Wall clock time and date at job start Tue Mar 31 2020 23:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99722 * 2 1 4 4 O 1.42899 * 109.47434 * 135.00292 * 3 2 1 5 5 C 1.42901 * 114.00116 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47188 * 329.99916 * 5 4 3 7 7 C 1.53003 * 109.47180 * 89.99895 * 5 4 3 8 8 C 1.50701 * 109.46973 * 209.99556 * 5 4 3 9 9 O 1.21288 * 119.99939 * 344.18901 * 8 5 4 10 10 N 1.34770 * 120.00123 * 164.18215 * 8 5 4 11 11 C 1.47486 * 127.03487 * 4.68591 * 10 8 5 12 12 C 1.53999 * 107.08988 * 154.51344 * 11 10 8 13 13 H 1.08992 * 110.33083 * 120.29942 * 12 11 10 14 14 C 1.53004 * 110.32435 * 242.41382 * 12 11 10 15 15 C 1.54616 * 105.04313 * 1.30152 * 12 11 10 16 16 H 1.08997 * 110.74200 * 263.33544 * 15 12 11 17 17 N 1.46896 * 110.74200 * 140.18981 * 15 12 11 18 18 C 1.46900 * 111.00429 * 155.00397 * 17 15 12 19 19 C 1.50696 * 109.47017 * 180.02562 * 18 17 15 20 20 O 1.21291 * 120.00757 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99640 * 179.97438 * 19 18 17 22 22 C 1.37108 * 119.99958 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99430 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00034 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99740 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99996 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46947 * 90.00000 * 26 24 22 28 28 H 1.48494 * 109.46962 * 210.00130 * 26 24 22 29 29 H 1.48502 * 109.46907 * 330.00251 * 26 24 22 30 30 C 1.48124 * 127.03417 * 184.36009 * 10 8 5 31 31 H 1.07994 * 120.00502 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99870 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.00390 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47190 * 15.00061 * 3 2 1 35 35 H 1.09000 * 109.47591 * 255.00311 * 3 2 1 36 36 H 1.08997 * 109.46936 * 294.86336 * 7 5 4 37 37 H 1.09006 * 109.46721 * 54.85807 * 7 5 4 38 38 H 1.08994 * 109.47009 * 174.85480 * 7 5 4 39 39 H 1.09007 * 109.91072 * 273.87620 * 11 10 8 40 40 H 1.09001 * 109.91309 * 34.95373 * 11 10 8 41 41 H 1.09001 * 109.47063 * 58.54426 * 14 12 11 42 42 H 1.09003 * 109.46831 * 178.54576 * 14 12 11 43 43 H 1.08994 * 109.47279 * 298.54075 * 14 12 11 44 44 H 1.00903 * 110.99771 * 278.95483 * 17 15 12 45 45 H 1.09005 * 109.46741 * 299.99955 * 18 17 15 46 46 H 1.08997 * 109.47482 * 59.99749 * 18 17 15 47 47 H 0.96994 * 120.00681 * 359.97438 * 21 19 18 48 48 H 0.97004 * 119.99619 * 179.97438 * 25 24 22 49 49 H 1.08995 * 110.66514 * 337.77300 * 30 10 8 50 50 H 1.09002 * 110.65877 * 100.89626 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9076 2.4355 1.0328 6 1 3.9126 2.9322 0.0626 7 6 3.3028 3.3710 2.0816 8 6 5.3200 2.0865 1.4258 9 8 5.5673 0.9949 1.8931 10 7 6.3083 2.9873 1.2578 11 6 6.1705 4.3818 0.7978 12 6 7.3706 5.1650 1.3616 13 1 7.9578 5.5942 0.5499 14 6 6.8890 6.2665 2.3081 15 6 8.2048 4.1184 2.1359 16 1 7.9646 4.1430 3.1988 17 7 9.6417 4.3385 1.9242 18 6 10.4273 3.7990 3.0420 19 6 11.8928 4.0434 2.7901 20 8 12.2480 4.6108 1.7786 21 7 12.8089 3.6315 3.6888 22 6 14.1423 3.8534 3.4594 23 1 14.4585 4.3579 2.5583 24 6 15.0867 3.4292 4.3861 25 7 16.3647 3.6415 4.1660 26 14 14.5396 2.5573 5.9450 27 1 14.4861 1.0935 5.7006 28 1 15.5055 2.8420 7.0363 29 1 13.1922 3.0432 6.3370 30 6 7.7544 2.7813 1.5039 31 1 -0.5401 0.9352 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9352 -0.0004 34 1 1.3854 2.1161 0.2660 35 1 2.4754 1.4869 -0.9926 36 1 2.3158 3.6960 1.7525 37 1 3.2136 2.8430 3.0310 38 1 3.9481 4.2402 2.2084 39 1 6.1834 4.4163 -0.2916 40 1 5.2383 4.8055 1.1713 41 1 6.3142 5.8218 3.1204 42 1 7.7496 6.7947 2.7186 43 1 6.2603 6.9677 1.7595 44 1 9.9426 3.9423 1.0463 45 1 10.1305 4.2938 3.9669 46 1 10.2470 2.7275 3.1292 47 1 12.5250 3.1781 4.4979 48 1 17.0240 3.3457 4.8132 49 1 7.9127 1.9561 2.1980 50 1 8.2824 2.6041 0.5669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216930637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:58 Heat of formation + Delta-G solvation = -79.728816 kcal Electronic energy + Delta-G solvation = -29360.685125 eV Core-core repulsion = 25196.151133 eV Total energy + Delta-G solvation = -4164.533992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68341 -39.08774 -38.34018 -37.63433 -34.92283 -34.47154 -33.87590 -32.70819 -31.77524 -31.65763 -29.03884 -26.88611 -26.61660 -26.44788 -24.54395 -23.56486 -22.33929 -20.63458 -20.56887 -19.67645 -19.36207 -18.36517 -17.80619 -17.12267 -16.56845 -16.35683 -15.81223 -15.69216 -15.56885 -15.12351 -14.82429 -14.43514 -14.32104 -13.98708 -13.76076 -13.61894 -13.51289 -13.40641 -13.25325 -13.02720 -12.79457 -12.60451 -12.55051 -12.28505 -12.17494 -12.03272 -11.93750 -11.78266 -11.40042 -11.29757 -11.19454 -11.11827 -10.90236 -10.61005 -10.59631 -9.98304 -9.91128 -9.75415 -9.58208 -9.06228 -8.61471 -8.22985 -8.17303 -6.31992 -3.83554 1.64059 2.29295 2.38536 3.02993 3.07330 3.15581 3.41860 3.71955 3.90758 4.07869 4.10403 4.29886 4.34574 4.46228 4.50043 4.56352 4.60789 4.69470 4.83763 4.85783 4.91413 4.97453 5.01263 5.06196 5.18535 5.20920 5.23370 5.31347 5.39628 5.48685 5.52070 5.56156 5.62301 5.64269 5.70127 5.78159 5.84398 5.90993 6.01456 6.09699 6.12061 6.15707 6.62547 7.00435 7.20261 7.45116 7.56789 7.87144 8.13149 8.58272 8.93744 9.41324 9.80726 10.80993 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.001931 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.310233 B =14498.789932 C =15268.796956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.085 3.915 4 O -0.354 6.354 5 C 0.077 3.923 6 H 0.084 0.916 7 C -0.173 4.173 8 C 0.534 3.466 9 O -0.518 6.518 10 N -0.618 5.618 11 C 0.096 3.904 12 C -0.095 4.095 13 H 0.099 0.901 14 C -0.140 4.140 15 C 0.080 3.920 16 H 0.092 0.908 17 N -0.651 5.651 18 C 0.045 3.955 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.075 3.925 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.354 0.646 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.085 0.915 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.166 -0.050 -6.016 32.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.272 6.272 5 C 0.016 3.984 6 H 0.102 0.898 7 C -0.231 4.231 8 C 0.321 3.679 9 O -0.392 6.392 10 N -0.355 5.355 11 C -0.027 4.027 12 C -0.115 4.115 13 H 0.117 0.883 14 C -0.198 4.198 15 C -0.032 4.032 16 H 0.110 0.890 17 N -0.283 5.283 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.195 1.195 30 C -0.049 4.049 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.175 0.825 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -31.596 0.113 -6.005 32.162 hybrid contribution -0.332 -1.442 0.947 1.757 sum -31.928 -1.329 -5.058 32.354 Atomic orbital electron populations 1.23843 0.95462 1.02354 0.99970 1.22721 0.95613 0.98184 1.00262 1.21682 0.88904 0.96281 0.92213 1.88090 1.43953 1.34982 1.60176 1.21822 0.89181 0.87322 1.00100 0.89828 1.22292 1.01671 0.99184 0.99906 1.19999 0.85486 0.83863 0.78587 1.90746 1.83146 1.22201 1.43105 1.48609 1.07109 1.12674 1.67067 1.22476 0.99896 0.80994 0.99385 1.22083 0.94541 0.95489 0.99359 0.88322 1.21804 1.01584 0.97698 0.98663 1.22753 0.88727 0.91747 0.99974 0.88997 1.60167 1.00031 1.62636 1.05489 1.21788 0.93509 0.98064 0.95369 1.19657 0.86391 0.84730 0.85696 1.90566 1.80946 1.44996 1.28211 1.42209 1.07186 1.53476 1.20000 1.19433 0.78995 1.36605 1.08427 0.86255 1.25037 0.95068 0.97791 0.98185 1.69622 1.00017 1.46024 1.36366 0.86679 0.78779 0.80524 0.83463 1.19619 1.20146 1.19459 1.23321 0.80186 1.00203 1.01239 0.88408 0.87656 0.86361 0.92466 0.92111 0.91102 0.90726 0.90539 0.91179 0.90310 0.92946 0.91279 0.92540 0.82540 0.89317 0.93475 0.79664 0.91595 0.89639 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.31 29.02 0.42 -0.57 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.61 6.16 36.01 0.22 0.84 16 4 O -0.35 -3.80 9.55 -54.63 -0.52 -4.32 16 5 C 0.08 0.68 2.51 -27.88 -0.07 0.61 16 6 H 0.08 0.52 7.62 -51.93 -0.40 0.12 16 7 C -0.17 -1.14 9.37 37.16 0.35 -0.79 16 8 C 0.53 6.48 7.17 -10.99 -0.08 6.40 16 9 O -0.52 -8.73 16.77 -13.84 -0.23 -8.96 16 10 N -0.62 -6.25 3.29 -169.97 -0.56 -6.81 16 11 C 0.10 0.67 6.21 -2.98 -0.02 0.66 16 12 C -0.10 -0.80 3.34 -89.25 -0.30 -1.10 16 13 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 14 C -0.14 -1.06 8.89 37.16 0.33 -0.73 16 15 C 0.08 0.85 2.93 -66.02 -0.19 0.66 16 16 H 0.09 0.99 7.54 -51.93 -0.39 0.60 16 17 N -0.65 -9.10 5.95 -106.21 -0.63 -9.73 16 18 C 0.05 0.71 6.03 -4.98 -0.03 0.68 16 19 C 0.45 9.95 7.82 -10.99 -0.09 9.86 16 20 O -0.57 -14.79 15.78 5.55 0.09 -14.70 16 21 N -0.59 -13.90 5.09 -10.96 -0.06 -13.96 16 22 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 25 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 26 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 30 C 0.07 0.82 6.67 -2.31 -0.02 0.81 16 31 H 0.10 0.42 7.90 -52.49 -0.41 0.00 16 32 H 0.11 0.47 8.06 -52.49 -0.42 0.05 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.06 0.31 7.71 -51.93 -0.40 -0.10 16 35 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.07 0.33 7.99 -51.93 -0.42 -0.08 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.41 5.85 -51.93 -0.30 0.11 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.41 5.08 -51.93 -0.26 0.15 16 41 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.35 5.13 7.91 -39.29 -0.31 4.82 16 45 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.09 1.08 7.82 -51.93 -0.41 0.67 16 50 H 0.08 0.83 7.77 -51.93 -0.40 0.42 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -35.74 409.63 -7.89 -43.63 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.13 Total: 10.70 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.08 Total: 8.18 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.47 Total: -55.40 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.67 Total: -27.98 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.74 -7.89 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216930637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.099 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds