Wall clock time and date at job start Tue Mar 31 2020 23:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 110.91529 * 2 1 4 4 C 1.55119 * 111.16617 * 236.07140 * 2 1 3 5 5 N 1.47427 * 104.94299 * 205.13254 * 4 2 1 6 6 C 1.34782 * 125.64649 * 204.03596 * 5 4 2 7 7 O 1.21280 * 120.00054 * 179.97438 * 6 5 4 8 8 C 1.50695 * 119.99967 * 359.96255 * 6 5 4 9 9 C 1.53007 * 110.45897 * 300.69722 * 8 6 5 10 10 C 1.54515 * 110.51151 * 178.09354 * 8 6 5 11 11 C 1.54790 * 103.91184 * 241.38688 * 10 8 6 12 12 O 1.44429 * 104.80529 * 335.91740 * 11 10 8 13 13 C 1.44422 * 105.27618 * 40.58530 * 12 11 10 14 14 C 1.47016 * 108.70402 * 24.00049 * 5 4 2 15 15 C 1.54322 * 107.27369 * 358.94296 * 14 5 4 16 16 H 1.09000 * 110.72192 * 96.34270 * 15 14 5 17 17 N 1.46893 * 110.72242 * 219.44270 * 15 14 5 18 18 C 1.46903 * 111.00304 * 271.15451 * 17 15 14 19 19 C 1.50696 * 109.47177 * 179.97438 * 18 17 15 20 20 O 1.21292 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99627 * 179.97438 * 19 18 17 22 22 C 1.37090 * 119.99714 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00232 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99992 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00236 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00316 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00267 * 26 24 22 29 29 H 1.48504 * 109.46913 * 150.00066 * 26 24 22 30 30 H 1.08997 * 109.47556 * 296.10312 * 1 2 3 31 31 H 1.09012 * 109.47070 * 56.09689 * 1 2 3 32 32 H 1.08998 * 109.47543 * 176.09568 * 1 2 3 33 33 H 1.09003 * 110.41824 * 86.20289 * 4 2 1 34 34 H 1.08998 * 110.29955 * 324.00331 * 4 2 1 35 35 H 1.09005 * 109.46743 * 59.30091 * 9 8 6 36 36 H 1.08999 * 109.47424 * 179.30195 * 9 8 6 37 37 H 1.08997 * 109.46888 * 299.30451 * 9 8 6 38 38 H 1.08995 * 110.50875 * 0.02562 * 10 8 6 39 39 H 1.09004 * 110.50678 * 122.70595 * 10 8 6 40 40 H 1.09002 * 110.31240 * 217.12078 * 11 10 8 41 41 H 1.08998 * 110.52966 * 94.82890 * 11 10 8 42 42 H 1.09000 * 110.37291 * 200.65788 * 13 12 11 43 43 H 1.09002 * 110.46565 * 78.36530 * 13 12 11 44 44 H 1.09001 * 109.88377 * 239.52074 * 14 5 4 45 45 H 1.09010 * 109.87935 * 118.35728 * 14 5 4 46 46 H 1.00899 * 111.00478 * 147.19630 * 17 15 14 47 47 H 1.09005 * 109.46883 * 59.99694 * 18 17 15 48 48 H 1.09002 * 109.46817 * 300.00144 * 18 17 15 49 49 H 0.96999 * 120.00048 * 0.02562 * 21 19 18 50 50 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0900 -0.8074 -1.2002 5 7 3.4298 -1.2473 -0.7704 6 6 4.4516 -1.5677 -1.5889 7 8 5.5151 -1.9180 -1.1229 8 6 4.2725 -1.4907 -3.0832 9 6 3.1386 -2.4137 -3.5342 10 6 5.5883 -1.8568 -3.8058 11 6 5.9492 -0.5746 -4.5941 12 8 4.6922 0.1133 -4.7753 13 6 3.9926 -0.0358 -3.5207 14 6 3.4671 -1.2780 0.6990 15 6 2.0861 -0.8079 1.2023 16 1 1.4450 -1.6613 1.4230 17 7 2.2289 0.0519 2.3847 18 6 2.2279 -0.7453 3.6186 19 6 2.3765 0.1689 4.8074 20 8 2.4732 1.3667 4.6431 21 7 2.4009 -0.3446 6.0534 22 6 2.5356 0.4871 7.1349 23 1 2.6217 1.5536 6.9885 24 6 2.5613 -0.0422 8.4194 25 7 2.6909 0.7549 9.4561 26 14 2.4116 -1.8870 8.6726 27 1 0.9796 -2.2520 8.8184 28 1 2.9862 -2.5956 7.5009 29 1 3.1501 -2.2797 9.8996 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1642 -0.1732 -2.0837 34 1 1.4553 -1.6694 -1.4053 35 1 2.2124 -2.1194 -3.0403 36 1 3.0148 -2.3363 -4.6144 37 1 3.3806 -3.4429 -3.2690 38 1 6.3682 -2.0939 -3.0821 39 1 5.4304 -2.6939 -4.4859 40 1 6.3826 -0.8337 -5.5602 41 1 6.6411 0.0437 -4.0223 42 1 2.9229 0.1188 -3.6621 43 1 4.3820 0.6642 -2.7816 44 1 4.2434 -0.6056 1.0642 45 1 3.6612 -2.2937 1.0438 46 1 1.5070 0.7565 2.4089 47 1 3.0592 -1.4500 3.5965 48 1 1.2889 -1.2933 3.6963 49 1 2.3232 -1.3025 6.1848 50 1 2.7084 0.3853 10.3528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216065562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:36 Heat of formation + Delta-G solvation = -102.737306 kcal Electronic energy + Delta-G solvation = -30295.764133 eV Core-core repulsion = 26130.232418 eV Total energy + Delta-G solvation = -4165.531715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25665 -39.48492 -38.48554 -37.86252 -35.04727 -34.06468 -33.75080 -32.68397 -31.67712 -30.41846 -28.94335 -27.15359 -26.84356 -26.53378 -24.25256 -23.38005 -22.75781 -21.41150 -20.52901 -19.44491 -19.28460 -18.34124 -17.55598 -17.10114 -16.53747 -16.00290 -15.85535 -15.65596 -15.33581 -14.97078 -14.81053 -14.68659 -14.48816 -14.16326 -13.81418 -13.56081 -13.40227 -13.32511 -13.10500 -13.04694 -12.77666 -12.54534 -12.45646 -12.35793 -12.19495 -12.07474 -11.78077 -11.70772 -11.55586 -11.37116 -11.23013 -11.17359 -11.13002 -10.79173 -10.61378 -10.17875 -9.99966 -9.98564 -9.59800 -8.91462 -8.65795 -8.30781 -8.20006 -6.33134 -3.84718 2.30003 2.56737 3.01401 3.04760 3.13711 3.50045 3.70162 3.86322 3.94073 4.04863 4.08462 4.09828 4.29204 4.35799 4.55329 4.61814 4.74481 4.77958 4.82656 4.92005 4.98059 5.03162 5.10709 5.12706 5.17863 5.19395 5.26726 5.31962 5.36822 5.41160 5.47342 5.51028 5.53404 5.64644 5.65426 5.66537 5.72943 5.77927 5.85638 5.88064 5.94935 6.04144 6.31522 6.98452 7.19226 7.44558 7.55516 7.85082 8.11866 8.56982 8.92539 9.39875 9.79318 10.79871 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002173 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.208420 B =12885.046229 C =13284.702170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.099 0.901 4 C 0.098 3.902 5 N -0.612 5.612 6 C 0.541 3.459 7 O -0.532 6.532 8 C -0.112 4.112 9 C -0.141 4.141 10 C -0.143 4.143 11 C 0.044 3.956 12 O -0.370 6.370 13 C 0.059 3.941 14 C 0.113 3.887 15 C 0.079 3.921 16 H 0.062 0.938 17 N -0.656 5.656 18 C 0.046 3.954 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.276 1.276 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.357 0.643 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -8.928 -28.648 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.118 0.882 4 C -0.025 4.025 5 N -0.346 5.346 6 C 0.329 3.671 7 O -0.408 6.408 8 C -0.116 4.116 9 C -0.199 4.199 10 C -0.181 4.181 11 C -0.033 4.033 12 O -0.288 6.288 13 C -0.018 4.018 14 C -0.010 4.010 15 C -0.032 4.032 16 H 0.080 0.920 17 N -0.290 5.290 18 C -0.086 4.086 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.201 1.201 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.178 0.822 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.874 -8.146 -28.524 29.723 hybrid contribution -0.947 -1.906 0.834 2.286 sum -2.822 -10.052 -27.690 29.593 Atomic orbital electron populations 1.21746 0.93316 1.02279 1.02873 1.22615 0.96310 1.00472 0.93388 0.88238 1.22693 0.83439 0.98318 0.98037 1.48313 1.12262 1.66742 1.07246 1.19890 0.82622 0.76833 0.87802 1.90706 1.25914 1.47189 1.77003 1.22116 0.98831 0.98470 0.92135 1.21971 0.96581 0.98867 1.02439 1.23106 0.96406 0.98848 0.99727 1.23533 0.86935 0.91957 1.00847 1.89136 1.30485 1.76205 1.32975 1.23527 0.98421 0.93044 0.86850 1.22062 0.98699 1.01710 0.78489 1.22592 0.94607 0.95277 0.90714 0.91976 1.59977 1.55227 1.14334 0.99486 1.21797 1.01093 0.95799 0.89952 1.19652 0.84262 0.89135 0.83449 1.90571 1.53673 1.15387 1.84996 1.42206 1.66335 1.08354 1.05995 1.19427 1.47462 0.93615 0.82892 0.86258 1.25050 0.97608 0.98311 0.95210 1.69622 1.48867 1.34909 0.98616 0.86671 0.78912 0.85094 0.78715 1.19659 1.19453 1.20134 0.91619 0.91809 0.92296 0.90114 0.90737 0.91292 0.90783 0.91728 0.88004 0.89905 0.88697 0.91852 0.88118 0.91632 0.89514 0.91570 0.82200 0.89414 0.93494 0.79683 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.31 37.15 0.35 -0.56 16 2 C -0.11 -0.86 3.06 -88.36 -0.27 -1.13 16 3 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 4 C 0.10 0.68 4.55 -2.41 -0.01 0.67 16 5 N -0.61 -6.25 3.33 -170.39 -0.57 -6.82 16 6 C 0.54 6.25 6.50 -10.99 -0.07 6.18 16 7 O -0.53 -8.23 15.61 5.56 0.09 -8.14 16 8 C -0.11 -0.94 0.69 -154.09 -0.11 -1.05 16 9 C -0.14 -0.87 8.08 37.16 0.30 -0.57 16 10 C -0.14 -1.18 6.34 -24.99 -0.16 -1.34 16 11 C 0.04 0.35 7.64 38.10 0.29 0.64 16 12 O -0.37 -3.49 11.65 -35.23 -0.41 -3.90 16 13 C 0.06 0.47 5.44 37.94 0.21 0.68 16 14 C 0.11 1.34 6.61 -3.07 -0.02 1.32 16 15 C 0.08 0.82 2.72 -65.88 -0.18 0.64 16 16 H 0.06 0.59 7.75 -51.93 -0.40 0.18 16 17 N -0.66 -9.26 5.93 -106.05 -0.63 -9.89 16 18 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 19 C 0.45 9.94 7.82 -10.98 -0.09 9.86 16 20 O -0.56 -14.85 15.78 5.55 0.09 -14.76 16 21 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 22 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 26 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.08 0.45 4.90 -51.93 -0.25 0.19 16 34 H 0.07 0.41 6.95 -51.93 -0.36 0.05 16 35 H 0.07 0.35 5.01 -51.93 -0.26 0.09 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.03 6.50 -51.93 -0.34 0.69 16 39 H 0.08 0.56 7.73 -51.93 -0.40 0.15 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.60 6.36 -51.93 -0.33 0.27 16 43 H 0.07 0.59 7.86 -51.93 -0.41 0.18 16 44 H 0.09 1.26 8.03 -51.93 -0.42 0.85 16 45 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 46 H 0.36 5.11 8.16 -39.29 -0.32 4.79 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 49 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.83 390.42 -7.51 -42.33 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.93 Total: 11.21 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.04 Total: 8.33 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.48 Total: -55.48 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.24 Total: -26.81 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.83 -7.51 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216065562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.403 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds