Wall clock time and date at job start Tue Mar 31 2020 23:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.30315 * 2 1 4 4 C 1.54388 * 110.43368 * 237.76792 * 2 1 3 5 5 N 1.48150 * 104.61634 * 264.95248 * 4 2 1 6 6 C 1.34772 * 127.83786 * 140.39054 * 5 4 2 7 7 O 1.21280 * 119.99783 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00086 * 359.97438 * 6 5 4 9 9 C 1.52995 * 110.45940 * 61.14718 * 8 6 5 10 10 C 1.54509 * 110.50972 * 183.90461 * 8 6 5 11 11 C 1.54475 * 104.06458 * 118.64397 * 10 8 6 12 12 O 1.44425 * 104.80238 * 336.02029 * 11 10 8 13 13 C 1.44422 * 105.27630 * 40.51300 * 12 11 10 14 14 C 1.48147 * 104.32000 * 320.40942 * 5 4 2 15 15 C 1.54287 * 110.34710 * 122.17603 * 2 1 3 16 16 H 1.09004 * 110.34081 * 359.97438 * 15 2 1 17 17 N 1.46895 * 110.34700 * 237.85268 * 15 2 1 18 18 C 1.46893 * 111.00318 * 154.99765 * 17 15 2 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 H 1.09000 * 109.47131 * 297.82086 * 1 2 3 31 31 H 1.08998 * 109.47654 * 57.82042 * 1 2 3 32 32 H 1.08999 * 109.47321 * 177.82523 * 1 2 3 33 33 H 1.09005 * 110.40597 * 23.73077 * 4 2 1 34 34 H 1.08992 * 110.40966 * 146.16088 * 4 2 1 35 35 H 1.09001 * 109.46941 * 60.70095 * 9 8 6 36 36 H 1.09000 * 109.47266 * 180.69880 * 9 8 6 37 37 H 1.09005 * 109.47492 * 300.70247 * 9 8 6 38 38 H 1.09006 * 110.50486 * 237.28709 * 10 8 6 39 39 H 1.09002 * 110.51048 * 359.97438 * 10 8 6 40 40 H 1.09005 * 110.36994 * 217.18896 * 11 10 8 41 41 H 1.09004 * 110.37532 * 94.85217 * 11 10 8 42 42 H 1.09004 * 110.37234 * 200.66008 * 13 12 11 43 43 H 1.08993 * 110.47014 * 78.36869 * 13 12 11 44 44 H 1.08996 * 110.40888 * 280.80003 * 14 5 4 45 45 H 1.09001 * 110.40139 * 158.37616 * 14 5 4 46 46 H 1.00908 * 110.99391 * 278.94927 * 17 15 2 47 47 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 48 48 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 49 49 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0830 -3.3101 -1.3529 7 8 2.3432 -4.3597 -0.8037 8 6 1.4973 -3.3110 -2.7414 9 6 2.4298 -2.5884 -3.7156 10 6 1.2298 -4.7572 -3.2152 11 6 -0.2973 -4.8009 -3.4439 12 8 -0.8263 -3.7517 -2.6042 13 6 0.1001 -2.6521 -2.7400 14 6 2.8824 -1.9400 0.6332 15 6 2.0664 -0.7703 1.2244 16 1 1.2399 -1.1484 1.8262 17 7 2.9311 0.0974 2.0351 18 6 2.9705 -0.3556 3.4319 19 6 3.8658 0.5564 4.2306 20 8 4.4172 1.4914 3.6894 21 7 4.0546 0.3324 5.5462 22 6 4.8686 1.1624 6.2729 23 1 5.3589 1.9954 5.7911 24 6 5.0628 0.9318 7.6293 25 7 4.4658 -0.0815 8.2157 26 14 6.1726 2.0622 8.6194 27 1 6.2119 1.6048 10.0316 28 1 7.5439 2.0324 8.0503 29 1 5.6435 3.4486 8.5633 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8697 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3252 -0.7879 -2.0205 34 1 2.9967 -0.3224 -1.5779 35 1 3.3908 -3.1017 -3.7471 36 1 1.9855 -2.5877 -4.7110 37 1 2.5774 -1.5609 -3.3829 38 1 1.7613 -4.9587 -4.1453 39 1 1.5216 -5.4714 -2.4452 40 1 -0.6988 -5.7680 -3.1412 41 1 -0.5301 -4.6031 -4.4903 42 1 0.0039 -1.9685 -1.8964 43 1 -0.0709 -2.1231 -3.6775 44 1 3.9373 -1.6733 0.5692 45 1 2.7525 -2.8378 1.2375 46 1 3.8604 0.1478 1.6449 47 1 3.3592 -1.3731 3.4731 48 1 1.9639 -0.3339 3.8494 49 1 3.6140 -0.4155 5.9790 50 1 4.6017 -0.2426 9.1625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216065559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:32 Heat of formation + Delta-G solvation = -133.599832 kcal Electronic energy + Delta-G solvation = -30446.798129 eV Core-core repulsion = 26279.928114 eV Total energy + Delta-G solvation = -4166.870015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03685 -40.43303 -39.83572 -38.82673 -36.25836 -35.65061 -34.68367 -33.38374 -33.21602 -31.09299 -29.82157 -27.80959 -27.69576 -27.24317 -25.98870 -24.51283 -23.61383 -22.34460 -21.42636 -20.89603 -20.07905 -19.90094 -18.20851 -17.69154 -17.47432 -17.24692 -16.92318 -16.78163 -16.46051 -16.33195 -15.87291 -15.59050 -15.43490 -15.28545 -14.88539 -14.54452 -14.31611 -14.17366 -14.01105 -13.96418 -13.75538 -13.49969 -13.39096 -13.30098 -13.06587 -12.85583 -12.83627 -12.59797 -12.46070 -12.44021 -12.17137 -12.11933 -12.00325 -11.85596 -11.71253 -11.57862 -11.50459 -11.09007 -10.61635 -10.35805 -10.03054 -9.93886 -9.36584 -8.47173 -5.96281 1.39569 1.41430 1.45498 1.52582 1.75156 2.03870 2.28424 2.84991 2.94522 3.19638 3.20559 3.35307 3.49625 3.54502 3.71484 3.84575 3.91416 3.97755 4.13908 4.16480 4.20546 4.27357 4.30412 4.40431 4.47085 4.47993 4.53506 4.58071 4.61892 4.69380 4.73699 4.78791 4.80194 4.81020 4.86242 4.93474 4.94460 5.12480 5.17133 5.20047 5.28299 5.39824 5.42872 5.76257 5.87305 6.06540 6.32850 6.43828 6.58329 6.98857 7.11202 7.54840 8.09253 8.69967 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.002053 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.420579 B =13638.320959 C =13885.686345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.104 0.896 4 C 0.096 3.904 5 N -0.613 5.613 6 C 0.540 3.460 7 O -0.587 6.587 8 C -0.109 4.109 9 C -0.137 4.137 10 C -0.146 4.146 11 C 0.044 3.956 12 O -0.400 6.400 13 C 0.050 3.950 14 C 0.075 3.925 15 C 0.084 3.916 16 H 0.088 0.912 17 N -0.658 5.658 18 C 0.062 3.938 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.348 0.652 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -5.963 -27.420 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.122 0.878 4 C -0.025 4.025 5 N -0.346 5.346 6 C 0.330 3.670 7 O -0.467 6.467 8 C -0.112 4.112 9 C -0.195 4.195 10 C -0.184 4.184 11 C -0.032 4.032 12 O -0.319 6.319 13 C -0.027 4.027 14 C -0.050 4.050 15 C -0.027 4.027 16 H 0.106 0.894 17 N -0.290 5.290 18 C -0.071 4.071 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.168 0.832 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.482 -5.590 -27.084 29.574 hybrid contribution 1.308 -1.039 1.356 2.151 sum -9.174 -6.628 -25.728 28.108 Atomic orbital electron populations 1.21829 0.93189 1.01513 1.03186 1.22156 0.96955 1.00367 0.91882 0.87821 1.23009 1.02599 0.79502 0.97436 1.48884 1.62288 1.06492 1.16936 1.20601 0.76836 0.81482 0.88046 1.90664 1.54915 1.32421 1.68745 1.22184 0.98324 0.99190 0.91527 1.21977 0.98188 1.00562 0.98725 1.23091 0.97650 0.94428 1.03185 1.23609 0.91798 0.91938 0.95882 1.89143 1.48239 1.25952 1.68548 1.23903 0.84391 0.89933 1.04465 1.23165 0.97993 0.99623 0.84194 1.22658 0.95332 0.90028 0.94720 0.89398 1.60308 1.17493 1.50983 1.00203 1.21604 1.00038 0.95622 0.89804 1.20772 0.85806 0.87922 0.82789 1.90487 1.54346 1.34772 1.71021 1.41950 1.43049 1.28343 1.07771 1.19646 1.24729 1.10091 0.91841 0.90081 1.26082 0.99266 0.98671 0.97451 1.69675 1.44031 1.29715 1.12816 0.84970 0.78217 0.78050 0.76999 1.19642 1.19616 1.19568 0.92624 0.89926 0.93452 0.87269 0.88875 0.92283 0.88180 0.90220 0.87352 0.91499 0.88936 0.89173 0.88564 0.87573 0.90738 0.91943 0.83151 0.92073 0.87834 0.77076 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.53 71.98 0.61 -1.42 16 2 C -0.09 -1.55 3.44 -9.89 -0.03 -1.59 16 3 H 0.10 1.82 7.95 -2.38 -0.02 1.80 16 4 C 0.10 1.26 4.30 86.53 0.37 1.63 16 5 N -0.61 -12.48 3.23 -807.96 -2.61 -15.09 16 6 C 0.54 12.90 6.63 87.66 0.58 13.48 16 7 O -0.59 -19.73 15.56 -3.03 -0.05 -19.77 16 8 C -0.11 -1.65 0.69 -51.91 -0.04 -1.68 16 9 C -0.14 -1.18 8.08 71.98 0.58 -0.59 16 10 C -0.15 -2.23 6.32 31.61 0.20 -2.03 16 11 C 0.04 0.59 7.63 72.48 0.55 1.15 16 12 O -0.40 -7.66 11.65 -148.98 -1.74 -9.40 16 13 C 0.05 0.65 5.61 72.49 0.41 1.06 16 14 C 0.08 1.78 6.71 86.53 0.58 2.36 16 15 C 0.08 1.88 3.04 45.82 0.14 2.02 16 16 H 0.09 2.06 7.39 -2.38 -0.02 2.04 16 17 N -0.66 -19.22 5.85 -490.90 -2.87 -22.09 16 18 C 0.06 2.09 6.02 85.56 0.51 2.60 16 19 C 0.44 20.69 7.82 87.66 0.69 21.37 16 20 O -0.62 -33.59 15.78 -3.05 -0.05 -33.64 16 21 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 22 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 23 H 0.08 4.87 7.16 -2.92 -0.02 4.85 16 24 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 25 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 26 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.76 7.22 -2.39 -0.02 0.74 16 33 H 0.11 0.89 4.35 -2.38 -0.01 0.88 16 34 H 0.09 1.01 8.05 -2.39 -0.02 0.99 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 0.34 8.12 -2.39 -0.02 0.32 16 37 H 0.08 0.52 5.58 -2.38 -0.01 0.51 16 38 H 0.11 1.07 7.74 -2.38 -0.02 1.05 16 39 H 0.07 1.50 6.51 -2.39 -0.02 1.48 16 40 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.10 1.31 4.55 -2.39 -0.01 1.30 16 43 H 0.11 0.69 7.85 -2.39 -0.02 0.68 16 44 H 0.07 1.75 7.55 -2.39 -0.02 1.73 16 45 H 0.06 1.74 7.88 -2.39 -0.02 1.72 16 46 H 0.35 10.57 7.79 -89.69 -0.70 9.87 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.10 3.21 8.07 -2.39 -0.02 3.19 16 49 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -76.21 390.09 -0.64 -76.85 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.45 Total: 39.37 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.44 Total: 19.87 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -6.82 Total: -118.36 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -1.83 Total: -62.81 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.21 -0.64 -76.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216065559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.750 kcal (2) G-P(sol) polarization free energy of solvation -76.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds