 0.98161 0.91523 1.59912 1.30892 1.32313 1.07181 1.21688 1.01167 0.92993 0.91345 1.20868 0.82962 0.89791 0.82530 1.90541 1.58154 1.58924 1.41819 1.42055 1.55139 1.18676 1.07478 1.19013 1.36241 0.95912 0.94520 0.92386 1.26074 0.96227 0.97886 1.01065 1.69793 1.41739 1.21658 1.24114 0.85406 0.79169 0.79731 0.77495 1.18500 1.19861 1.15548 1.22353 0.94080 0.88826 0.95855 1.89032 1.39062 1.67647 1.34903 0.93239 0.92920 0.88553 0.87358 0.89246 0.91790 0.86053 0.89017 0.87502 0.92233 0.92840 0.89748 0.82386 0.90322 0.87756 0.77600 0.91140 0.92109 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.37 71.98 0.67 -1.15 16 2 C 0.06 0.72 4.05 30.96 0.13 0.84 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.14 -0.97 6.64 31.59 0.21 -0.76 16 5 C -0.14 -1.34 5.99 31.90 0.19 -1.15 16 6 C 0.07 1.07 3.05 30.53 0.09 1.16 16 7 H 0.12 1.25 7.86 -2.39 -0.02 1.23 16 8 C 0.53 12.98 7.30 87.65 0.64 13.62 16 9 O -0.58 -21.03 16.78 15.18 0.25 -20.78 16 10 N -0.61 -11.89 3.29 -810.10 -2.67 -14.55 16 11 C 0.10 1.07 5.25 86.53 0.45 1.53 16 12 C -0.10 -1.33 3.08 -9.90 -0.03 -1.36 16 13 H 0.10 1.36 7.94 -2.39 -0.02 1.34 16 14 C -0.14 -1.35 8.90 71.98 0.64 -0.71 16 15 C 0.08 1.63 2.92 46.01 0.13 1.77 16 16 H 0.07 1.28 7.55 -2.39 -0.02 1.27 16 17 N -0.67 -18.15 5.99 -489.92 -2.93 -21.08 16 18 C 0.06 1.83 6.03 85.55 0.52 2.35 16 19 C 0.45 20.13 7.82 87.65 0.69 20.82 16 20 O -0.61 -33.14 15.78 -3.05 -0.05 -33.18 16 21 N -0.59 -28.04 5.09 -307.00 -1.56 -29.60 16 22 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 23 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 25 N -0.93 -56.42 13.96 21.66 0.30 -56.12 16 26 Si 0.96 39.41 27.74 68.60 1.90 41.32 16 27 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 30 C 0.11 2.65 6.76 86.61 0.59 3.23 16 31 O -0.39 -8.58 10.48 -130.78 -1.37 -9.95 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.53 7.70 -2.39 -0.02 0.51 16 37 H 0.06 0.88 8.05 -2.39 -0.02 0.86 16 38 H 0.12 0.38 7.30 -2.39 -0.02 0.36 16 39 H 0.09 0.69 8.00 -2.39 -0.02 0.67 16 40 H 0.11 0.49 7.05 -2.39 -0.02 0.47 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.36 9.80 8.03 -89.70 -0.72 9.08 16 45 H 0.08 1.94 8.08 -2.38 -0.02 1.92 16 46 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 49 H 0.06 1.69 7.85 -2.39 -0.02 1.67 16 50 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -87.28 400.92 -0.24 -87.52 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -0.36 Total: 34.93 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.24 Total: 21.50 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -6.86 Total: -121.36 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -1.16 Total: -63.92 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.32 kcal Total: -87.28 -0.24 -87.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215594440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.917 kcal (2) G-P(sol) polarization free energy of solvation -87.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds