Wall clock time and date at job start Tue Mar 31 2020 23:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.43711 * 2 1 4 4 C 1.54102 * 110.60144 * 122.62857 * 2 1 3 5 5 O 1.43880 * 107.37535 * 116.82868 * 4 2 1 6 6 C 1.44378 * 106.90106 * 26.27472 * 5 4 2 7 7 H 1.09003 * 110.62060 * 78.73499 * 6 5 4 8 8 C 1.50703 * 110.62166 * 201.57775 * 6 5 4 9 9 O 1.21283 * 119.99488 * 1.41593 * 8 6 5 10 10 N 1.34777 * 120.00290 * 181.42033 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.53122 * 109.52121 * 274.59445 * 11 10 8 13 13 C 1.53046 * 109.27285 * 182.50781 * 12 11 10 14 14 N 1.46841 * 109.57797 * 59.08507 * 13 12 11 15 15 C 1.46896 * 111.00089 * 174.19398 * 14 13 12 16 16 C 1.50708 * 109.46776 * 294.20750 * 15 14 13 17 17 O 1.21289 * 120.00184 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99372 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99190 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99881 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00463 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46741 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47483 * 119.99811 * 23 21 19 26 26 H 1.48494 * 109.47192 * 240.00036 * 23 21 19 27 27 C 1.46849 * 111.19500 * 298.28522 * 14 13 12 28 28 C 1.53037 * 109.52212 * 61.74945 * 27 14 13 29 29 C 1.54817 * 110.48368 * 237.45637 * 2 1 3 30 30 H 1.08994 * 109.47409 * 182.54593 * 1 2 3 31 31 H 1.09007 * 109.46822 * 302.54446 * 1 2 3 32 32 H 1.08999 * 109.47504 * 62.53704 * 1 2 3 33 33 H 1.08995 * 109.87522 * 236.12564 * 4 2 1 34 34 H 1.08999 * 109.87647 * 357.12143 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.52833 * 34.71967 * 11 10 8 37 37 H 1.08999 * 109.50422 * 302.38354 * 12 11 10 38 38 H 1.09001 * 109.50524 * 62.50323 * 12 11 10 39 39 H 1.09004 * 109.40820 * 299.06434 * 13 12 11 40 40 H 1.09004 * 109.45235 * 179.12799 * 13 12 11 41 41 H 1.08998 * 109.47377 * 54.20467 * 15 14 13 42 42 H 1.08998 * 109.47199 * 174.20939 * 15 14 13 43 43 H 0.96993 * 120.00369 * 0.02562 * 18 16 15 44 44 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.46893 * 301.72863 * 27 14 13 46 46 H 1.09000 * 109.46015 * 181.75916 * 27 14 13 47 47 H 1.08996 * 109.50329 * 180.87898 * 28 27 14 48 48 H 1.08992 * 109.51005 * 60.75536 * 28 27 14 49 49 H 1.09004 * 110.90084 * 102.11203 * 29 2 1 50 50 H 1.08997 * 110.90800 * 338.51460 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0723 -0.7778 1.2148 5 8 2.8036 -1.9090 0.7092 6 6 3.2680 -1.5527 -0.6106 7 1 4.1474 -0.9117 -0.5480 8 6 3.5706 -2.7885 -1.4183 9 8 3.3864 -3.8869 -0.9382 10 7 4.0461 -2.6731 -2.6741 11 6 4.3345 -3.8744 -3.4614 12 6 5.7469 -4.3704 -3.1394 13 6 6.0656 -5.5880 -4.0101 14 7 5.9673 -5.2183 -5.4278 15 6 6.4003 -6.3247 -6.2916 16 6 7.8710 -6.5790 -6.0829 17 8 8.4968 -5.9052 -5.2920 18 7 8.4907 -7.5560 -6.7744 19 6 9.8287 -7.7870 -6.5849 20 1 10.3862 -7.1858 -5.8819 21 6 10.4678 -8.7937 -7.2981 22 7 9.7895 -9.5249 -8.1539 23 14 12.2907 -9.1090 -7.0395 24 1 12.8192 -8.1571 -6.0296 25 1 12.4894 -10.5005 -6.5604 26 1 13.0128 -8.9196 -8.3231 27 6 4.6068 -4.7846 -5.7704 28 6 4.2452 -3.5421 -4.9535 29 6 2.0718 -0.7802 -1.2226 30 1 -0.3634 -1.0266 0.0456 31 1 -0.3633 0.5529 0.8664 32 1 -0.3634 0.4739 -0.9118 33 1 2.7374 -0.1397 1.7965 34 1 1.2444 -1.1157 1.8381 35 1 4.1931 -1.7946 -3.0582 36 1 3.6109 -4.6523 -3.2176 37 1 6.4666 -3.5782 -3.3456 38 1 5.8036 -4.6494 -2.0872 39 1 5.3546 -6.3850 -3.7924 40 1 7.0764 -5.9341 -3.7942 41 1 5.8370 -7.2235 -6.0407 42 1 6.2212 -6.0630 -7.3345 43 1 7.9902 -8.0951 -7.4066 44 1 10.2356 -10.2274 -8.6520 45 1 3.9026 -5.5853 -5.5445 46 1 4.5580 -4.5474 -6.8331 47 1 3.2296 -3.2297 -5.1965 48 1 4.9405 -2.7365 -5.1891 49 1 2.4080 -0.0966 -2.0022 50 1 1.3204 -1.4689 -1.6086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228359665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:08 Heat of formation + Delta-G solvation = -118.517691 kcal Electronic energy + Delta-G solvation = -29570.837275 eV Core-core repulsion = 25404.621271 eV Total energy + Delta-G solvation = -4166.216004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72154 -39.50956 -38.59091 -37.44065 -35.02202 -33.99250 -33.82477 -32.10814 -31.20383 -30.71768 -30.23310 -27.16725 -26.77422 -24.86696 -24.01734 -23.11351 -22.40740 -21.01686 -20.54687 -19.79992 -19.16591 -17.83662 -17.73089 -17.23431 -16.42993 -15.95478 -15.59415 -15.42648 -15.25304 -14.90271 -14.84493 -14.56402 -14.15835 -14.01095 -13.76696 -13.71754 -13.45196 -13.23309 -13.09390 -13.04839 -12.98021 -12.30319 -12.17633 -11.87736 -11.72268 -11.66743 -11.48654 -11.45996 -11.28033 -11.16543 -11.07931 -11.05737 -10.63314 -10.50186 -10.32452 -10.20839 -10.19487 -9.75651 -9.47503 -9.14275 -8.41073 -7.95453 -7.81794 -6.39793 -3.80369 2.39012 2.64900 3.17821 3.28331 3.35562 3.62054 3.91046 3.92569 4.00474 4.17868 4.26331 4.32513 4.52925 4.59582 4.66029 4.76546 4.91725 4.92196 5.04896 5.08315 5.08503 5.16000 5.24687 5.27384 5.35259 5.37470 5.43922 5.44966 5.50512 5.56878 5.64868 5.70722 5.71265 5.82455 5.84563 5.98839 6.01668 6.12511 6.24830 6.31060 6.36598 6.50010 6.57077 7.27069 7.33934 7.44797 7.57505 8.04307 8.09031 8.64191 9.20496 9.57009 10.08835 10.78072 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.001789 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.116740 B =15644.273508 C =16168.818373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.046 3.954 5 O -0.346 6.346 6 C 0.058 3.942 7 H 0.096 0.904 8 C 0.518 3.482 9 O -0.517 6.517 10 N -0.721 5.721 11 C 0.144 3.856 12 C -0.120 4.120 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.119 4.119 29 C -0.140 4.140 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.270 0.730 45 H 0.032 0.968 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 19.495 9.961 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.031 4.031 5 O -0.264 6.264 6 C -0.003 4.003 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.391 6.391 10 N -0.374 5.374 11 C 0.041 3.959 12 C -0.159 4.159 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.157 4.157 29 C -0.178 4.178 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.997 19.167 10.786 29.063 hybrid contribution 0.106 -0.581 -0.538 0.798 sum -18.892 18.587 10.249 28.415 Atomic orbital electron populations 1.21832 0.93595 1.02526 1.02224 1.22544 0.97426 1.00098 0.94421 0.89450 1.23381 0.95925 0.87908 0.95881 1.89070 1.71814 1.37029 1.28509 1.22991 0.98408 0.94074 0.84819 0.88632 1.20146 0.77281 0.90393 0.81958 1.90750 1.50950 1.27663 1.69778 1.45990 1.66913 1.10174 1.14299 1.21144 0.97783 0.86904 0.90119 1.21921 0.95447 0.98991 0.99567 1.22217 1.03516 0.95046 0.86511 1.61541 1.21872 1.36852 1.03804 1.21834 0.95969 0.92741 0.97967 1.19753 0.88237 0.83719 0.85344 1.90483 1.66751 1.50163 1.38682 1.41878 1.10036 1.30422 1.37844 1.19748 0.84458 1.15828 1.22664 0.87862 1.25254 1.00430 0.96184 0.96126 1.69621 1.36935 1.21646 1.26170 0.85807 0.82162 0.78215 0.78200 1.19238 1.20802 1.20790 1.22027 0.89465 0.95880 0.99724 1.21826 1.01582 0.99259 0.93074 1.23211 0.97186 0.99139 0.98248 0.92046 0.92144 0.92107 0.91987 0.89301 0.76704 0.89763 0.90667 0.91369 0.95825 0.87494 0.93447 0.89317 0.77509 0.91969 0.94978 0.90274 0.91184 0.90296 0.89249 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.93 37.16 0.33 -0.32 16 2 C -0.13 -0.65 3.64 -89.09 -0.32 -0.97 16 3 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 4 C 0.05 0.33 7.37 37.73 0.28 0.60 16 5 O -0.35 -3.98 10.81 -54.30 -0.59 -4.56 16 6 C 0.06 0.52 3.76 -26.83 -0.10 0.42 16 7 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 8 C 0.52 6.17 7.17 -10.98 -0.08 6.09 16 9 O -0.52 -8.76 16.23 -13.51 -0.22 -8.98 16 10 N -0.72 -6.89 5.08 -53.68 -0.27 -7.16 16 11 C 0.14 1.69 2.52 -67.80 -0.17 1.52 16 12 C -0.12 -1.75 5.68 -26.64 -0.15 -1.90 16 13 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 14 N -0.52 -8.45 4.40 -236.11 -1.04 -9.48 16 15 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 16 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 17 O -0.58 -15.42 13.90 5.55 0.08 -15.34 16 18 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.06 0.71 5.46 -3.83 -0.02 0.68 16 28 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 29 C -0.14 -0.82 6.13 -24.72 -0.15 -0.97 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.58 7.70 -51.93 -0.40 0.18 16 35 H 0.40 2.51 8.60 -40.82 -0.35 2.16 16 36 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 41 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 42 H 0.09 1.40 7.99 -51.93 -0.41 0.99 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.59 7.78 -51.93 -0.40 0.18 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -34.91 399.81 -9.71 -44.62 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.43 Total: 9.09 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.91 Total: 7.93 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.64 Total: -54.92 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.73 Total: -28.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.91 -9.71 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228359665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.899 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds