Wall clock time and date at job start Tue Mar 31 2020 23:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.30315 * 2 1 4 4 C 1.54388 * 110.43368 * 237.76792 * 2 1 3 5 5 N 1.48150 * 104.61634 * 264.95248 * 4 2 1 6 6 C 1.34772 * 127.83786 * 140.39054 * 5 4 2 7 7 O 1.21280 * 119.99783 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00086 * 359.97438 * 6 5 4 9 9 C 1.52995 * 110.45940 * 61.14718 * 8 6 5 10 10 C 1.54509 * 110.50972 * 183.90461 * 8 6 5 11 11 C 1.54475 * 104.06458 * 118.64397 * 10 8 6 12 12 O 1.44425 * 104.80238 * 336.02029 * 11 10 8 13 13 C 1.44422 * 105.27630 * 40.51300 * 12 11 10 14 14 C 1.48147 * 104.32000 * 320.40942 * 5 4 2 15 15 C 1.54287 * 110.34710 * 122.17603 * 2 1 3 16 16 H 1.09004 * 110.34081 * 359.97438 * 15 2 1 17 17 N 1.46895 * 110.34700 * 237.85268 * 15 2 1 18 18 C 1.46893 * 111.00318 * 154.99765 * 17 15 2 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 H 1.09000 * 109.47131 * 297.82086 * 1 2 3 31 31 H 1.08998 * 109.47654 * 57.82042 * 1 2 3 32 32 H 1.08999 * 109.47321 * 177.82523 * 1 2 3 33 33 H 1.09005 * 110.40597 * 23.73077 * 4 2 1 34 34 H 1.08992 * 110.40966 * 146.16088 * 4 2 1 35 35 H 1.09001 * 109.46941 * 60.70095 * 9 8 6 36 36 H 1.09000 * 109.47266 * 180.69880 * 9 8 6 37 37 H 1.09005 * 109.47492 * 300.70247 * 9 8 6 38 38 H 1.09006 * 110.50486 * 237.28709 * 10 8 6 39 39 H 1.09002 * 110.51048 * 359.97438 * 10 8 6 40 40 H 1.09005 * 110.36994 * 217.18896 * 11 10 8 41 41 H 1.09004 * 110.37532 * 94.85217 * 11 10 8 42 42 H 1.09004 * 110.37234 * 200.66008 * 13 12 11 43 43 H 1.08993 * 110.47014 * 78.36869 * 13 12 11 44 44 H 1.08996 * 110.40888 * 280.80003 * 14 5 4 45 45 H 1.09001 * 110.40139 * 158.37616 * 14 5 4 46 46 H 1.00908 * 110.99391 * 278.94927 * 17 15 2 47 47 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 48 48 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 49 49 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0830 -3.3101 -1.3529 7 8 2.3432 -4.3597 -0.8037 8 6 1.4973 -3.3110 -2.7414 9 6 2.4298 -2.5884 -3.7156 10 6 1.2298 -4.7572 -3.2152 11 6 -0.2973 -4.8009 -3.4439 12 8 -0.8263 -3.7517 -2.6042 13 6 0.1001 -2.6521 -2.7400 14 6 2.8824 -1.9400 0.6332 15 6 2.0664 -0.7703 1.2244 16 1 1.2399 -1.1484 1.8262 17 7 2.9311 0.0974 2.0351 18 6 2.9705 -0.3556 3.4319 19 6 3.8658 0.5564 4.2306 20 8 4.4172 1.4914 3.6894 21 7 4.0546 0.3324 5.5462 22 6 4.8686 1.1624 6.2729 23 1 5.3589 1.9954 5.7911 24 6 5.0628 0.9318 7.6293 25 7 4.4658 -0.0815 8.2157 26 14 6.1726 2.0622 8.6194 27 1 6.2119 1.6048 10.0316 28 1 7.5439 2.0324 8.0503 29 1 5.6435 3.4486 8.5633 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8697 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3252 -0.7879 -2.0205 34 1 2.9967 -0.3224 -1.5779 35 1 3.3908 -3.1017 -3.7471 36 1 1.9855 -2.5877 -4.7110 37 1 2.5774 -1.5609 -3.3829 38 1 1.7613 -4.9587 -4.1453 39 1 1.5216 -5.4714 -2.4452 40 1 -0.6988 -5.7680 -3.1412 41 1 -0.5301 -4.6031 -4.4903 42 1 0.0039 -1.9685 -1.8964 43 1 -0.0709 -2.1231 -3.6775 44 1 3.9373 -1.6733 0.5692 45 1 2.7525 -2.8378 1.2375 46 1 3.8604 0.1478 1.6449 47 1 3.3592 -1.3731 3.4731 48 1 1.9639 -0.3339 3.8494 49 1 3.6140 -0.4155 5.9790 50 1 4.6017 -0.2426 9.1625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216065559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:32 Heat of formation + Delta-G solvation = -107.299974 kcal Electronic energy + Delta-G solvation = -30445.657681 eV Core-core repulsion = 26279.928114 eV Total energy + Delta-G solvation = -4165.729567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25262 -39.43896 -38.29529 -37.76066 -34.90737 -34.08621 -33.70325 -32.49274 -31.23239 -30.39446 -28.76362 -27.07418 -26.68717 -26.24274 -24.44544 -23.60936 -22.77725 -21.58784 -20.37110 -19.35763 -19.17407 -17.91109 -17.29365 -16.76998 -16.47800 -16.21928 -15.92080 -15.64428 -15.44133 -14.87235 -14.56483 -14.44541 -14.16459 -13.93208 -13.83690 -13.64914 -13.48024 -13.33853 -13.16720 -13.04660 -12.74991 -12.33893 -12.32082 -12.06429 -11.96453 -11.80085 -11.67506 -11.57593 -11.46257 -11.20550 -11.14419 -11.01066 -10.93778 -10.88225 -10.44871 -10.36363 -10.22105 -9.84447 -9.51054 -9.03112 -8.49452 -8.12021 -7.97342 -6.42297 -3.83405 2.33784 2.59323 3.19635 3.25628 3.29775 3.52975 3.86107 3.88955 3.96798 4.09696 4.26193 4.30772 4.41938 4.47745 4.61449 4.71197 4.76293 4.78746 4.96303 5.01686 5.03203 5.09898 5.13317 5.14451 5.23065 5.25406 5.27286 5.32511 5.38992 5.47335 5.52582 5.55901 5.60561 5.65507 5.69720 5.78776 5.82267 5.91533 5.97787 6.00758 6.15385 6.28074 6.33375 7.13875 7.28112 7.54247 7.55298 7.88721 8.04783 8.59805 9.16636 9.53022 10.04015 10.75237 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.002053 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.420579 B =13638.320959 C =13885.686345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.104 0.896 4 C 0.094 3.906 5 N -0.616 5.616 6 C 0.550 3.450 7 O -0.535 6.535 8 C -0.112 4.112 9 C -0.141 4.141 10 C -0.144 4.144 11 C 0.045 3.955 12 O -0.368 6.368 13 C 0.050 3.950 14 C 0.075 3.925 15 C 0.079 3.921 16 H 0.091 0.909 17 N -0.654 5.654 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.284 1.284 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.351 0.649 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.393 0.607 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 -6.843 -25.189 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.123 0.877 4 C -0.029 4.029 5 N -0.350 5.350 6 C 0.338 3.662 7 O -0.411 6.411 8 C -0.116 4.116 9 C -0.198 4.198 10 C -0.182 4.182 11 C -0.031 4.031 12 O -0.287 6.287 13 C -0.027 4.027 14 C -0.050 4.050 15 C -0.033 4.033 16 H 0.109 0.891 17 N -0.285 5.285 18 C -0.085 4.085 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.721 -6.478 -24.831 27.442 hybrid contribution 1.100 -0.737 0.692 1.494 sum -8.621 -7.215 -24.139 26.629 Atomic orbital electron populations 1.21855 0.94123 1.01629 1.02524 1.22187 0.96294 1.00712 0.92734 0.87747 1.22817 1.01051 0.81524 0.97508 1.48814 1.63130 1.05514 1.17558 1.19791 0.77533 0.82066 0.86774 1.90690 1.52660 1.30554 1.67231 1.22115 0.97488 0.98490 0.93500 1.21938 0.99079 1.00668 0.98129 1.23085 0.96722 0.95233 1.03184 1.23459 0.92580 0.92385 0.94720 1.89180 1.47277 1.24725 1.67499 1.23738 0.85521 0.90455 1.02946 1.23297 0.97787 1.00556 0.83327 1.22639 0.96256 0.90139 0.94232 0.89056 1.60262 1.17232 1.49982 1.01064 1.21754 1.00856 0.96621 0.89251 1.19764 0.86395 0.88039 0.83233 1.90519 1.52953 1.32998 1.70412 1.41861 1.42784 1.28294 1.06947 1.19649 1.23090 1.09461 0.90802 0.87953 1.25277 0.98270 0.97361 0.97038 1.69606 1.43430 1.28839 1.12341 0.85910 0.80169 0.79958 0.78136 1.20979 1.19911 1.19868 0.91569 0.92386 0.92849 0.89904 0.90446 0.91468 0.90984 0.91202 0.89777 0.88168 0.88738 0.92080 0.88109 0.90955 0.90756 0.89797 0.82811 0.93674 0.89430 0.77425 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.53 37.16 0.32 -0.89 16 2 C -0.10 -0.92 3.44 -89.22 -0.31 -1.22 16 3 H 0.10 1.03 7.95 -51.92 -0.41 0.62 16 4 C 0.09 0.73 4.30 -2.41 -0.01 0.72 16 5 N -0.62 -6.52 3.23 -169.31 -0.55 -7.07 16 6 C 0.55 6.63 6.63 -10.99 -0.07 6.55 16 7 O -0.54 -8.57 15.56 5.56 0.09 -8.49 16 8 C -0.11 -0.96 0.69 -154.09 -0.11 -1.06 16 9 C -0.14 -0.84 8.08 37.16 0.30 -0.54 16 10 C -0.14 -1.19 6.32 -25.16 -0.16 -1.35 16 11 C 0.05 0.35 7.63 37.93 0.29 0.64 16 12 O -0.37 -3.83 11.65 -35.23 -0.41 -4.24 16 13 C 0.05 0.40 5.61 37.94 0.21 0.62 16 14 C 0.07 0.88 6.71 -2.41 -0.02 0.86 16 15 C 0.08 0.91 3.04 -66.32 -0.20 0.71 16 16 H 0.09 1.09 7.39 -51.93 -0.38 0.71 16 17 N -0.65 -9.68 5.85 -106.51 -0.62 -10.31 16 18 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 19 C 0.44 10.19 7.82 -10.98 -0.09 10.11 16 20 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 21 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.47 7.22 -51.93 -0.37 0.10 16 33 H 0.08 0.50 4.35 -51.93 -0.23 0.27 16 34 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.07 0.37 5.58 -51.93 -0.29 0.08 16 38 H 0.08 0.51 7.74 -51.93 -0.40 0.11 16 39 H 0.10 1.07 6.51 -51.93 -0.34 0.74 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.82 4.55 -51.93 -0.24 0.59 16 43 H 0.07 0.41 7.85 -51.93 -0.41 0.00 16 44 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 45 H 0.08 1.11 7.88 -51.93 -0.41 0.70 16 46 H 0.35 5.36 7.79 -39.29 -0.31 5.06 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -33.82 390.09 -7.80 -41.63 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.81 Total: 12.13 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.11 Total: 7.94 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.50 Total: -55.43 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.24 Total: -28.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.82 -7.80 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216065559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.674 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds