Wall clock time and date at job start Tue Mar 31 2020 23:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.54850 * 2 1 4 4 C 1.55225 * 110.77736 * 122.86294 * 2 1 3 5 5 C 1.54815 * 101.98524 * 155.50447 * 4 2 1 6 6 H 1.08999 * 110.48697 * 98.00698 * 5 4 2 7 7 C 1.50697 * 110.49020 * 220.52414 * 5 4 2 8 8 O 1.21281 * 120.00016 * 358.15085 * 7 5 4 9 9 N 1.34775 * 120.00337 * 178.15874 * 7 5 4 10 10 C 1.46499 * 120.00366 * 179.97438 * 9 7 5 11 11 C 1.53114 * 109.52625 * 154.99638 * 10 9 7 12 12 C 1.53035 * 109.28178 * 177.55750 * 11 10 9 13 13 N 1.46845 * 109.52279 * 300.82608 * 12 11 10 14 14 C 1.46906 * 110.99877 * 185.83754 * 13 12 11 15 15 C 1.50699 * 109.47140 * 169.99756 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99920 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47441 * 89.99762 * 22 20 18 24 24 H 1.48495 * 109.46914 * 210.00201 * 22 20 18 25 25 H 1.48508 * 109.46806 * 329.99819 * 22 20 18 26 26 C 1.46845 * 111.20118 * 61.73958 * 13 12 11 27 27 C 1.53037 * 109.52225 * 298.25692 * 26 13 12 28 28 C 1.54108 * 104.30506 * 339.26475 * 5 4 2 29 29 O 1.43748 * 107.29090 * 357.89846 * 28 5 4 30 30 H 1.09001 * 109.46731 * 181.42366 * 1 2 3 31 31 H 1.08999 * 109.47298 * 301.42142 * 1 2 3 32 32 H 1.09004 * 109.47480 * 61.42688 * 1 2 3 33 33 H 1.08997 * 110.89384 * 37.37692 * 4 2 1 34 34 H 1.08996 * 111.02658 * 273.69584 * 4 2 1 35 35 H 0.97004 * 119.99581 * 359.97438 * 9 7 5 36 36 H 1.09005 * 109.57301 * 34.83861 * 10 9 7 37 37 H 1.08996 * 109.50286 * 57.61844 * 11 10 9 38 38 H 1.08999 * 109.50331 * 297.50538 * 11 10 9 39 39 H 1.08995 * 109.46542 * 180.80231 * 12 11 10 40 40 H 1.09008 * 109.45947 * 60.83943 * 12 11 10 41 41 H 1.09004 * 109.47040 * 289.99694 * 14 13 12 42 42 H 1.09000 * 109.47033 * 49.99646 * 14 13 12 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00283 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46500 * 58.27251 * 26 13 12 46 46 H 1.08995 * 109.46400 * 178.24044 * 26 13 12 47 47 H 1.09001 * 109.50550 * 299.23861 * 27 26 13 48 48 H 1.09002 * 109.53767 * 179.14167 * 27 26 13 49 49 H 1.08998 * 109.87866 * 117.32626 * 28 5 4 50 50 H 1.09000 * 109.87772 * 238.48248 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0807 -0.7875 1.2190 5 6 3.4832 -1.2128 0.7202 6 1 4.2450 -0.5295 1.0955 7 6 3.7883 -2.6259 1.1455 8 8 2.9889 -3.2430 1.8172 9 7 4.9494 -3.2041 0.7796 10 6 5.2463 -4.5776 1.1935 11 6 6.2334 -5.2074 0.2069 12 6 6.5866 -6.6201 0.6778 13 7 7.1809 -6.5561 2.0190 14 6 7.6590 -7.8777 2.4466 15 6 8.4748 -7.7337 3.7055 16 8 8.6411 -6.6380 4.1982 17 7 9.0195 -8.8225 4.2837 18 6 9.7612 -8.6915 5.4292 19 1 9.9094 -7.7159 5.8680 20 6 10.3224 -9.8140 6.0257 21 7 11.0338 -9.6885 7.1234 22 14 10.0656 -11.5017 5.2671 23 1 11.1547 -11.7792 4.2966 24 1 10.0805 -12.5323 6.3361 25 1 8.7571 -11.5351 4.5655 26 6 6.2342 -5.9984 2.9933 27 6 5.8706 -4.5672 2.5916 28 6 3.3853 -1.1208 -0.8150 29 8 2.0384 -0.7335 -1.1349 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3634 0.5357 0.8769 32 1 -0.3634 0.4915 -0.9025 33 1 1.4620 -1.6597 1.4300 34 1 2.1581 -0.1458 2.0966 35 1 5.5886 -2.7106 0.2421 36 1 4.3256 -5.1611 1.2100 37 1 7.1387 -4.6021 0.1616 38 1 5.7780 -5.2566 -0.7822 39 1 7.3003 -7.0660 -0.0149 40 1 5.6829 -7.2288 0.7096 41 1 6.8056 -8.5280 2.6391 42 1 8.2769 -8.3122 1.6609 43 1 8.8861 -9.6988 3.8897 44 1 11.4259 -10.4721 7.5395 45 1 5.3322 -6.6099 3.0143 46 1 6.6920 -5.9928 3.9824 47 1 6.7702 -3.9517 2.5838 48 1 5.1562 -4.1583 3.3061 49 1 4.0846 -0.3719 -1.1868 50 1 3.6073 -2.0911 -1.2594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228065568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:26 Heat of formation + Delta-G solvation = -142.130898 kcal Electronic energy + Delta-G solvation = -29651.483275 eV Core-core repulsion = 25484.243326 eV Total energy + Delta-G solvation = -4167.239949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62637 -40.73829 -39.84584 -38.91218 -36.29198 -35.77586 -33.79011 -33.58607 -33.10399 -32.06563 -31.82906 -28.85053 -27.08120 -26.26203 -24.75717 -24.24021 -23.23535 -22.15898 -21.38181 -21.25034 -20.64002 -20.19705 -18.33460 -17.81803 -17.62057 -17.48175 -16.90514 -16.64778 -16.44157 -16.31920 -15.79709 -15.76418 -15.45174 -15.19518 -14.99960 -14.90251 -14.54230 -14.42992 -14.23011 -14.06892 -13.78495 -13.31367 -13.27504 -13.22499 -12.97259 -12.83095 -12.77817 -12.42808 -12.36404 -12.25792 -12.18214 -12.09920 -11.99294 -11.85368 -11.83581 -11.58265 -11.45110 -11.01655 -10.55403 -10.36666 -10.23441 -10.06241 -9.21361 -8.40660 -6.01182 1.30260 1.35727 1.44429 1.53259 1.97400 2.07265 2.23307 2.62512 2.85138 3.14401 3.22143 3.31565 3.61404 3.74933 3.84204 3.89469 4.01019 4.05024 4.12724 4.18396 4.25748 4.28795 4.33882 4.40819 4.46784 4.49810 4.54668 4.59802 4.62854 4.70953 4.74521 4.83826 4.86585 4.90391 4.98099 4.98469 5.07301 5.11667 5.15722 5.26858 5.29968 5.47877 5.54025 5.90299 5.91142 6.01975 6.22894 6.51225 6.61025 6.89726 7.19967 7.41292 7.99025 8.77036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033238 B = 0.001819 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.212137 B =15390.950582 C =15718.836482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.093 0.907 4 C -0.139 4.139 5 C -0.143 4.143 6 H 0.140 0.860 7 C 0.518 3.482 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.151 3.849 11 C -0.111 4.111 12 C 0.055 3.945 13 N -0.533 5.533 14 C 0.054 3.946 15 C 0.450 3.550 16 O -0.605 6.605 17 N -0.593 5.593 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.059 3.941 27 C -0.111 4.111 28 C 0.060 3.940 29 O -0.397 6.397 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.417 0.583 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.029 0.971 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.099 0.901 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 14.443 -22.794 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.164 4.164 6 H 0.158 0.842 7 C 0.305 3.695 8 O -0.461 6.461 9 N -0.361 5.361 10 C 0.046 3.954 11 C -0.149 4.149 12 C -0.072 4.072 13 N -0.258 5.258 14 C -0.077 4.077 15 C 0.238 3.762 16 O -0.489 6.489 17 N -0.235 5.235 18 C -0.456 4.456 19 H 0.073 0.927 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.156 1.156 26 C -0.069 4.069 27 C -0.150 4.150 28 C -0.017 4.017 29 O -0.317 6.317 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.145 0.855 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.263 14.929 -22.066 31.746 hybrid contribution 0.071 -1.371 0.848 1.614 sum -17.192 13.558 -21.218 30.489 Atomic orbital electron populations 1.21802 0.92645 1.02511 1.03522 1.23372 0.95926 0.95758 0.83573 0.88898 1.23209 0.94064 1.01073 0.99357 1.22817 1.01386 0.93589 0.98605 0.84235 1.20872 0.80935 0.89032 0.78626 1.90697 1.49091 1.65906 1.40373 1.45955 1.19957 1.15307 1.54867 1.20920 0.98111 0.82793 0.93595 1.21810 0.98980 0.95758 0.98363 1.22216 0.98789 0.97220 0.89003 1.61498 1.38973 1.22376 1.02967 1.21832 0.98997 0.91588 0.95313 1.20938 0.83525 0.84010 0.87727 1.90515 1.63864 1.27557 1.66923 1.42042 1.48205 1.08699 1.24548 1.18990 1.28449 0.95827 1.02312 0.92739 1.26110 0.95567 1.03508 0.96249 1.69806 1.34686 1.32584 1.20564 0.85362 0.80690 0.76476 0.78963 1.17969 1.20188 1.15586 1.22010 0.92896 0.95273 0.96739 1.21779 1.00007 0.96092 0.97121 1.23235 0.85081 1.02179 0.91253 1.88882 1.28484 1.74351 1.40004 0.93222 0.89345 0.91308 0.91293 0.88344 0.74544 0.91340 0.89799 0.88005 0.87853 0.93952 0.90868 0.85489 0.77543 0.91209 0.95322 0.92256 0.91532 0.93202 0.88299 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 71.98 0.70 -1.04 16 2 C 0.07 0.90 3.97 31.36 0.12 1.03 16 3 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.14 -2.08 5.97 31.98 0.19 -1.89 16 5 C -0.14 -1.84 3.43 -10.55 -0.04 -1.88 16 6 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 7 C 0.52 10.49 6.92 87.66 0.61 11.10 16 8 O -0.58 -17.55 15.11 -3.03 -0.05 -17.60 16 9 N -0.71 -11.42 4.98 -442.16 -2.20 -13.62 16 10 C 0.15 3.13 2.52 45.07 0.11 3.24 16 11 C -0.11 -1.73 5.57 30.64 0.17 -1.56 16 12 C 0.06 1.05 5.46 86.33 0.47 1.52 16 13 N -0.53 -15.58 4.40 -900.93 -3.96 -19.54 16 14 C 0.05 1.64 5.45 85.56 0.47 2.10 16 15 C 0.45 20.35 7.46 87.66 0.65 21.00 16 16 O -0.60 -33.40 13.90 -3.06 -0.04 -33.44 16 17 N -0.59 -28.03 5.09 -306.99 -1.56 -29.59 16 18 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 19 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 21 N -0.94 -56.78 13.96 21.66 0.30 -56.48 16 22 Si 0.97 38.92 27.74 68.60 1.90 40.83 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 24 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 26 C 0.06 1.94 5.11 86.33 0.44 2.38 16 27 C -0.11 -3.10 5.67 30.65 0.17 -2.93 16 28 C 0.06 0.67 7.33 72.36 0.53 1.20 16 29 O -0.40 -6.71 11.23 -148.98 -1.67 -8.38 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.47 6.82 -2.39 -0.02 1.46 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 3.81 8.61 -92.71 -0.80 3.01 16 36 H 0.07 1.69 7.58 -2.38 -0.02 1.67 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.54 8.01 -2.39 -0.02 1.52 16 40 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 1.93 8.12 -2.38 -0.02 1.91 16 42 H 0.13 3.00 7.99 -2.39 -0.02 2.98 16 43 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 44 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 45 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 2.51 5.78 -2.39 -0.01 2.50 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.09 0.96 7.64 -2.39 -0.02 0.94 16 Total: -1.00 -85.14 395.16 -1.80 -86.94 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.44 Total: 35.41 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.92 Total: 15.48 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.42 Total: -119.23 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -1.76 Total: -59.42 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.83 kcal Total: -85.14 -1.80 -86.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228065568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.194 kcal (2) G-P(sol) polarization free energy of solvation -85.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds