Wall clock time and date at job start Tue Mar 31 2020 23:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.54850 * 2 1 4 4 C 1.55225 * 110.77736 * 122.86294 * 2 1 3 5 5 C 1.54815 * 101.98524 * 155.50447 * 4 2 1 6 6 H 1.08999 * 110.48697 * 98.00698 * 5 4 2 7 7 C 1.50697 * 110.49020 * 220.52414 * 5 4 2 8 8 O 1.21281 * 120.00016 * 358.15085 * 7 5 4 9 9 N 1.34775 * 120.00337 * 178.15874 * 7 5 4 10 10 C 1.46499 * 120.00366 * 179.97438 * 9 7 5 11 11 C 1.53114 * 109.52625 * 154.99638 * 10 9 7 12 12 C 1.53035 * 109.28178 * 177.55750 * 11 10 9 13 13 N 1.46845 * 109.52279 * 300.82608 * 12 11 10 14 14 C 1.46906 * 110.99877 * 185.83754 * 13 12 11 15 15 C 1.50699 * 109.47140 * 169.99756 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99920 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47441 * 89.99762 * 22 20 18 24 24 H 1.48495 * 109.46914 * 210.00201 * 22 20 18 25 25 H 1.48508 * 109.46806 * 329.99819 * 22 20 18 26 26 C 1.46845 * 111.20118 * 61.73958 * 13 12 11 27 27 C 1.53037 * 109.52225 * 298.25692 * 26 13 12 28 28 C 1.54108 * 104.30506 * 339.26475 * 5 4 2 29 29 O 1.43748 * 107.29090 * 357.89846 * 28 5 4 30 30 H 1.09001 * 109.46731 * 181.42366 * 1 2 3 31 31 H 1.08999 * 109.47298 * 301.42142 * 1 2 3 32 32 H 1.09004 * 109.47480 * 61.42688 * 1 2 3 33 33 H 1.08997 * 110.89384 * 37.37692 * 4 2 1 34 34 H 1.08996 * 111.02658 * 273.69584 * 4 2 1 35 35 H 0.97004 * 119.99581 * 359.97438 * 9 7 5 36 36 H 1.09005 * 109.57301 * 34.83861 * 10 9 7 37 37 H 1.08996 * 109.50286 * 57.61844 * 11 10 9 38 38 H 1.08999 * 109.50331 * 297.50538 * 11 10 9 39 39 H 1.08995 * 109.46542 * 180.80231 * 12 11 10 40 40 H 1.09008 * 109.45947 * 60.83943 * 12 11 10 41 41 H 1.09004 * 109.47040 * 289.99694 * 14 13 12 42 42 H 1.09000 * 109.47033 * 49.99646 * 14 13 12 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00283 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46500 * 58.27251 * 26 13 12 46 46 H 1.08995 * 109.46400 * 178.24044 * 26 13 12 47 47 H 1.09001 * 109.50550 * 299.23861 * 27 26 13 48 48 H 1.09002 * 109.53767 * 179.14167 * 27 26 13 49 49 H 1.08998 * 109.87866 * 117.32626 * 28 5 4 50 50 H 1.09000 * 109.87772 * 238.48248 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0807 -0.7875 1.2190 5 6 3.4832 -1.2128 0.7202 6 1 4.2450 -0.5295 1.0955 7 6 3.7883 -2.6259 1.1455 8 8 2.9889 -3.2430 1.8172 9 7 4.9494 -3.2041 0.7796 10 6 5.2463 -4.5776 1.1935 11 6 6.2334 -5.2074 0.2069 12 6 6.5866 -6.6201 0.6778 13 7 7.1809 -6.5561 2.0190 14 6 7.6590 -7.8777 2.4466 15 6 8.4748 -7.7337 3.7055 16 8 8.6411 -6.6380 4.1982 17 7 9.0195 -8.8225 4.2837 18 6 9.7612 -8.6915 5.4292 19 1 9.9094 -7.7159 5.8680 20 6 10.3224 -9.8140 6.0257 21 7 11.0338 -9.6885 7.1234 22 14 10.0656 -11.5017 5.2671 23 1 11.1547 -11.7792 4.2966 24 1 10.0805 -12.5323 6.3361 25 1 8.7571 -11.5351 4.5655 26 6 6.2342 -5.9984 2.9933 27 6 5.8706 -4.5672 2.5916 28 6 3.3853 -1.1208 -0.8150 29 8 2.0384 -0.7335 -1.1349 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3634 0.5357 0.8769 32 1 -0.3634 0.4915 -0.9025 33 1 1.4620 -1.6597 1.4300 34 1 2.1581 -0.1458 2.0966 35 1 5.5886 -2.7106 0.2421 36 1 4.3256 -5.1611 1.2100 37 1 7.1387 -4.6021 0.1616 38 1 5.7780 -5.2566 -0.7822 39 1 7.3003 -7.0660 -0.0149 40 1 5.6829 -7.2288 0.7096 41 1 6.8056 -8.5280 2.6391 42 1 8.2769 -8.3122 1.6609 43 1 8.8861 -9.6988 3.8897 44 1 11.4259 -10.4721 7.5395 45 1 5.3322 -6.6099 3.0143 46 1 6.6920 -5.9928 3.9824 47 1 6.7702 -3.9517 2.5838 48 1 5.1562 -4.1583 3.3061 49 1 4.0846 -0.3719 -1.1868 50 1 3.6073 -2.0911 -1.2594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228065568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:27 Heat of formation + Delta-G solvation = -113.379815 kcal Electronic energy + Delta-G solvation = -29650.236534 eV Core-core repulsion = 25484.243326 eV Total energy + Delta-G solvation = -4165.993209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85665 -39.55314 -38.72381 -37.63183 -35.12049 -33.91661 -32.86286 -32.48424 -31.70117 -31.19120 -30.78583 -27.44982 -26.45655 -24.73355 -23.68429 -23.19197 -22.27417 -21.58048 -20.48386 -19.74206 -19.36093 -18.27380 -17.63086 -17.10812 -16.61798 -16.09481 -15.90146 -15.54438 -15.15767 -15.07230 -14.91399 -14.69026 -14.25482 -14.05983 -13.77607 -13.57371 -13.46541 -13.27947 -13.02767 -12.79170 -12.66459 -12.49137 -12.29255 -12.19712 -11.84816 -11.80524 -11.69484 -11.51452 -11.31830 -11.27376 -11.17590 -11.16606 -10.72464 -10.62009 -10.57683 -10.26101 -9.97582 -9.86490 -9.54547 -9.20979 -8.55663 -8.17736 -7.95436 -6.30890 -3.82194 2.33963 2.83637 3.02591 3.06782 3.15101 3.37554 3.73881 3.90855 3.91324 4.10443 4.24905 4.40420 4.53963 4.56515 4.70015 4.77900 4.81653 4.86372 4.97183 4.98227 5.11162 5.15372 5.21747 5.27004 5.30304 5.34868 5.40089 5.46800 5.51606 5.57610 5.60512 5.66715 5.71659 5.73267 5.80987 5.87887 5.91845 5.95311 6.04818 6.20713 6.41172 6.43531 6.47706 7.15965 7.24587 7.33397 7.58985 7.95874 8.14969 8.60635 8.95647 9.42889 9.83954 10.82222 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033238 B = 0.001819 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.212137 B =15390.950582 C =15718.836482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.136 4.136 5 C -0.149 4.149 6 H 0.111 0.889 7 C 0.523 3.477 8 O -0.532 6.532 9 N -0.723 5.723 10 C 0.142 3.858 11 C -0.120 4.120 12 C 0.058 3.942 13 N -0.516 5.516 14 C 0.043 3.957 15 C 0.453 3.547 16 O -0.559 6.559 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.054 3.946 27 C -0.120 4.120 28 C 0.060 3.940 29 O -0.371 6.371 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.400 0.600 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.024 0.976 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 15.196 -18.824 29.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.174 4.174 5 C -0.171 4.171 6 H 0.129 0.871 7 C 0.308 3.692 8 O -0.408 6.408 9 N -0.374 5.374 10 C 0.038 3.962 11 C -0.158 4.158 12 C -0.071 4.071 13 N -0.241 5.241 14 C -0.088 4.088 15 C 0.238 3.762 16 O -0.440 6.440 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.074 4.074 27 C -0.159 4.159 28 C -0.018 4.018 29 O -0.290 6.290 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.234 0.766 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.125 0.875 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.597 15.653 -18.038 29.083 hybrid contribution -0.132 -1.757 -0.459 1.821 sum -16.729 13.896 -18.497 28.550 Atomic orbital electron populations 1.21770 0.92818 1.03261 1.02546 1.23238 0.95616 0.95155 0.84662 0.91060 1.23222 0.94063 1.01833 0.98267 1.22769 1.00973 0.95493 0.97867 0.87063 1.20254 0.81337 0.88004 0.79591 1.90712 1.47505 1.64503 1.38118 1.46103 1.19963 1.15978 1.55355 1.21144 0.98593 0.81644 0.94784 1.21829 0.99284 0.96960 0.97769 1.22029 0.97934 0.95708 0.91381 1.61535 1.38380 1.22772 1.01384 1.21869 0.98720 0.90272 0.97949 1.19648 0.84715 0.85189 0.86624 1.90524 1.62651 1.25575 1.65296 1.42215 1.48096 1.07265 1.25509 1.19422 1.26044 0.97794 1.00021 0.86279 1.25034 0.96843 0.98167 0.96115 1.69619 1.33420 1.30614 1.18519 0.86676 0.78633 0.84473 0.79620 1.19622 1.20214 1.19537 1.22227 0.93083 0.93624 0.98421 1.21909 1.00779 0.97778 0.95393 1.23090 0.85412 1.01210 0.92065 1.88910 1.27200 1.73831 1.39106 0.91569 0.90895 0.91749 0.88289 0.89634 0.76636 0.89773 0.90252 0.91122 0.90240 0.94951 0.93335 0.89166 0.79734 0.91635 0.95753 0.87473 0.90631 0.91392 0.91226 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C 0.07 0.51 3.97 -25.55 -0.10 0.40 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.14 -1.07 5.97 -24.60 -0.15 -1.21 16 5 C -0.15 -1.10 3.43 -90.24 -0.31 -1.41 16 6 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 7 C 0.52 5.49 6.92 -10.99 -0.08 5.41 16 8 O -0.53 -7.83 15.11 5.56 0.08 -7.74 16 9 N -0.72 -6.43 4.98 -53.69 -0.27 -6.70 16 10 C 0.14 1.57 2.52 -67.81 -0.17 1.40 16 11 C -0.12 -1.14 5.57 -26.65 -0.15 -1.29 16 12 C 0.06 0.66 5.46 -3.84 -0.02 0.64 16 13 N -0.52 -7.98 4.40 -236.11 -1.04 -9.02 16 14 C 0.04 0.71 5.45 -4.97 -0.03 0.69 16 15 C 0.45 10.14 7.46 -10.99 -0.08 10.06 16 16 O -0.56 -14.64 13.90 5.55 0.08 -14.57 16 17 N -0.59 -13.98 5.09 -10.97 -0.06 -14.03 16 18 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 22 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 26 C 0.05 0.87 5.11 -3.83 -0.02 0.85 16 27 C -0.12 -1.64 5.67 -26.65 -0.15 -1.79 16 28 C 0.06 0.41 7.33 37.74 0.28 0.69 16 29 O -0.37 -3.43 11.23 -35.23 -0.40 -3.83 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 1.01 6.82 -51.93 -0.35 0.66 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.40 8.61 -40.82 -0.35 2.05 16 36 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 40 H 0.03 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 42 H 0.09 1.28 7.99 -51.93 -0.41 0.86 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.59 7.64 -51.93 -0.40 0.19 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -34.93 395.16 -8.78 -43.71 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.34 Total: 10.36 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.87 Total: 6.21 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.59 Total: -54.70 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.23 Total: -26.14 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.93 -8.78 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228065568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.665 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds