Wall clock time and date at job start Tue Mar 31 2020 23:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 110.91529 * 2 1 4 4 C 1.55119 * 111.16617 * 236.07140 * 2 1 3 5 5 N 1.47427 * 104.94299 * 205.13254 * 4 2 1 6 6 C 1.34782 * 125.64649 * 204.03596 * 5 4 2 7 7 O 1.21280 * 120.00054 * 179.97438 * 6 5 4 8 8 C 1.50695 * 119.99967 * 359.96255 * 6 5 4 9 9 C 1.53007 * 110.45897 * 300.69722 * 8 6 5 10 10 C 1.54515 * 110.51151 * 178.09354 * 8 6 5 11 11 C 1.54790 * 103.91184 * 241.38688 * 10 8 6 12 12 O 1.44429 * 104.80529 * 335.91740 * 11 10 8 13 13 C 1.44422 * 105.27618 * 40.58530 * 12 11 10 14 14 C 1.47016 * 108.70402 * 24.00049 * 5 4 2 15 15 C 1.54322 * 107.27369 * 358.94296 * 14 5 4 16 16 H 1.09000 * 110.72192 * 96.34270 * 15 14 5 17 17 N 1.46893 * 110.72242 * 219.44270 * 15 14 5 18 18 C 1.46903 * 111.00304 * 271.15451 * 17 15 14 19 19 C 1.50696 * 109.47177 * 179.97438 * 18 17 15 20 20 O 1.21292 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99627 * 179.97438 * 19 18 17 22 22 C 1.37090 * 119.99714 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00232 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99992 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00236 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00316 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00267 * 26 24 22 29 29 H 1.48504 * 109.46913 * 150.00066 * 26 24 22 30 30 H 1.08997 * 109.47556 * 296.10312 * 1 2 3 31 31 H 1.09012 * 109.47070 * 56.09689 * 1 2 3 32 32 H 1.08998 * 109.47543 * 176.09568 * 1 2 3 33 33 H 1.09003 * 110.41824 * 86.20289 * 4 2 1 34 34 H 1.08998 * 110.29955 * 324.00331 * 4 2 1 35 35 H 1.09005 * 109.46743 * 59.30091 * 9 8 6 36 36 H 1.08999 * 109.47424 * 179.30195 * 9 8 6 37 37 H 1.08997 * 109.46888 * 299.30451 * 9 8 6 38 38 H 1.08995 * 110.50875 * 0.02562 * 10 8 6 39 39 H 1.09004 * 110.50678 * 122.70595 * 10 8 6 40 40 H 1.09002 * 110.31240 * 217.12078 * 11 10 8 41 41 H 1.08998 * 110.52966 * 94.82890 * 11 10 8 42 42 H 1.09000 * 110.37291 * 200.65788 * 13 12 11 43 43 H 1.09002 * 110.46565 * 78.36530 * 13 12 11 44 44 H 1.09001 * 109.88377 * 239.52074 * 14 5 4 45 45 H 1.09010 * 109.87935 * 118.35728 * 14 5 4 46 46 H 1.00899 * 111.00478 * 147.19630 * 17 15 14 47 47 H 1.09005 * 109.46883 * 59.99694 * 18 17 15 48 48 H 1.09002 * 109.46817 * 300.00144 * 18 17 15 49 49 H 0.96999 * 120.00048 * 0.02562 * 21 19 18 50 50 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0900 -0.8074 -1.2002 5 7 3.4298 -1.2473 -0.7704 6 6 4.4516 -1.5677 -1.5889 7 8 5.5151 -1.9180 -1.1229 8 6 4.2725 -1.4907 -3.0832 9 6 3.1386 -2.4137 -3.5342 10 6 5.5883 -1.8568 -3.8058 11 6 5.9492 -0.5746 -4.5941 12 8 4.6922 0.1133 -4.7753 13 6 3.9926 -0.0358 -3.5207 14 6 3.4671 -1.2780 0.6990 15 6 2.0861 -0.8079 1.2023 16 1 1.4450 -1.6613 1.4230 17 7 2.2289 0.0519 2.3847 18 6 2.2279 -0.7453 3.6186 19 6 2.3765 0.1689 4.8074 20 8 2.4732 1.3667 4.6431 21 7 2.4009 -0.3446 6.0534 22 6 2.5356 0.4871 7.1349 23 1 2.6217 1.5536 6.9885 24 6 2.5613 -0.0422 8.4194 25 7 2.6909 0.7549 9.4561 26 14 2.4116 -1.8870 8.6726 27 1 0.9796 -2.2520 8.8184 28 1 2.9862 -2.5956 7.5009 29 1 3.1501 -2.2797 9.8996 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1642 -0.1732 -2.0837 34 1 1.4553 -1.6694 -1.4053 35 1 2.2124 -2.1194 -3.0403 36 1 3.0148 -2.3363 -4.6144 37 1 3.3806 -3.4429 -3.2690 38 1 6.3682 -2.0939 -3.0821 39 1 5.4304 -2.6939 -4.4859 40 1 6.3826 -0.8337 -5.5602 41 1 6.6411 0.0437 -4.0223 42 1 2.9229 0.1188 -3.6621 43 1 4.3820 0.6642 -2.7816 44 1 4.2434 -0.6056 1.0642 45 1 3.6612 -2.2937 1.0438 46 1 1.5070 0.7565 2.4089 47 1 3.0592 -1.4500 3.5965 48 1 1.2889 -1.2933 3.6963 49 1 2.3232 -1.3025 6.1848 50 1 2.7084 0.3853 10.3528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216065562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:35 Heat of formation + Delta-G solvation = -131.396494 kcal Electronic energy + Delta-G solvation = -30297.006888 eV Core-core repulsion = 26130.232418 eV Total energy + Delta-G solvation = -4166.774471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02151 -40.49553 -39.93216 -38.85277 -36.31021 -35.73008 -34.60690 -33.77448 -33.41349 -31.11554 -29.91474 -28.09444 -27.61683 -27.41976 -25.82914 -24.19989 -23.53713 -22.16855 -21.40600 -21.19183 -20.28442 -20.03014 -18.37470 -17.96235 -17.58573 -17.15331 -16.87045 -16.81026 -16.51860 -16.20486 -15.84685 -15.65740 -15.42661 -15.08579 -14.92193 -14.87558 -14.46094 -14.37038 -14.11477 -13.87980 -13.83349 -13.69407 -13.42777 -13.29215 -13.09703 -12.95629 -12.93368 -12.73823 -12.43284 -12.38448 -12.17846 -12.06933 -11.99444 -11.84315 -11.74875 -11.52537 -11.49035 -10.88439 -10.83370 -10.45670 -10.26395 -9.76398 -9.43278 -8.42486 -6.03471 1.29564 1.34257 1.43581 1.44120 1.76469 1.93843 2.21883 2.67874 2.88639 3.13975 3.19402 3.28696 3.43192 3.44260 3.67801 3.69793 3.90860 4.05446 4.11166 4.13591 4.16311 4.18820 4.26719 4.40492 4.44375 4.52011 4.53174 4.53973 4.61177 4.71660 4.74325 4.79240 4.84037 4.86888 4.89563 4.94928 5.00102 5.03359 5.17988 5.22472 5.25214 5.42247 5.51656 5.67346 5.88885 6.01904 6.32442 6.41639 6.58084 6.86631 6.98908 7.38140 7.94437 8.75092 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002173 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.208420 B =12885.046229 C =13284.702170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.083 0.917 4 C 0.097 3.903 5 N -0.610 5.610 6 C 0.534 3.466 7 O -0.583 6.583 8 C -0.107 4.107 9 C -0.137 4.137 10 C -0.144 4.144 11 C 0.042 3.958 12 O -0.381 6.381 13 C 0.059 3.941 14 C 0.113 3.887 15 C 0.085 3.915 16 H 0.087 0.913 17 N -0.677 5.677 18 C 0.062 3.938 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.254 1.254 28 H -0.233 1.233 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.053 0.947 42 H 0.129 0.871 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.354 0.646 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -12.388 -31.344 34.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.024 4.024 5 N -0.342 5.342 6 C 0.323 3.677 7 O -0.463 6.463 8 C -0.110 4.110 9 C -0.194 4.194 10 C -0.182 4.182 11 C -0.034 4.034 12 O -0.300 6.300 13 C -0.018 4.018 14 C -0.011 4.011 15 C -0.025 4.025 16 H 0.105 0.895 17 N -0.311 5.311 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.575 5.575 26 Si 0.785 3.215 27 H -0.178 1.178 28 H -0.156 1.156 29 H -0.202 1.202 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.146 0.854 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.175 0.825 47 H 0.123 0.877 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.223 -11.606 -31.263 33.614 hybrid contribution -0.172 -0.655 1.636 1.771 sum -4.395 -12.261 -29.626 32.363 Atomic orbital electron populations 1.21726 0.91414 1.03527 1.03028 1.22581 0.97691 0.99364 0.92502 0.89888 1.22966 0.81781 0.99584 0.98088 1.48391 1.13397 1.65926 1.06480 1.20539 0.82021 0.75901 0.89221 1.90680 1.27924 1.49588 1.78086 1.22147 0.99905 0.99398 0.89585 1.21991 0.95987 0.97960 1.03461 1.23109 0.95860 0.99686 0.99522 1.23617 0.86504 0.91501 1.01804 1.89124 1.30942 1.76477 1.33409 1.23606 0.99750 0.92303 0.86143 1.21951 0.98661 1.00654 0.79831 1.22633 0.94053 0.95875 0.89944 0.89487 1.59884 1.55850 1.15266 1.00145 1.21699 1.03711 0.94386 0.87278 1.20965 0.81294 0.89461 0.84641 1.90549 1.55024 1.18285 1.85962 1.42040 1.67099 1.08754 1.05378 1.18999 1.49656 0.91782 0.85324 0.92670 1.26135 0.96140 1.05277 0.93934 1.69807 1.49936 1.38236 0.99479 0.85363 0.79928 0.76497 0.79721 1.17800 1.15640 1.20174 0.92822 0.90183 0.90658 0.88266 0.87824 0.89636 0.89333 0.92000 0.90420 0.88027 0.86584 0.92882 0.85377 0.93307 0.93244 0.91795 0.82476 0.87656 0.89560 0.77471 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.31 71.98 0.67 -0.56 16 2 C -0.10 -1.35 3.06 -9.33 -0.03 -1.38 16 3 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 4 C 0.10 1.02 4.55 86.93 0.40 1.41 16 5 N -0.61 -11.58 3.33 -811.37 -2.70 -14.28 16 6 C 0.53 12.08 6.50 87.65 0.57 12.65 16 7 O -0.58 -18.73 15.61 -3.03 -0.05 -18.78 16 8 C -0.11 -1.62 0.69 -51.91 -0.04 -1.65 16 9 C -0.14 -1.21 8.08 71.98 0.58 -0.63 16 10 C -0.14 -2.26 6.34 31.72 0.20 -2.06 16 11 C 0.04 0.63 7.64 72.59 0.55 1.18 16 12 O -0.38 -6.52 11.65 -148.98 -1.74 -8.26 16 13 C 0.06 0.84 5.44 72.49 0.39 1.23 16 14 C 0.11 2.59 6.61 86.73 0.57 3.16 16 15 C 0.09 1.57 2.72 46.11 0.13 1.70 16 16 H 0.09 1.25 7.75 -2.39 -0.02 1.23 16 17 N -0.68 -18.39 5.93 -489.45 -2.90 -21.29 16 18 C 0.06 1.79 6.03 85.56 0.52 2.30 16 19 C 0.45 19.94 7.82 87.65 0.69 20.62 16 20 O -0.61 -33.73 15.78 -3.07 -0.05 -33.78 16 21 N -0.59 -27.70 5.09 -306.98 -1.56 -29.27 16 22 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 23 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 25 N -0.93 -56.50 13.96 21.66 0.30 -56.19 16 26 Si 0.97 38.74 27.74 68.60 1.90 40.65 16 27 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 28 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 29 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.45 8.08 -2.39 -0.02 0.44 16 33 H 0.10 0.70 4.90 -2.39 -0.01 0.69 16 34 H 0.10 0.58 6.95 -2.39 -0.02 0.56 16 35 H 0.08 0.46 5.01 -2.38 -0.01 0.45 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.64 6.50 -2.39 -0.02 1.62 16 39 H 0.10 1.17 7.73 -2.38 -0.02 1.16 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 1.06 6.36 -2.39 -0.02 1.05 16 43 H 0.05 0.85 7.86 -2.39 -0.02 0.83 16 44 H 0.05 1.50 8.03 -2.39 -0.02 1.48 16 45 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.35 9.95 8.16 -89.69 -0.73 9.22 16 47 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 48 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 49 H 0.39 15.06 5.76 -92.71 -0.53 14.53 16 50 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.46 390.42 -0.62 -85.07 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.35 Total: 36.99 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.52 Total: 19.14 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.86 Total: -121.03 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -1.83 Total: -60.82 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.65 kcal Total: -84.46 -0.62 -85.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216065562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.322 kcal (2) G-P(sol) polarization free energy of solvation -84.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds