Wall clock time and date at job start Tue Mar 31 2020 23:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.43711 * 2 1 4 4 C 1.54102 * 110.60144 * 122.62857 * 2 1 3 5 5 O 1.43880 * 107.37535 * 116.82868 * 4 2 1 6 6 C 1.44378 * 106.90106 * 26.27472 * 5 4 2 7 7 H 1.09003 * 110.62060 * 78.73499 * 6 5 4 8 8 C 1.50703 * 110.62166 * 201.57775 * 6 5 4 9 9 O 1.21283 * 119.99488 * 1.41593 * 8 6 5 10 10 N 1.34777 * 120.00290 * 181.42033 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.53122 * 109.52121 * 274.59445 * 11 10 8 13 13 C 1.53046 * 109.27285 * 182.50781 * 12 11 10 14 14 N 1.46841 * 109.57797 * 59.08507 * 13 12 11 15 15 C 1.46896 * 111.00089 * 174.19398 * 14 13 12 16 16 C 1.50708 * 109.46776 * 294.20750 * 15 14 13 17 17 O 1.21289 * 120.00184 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99372 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99190 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99881 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00463 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46741 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47483 * 119.99811 * 23 21 19 26 26 H 1.48494 * 109.47192 * 240.00036 * 23 21 19 27 27 C 1.46849 * 111.19500 * 298.28522 * 14 13 12 28 28 C 1.53037 * 109.52212 * 61.74945 * 27 14 13 29 29 C 1.54817 * 110.48368 * 237.45637 * 2 1 3 30 30 H 1.08994 * 109.47409 * 182.54593 * 1 2 3 31 31 H 1.09007 * 109.46822 * 302.54446 * 1 2 3 32 32 H 1.08999 * 109.47504 * 62.53704 * 1 2 3 33 33 H 1.08995 * 109.87522 * 236.12564 * 4 2 1 34 34 H 1.08999 * 109.87647 * 357.12143 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.52833 * 34.71967 * 11 10 8 37 37 H 1.08999 * 109.50422 * 302.38354 * 12 11 10 38 38 H 1.09001 * 109.50524 * 62.50323 * 12 11 10 39 39 H 1.09004 * 109.40820 * 299.06434 * 13 12 11 40 40 H 1.09004 * 109.45235 * 179.12799 * 13 12 11 41 41 H 1.08998 * 109.47377 * 54.20467 * 15 14 13 42 42 H 1.08998 * 109.47199 * 174.20939 * 15 14 13 43 43 H 0.96993 * 120.00369 * 0.02562 * 18 16 15 44 44 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.46893 * 301.72863 * 27 14 13 46 46 H 1.09000 * 109.46015 * 181.75916 * 27 14 13 47 47 H 1.08996 * 109.50329 * 180.87898 * 28 27 14 48 48 H 1.08992 * 109.51005 * 60.75536 * 28 27 14 49 49 H 1.09004 * 110.90084 * 102.11203 * 29 2 1 50 50 H 1.08997 * 110.90800 * 338.51460 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0723 -0.7778 1.2148 5 8 2.8036 -1.9090 0.7092 6 6 3.2680 -1.5527 -0.6106 7 1 4.1474 -0.9117 -0.5480 8 6 3.5706 -2.7885 -1.4183 9 8 3.3864 -3.8869 -0.9382 10 7 4.0461 -2.6731 -2.6741 11 6 4.3345 -3.8744 -3.4614 12 6 5.7469 -4.3704 -3.1394 13 6 6.0656 -5.5880 -4.0101 14 7 5.9673 -5.2183 -5.4278 15 6 6.4003 -6.3247 -6.2916 16 6 7.8710 -6.5790 -6.0829 17 8 8.4968 -5.9052 -5.2920 18 7 8.4907 -7.5560 -6.7744 19 6 9.8287 -7.7870 -6.5849 20 1 10.3862 -7.1858 -5.8819 21 6 10.4678 -8.7937 -7.2981 22 7 9.7895 -9.5249 -8.1539 23 14 12.2907 -9.1090 -7.0395 24 1 12.8192 -8.1571 -6.0296 25 1 12.4894 -10.5005 -6.5604 26 1 13.0128 -8.9196 -8.3231 27 6 4.6068 -4.7846 -5.7704 28 6 4.2452 -3.5421 -4.9535 29 6 2.0718 -0.7802 -1.2226 30 1 -0.3634 -1.0266 0.0456 31 1 -0.3633 0.5529 0.8664 32 1 -0.3634 0.4739 -0.9118 33 1 2.7374 -0.1397 1.7965 34 1 1.2444 -1.1157 1.8381 35 1 4.1931 -1.7946 -3.0582 36 1 3.6109 -4.6523 -3.2176 37 1 6.4666 -3.5782 -3.3456 38 1 5.8036 -4.6494 -2.0872 39 1 5.3546 -6.3850 -3.7924 40 1 7.0764 -5.9341 -3.7942 41 1 5.8370 -7.2235 -6.0407 42 1 6.2212 -6.0630 -7.3345 43 1 7.9902 -8.0951 -7.4066 44 1 10.2356 -10.2274 -8.6520 45 1 3.9026 -5.5853 -5.5445 46 1 4.5580 -4.5474 -6.8331 47 1 3.2296 -3.2297 -5.1965 48 1 4.9405 -2.7365 -5.1891 49 1 2.4080 -0.0966 -2.0022 50 1 1.3204 -1.4689 -1.6086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228359665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:07 Heat of formation + Delta-G solvation = -145.269534 kcal Electronic energy + Delta-G solvation = -29571.997322 eV Core-core repulsion = 25404.621271 eV Total energy + Delta-G solvation = -4167.376051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54641 -40.66808 -39.83977 -38.83877 -36.26389 -35.74080 -34.50729 -33.37668 -33.00548 -31.82257 -31.00914 -28.61247 -27.25050 -26.44052 -25.07126 -24.23463 -23.48837 -21.58092 -21.39449 -21.02984 -20.78188 -19.86448 -18.51817 -17.95540 -17.66848 -17.27334 -16.75404 -16.50869 -16.35655 -16.16442 -15.95812 -15.80408 -15.47632 -15.35622 -15.01160 -14.71349 -14.62076 -14.31238 -14.17610 -13.77721 -13.61867 -13.50770 -13.49118 -13.18864 -12.94899 -12.79550 -12.78677 -12.42064 -12.33173 -12.18690 -12.11218 -12.09255 -11.93851 -11.85818 -11.66903 -11.56768 -11.44043 -10.92054 -10.60245 -10.30461 -10.09038 -9.96950 -9.20403 -8.45865 -5.94111 1.36383 1.41422 1.49299 1.55509 1.85286 2.07133 2.28804 2.76803 3.01576 3.21037 3.38662 3.38912 3.61781 3.74962 3.84443 3.86085 4.01545 4.07661 4.09590 4.19738 4.24571 4.30425 4.36812 4.47897 4.52702 4.56665 4.57458 4.63622 4.70096 4.74096 4.75602 4.82579 4.90088 4.92968 4.99064 5.05864 5.08042 5.12222 5.16831 5.29235 5.36538 5.42049 5.45376 5.79573 5.89498 6.07856 6.25356 6.52407 6.62264 7.14521 7.20022 7.58349 8.14506 8.71806 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.001789 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.116740 B =15644.273508 C =16168.818373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 H 0.112 0.888 4 C 0.037 3.963 5 O -0.391 6.391 6 C 0.057 3.943 7 H 0.121 0.879 8 C 0.513 3.487 9 O -0.577 6.577 10 N -0.702 5.702 11 C 0.152 3.848 12 C -0.111 4.111 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.053 3.947 28 C -0.108 4.108 29 C -0.133 4.133 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.419 0.581 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.024 0.976 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.039 0.961 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.123 0.877 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.051 21.880 8.655 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 H 0.130 0.870 4 C -0.039 4.039 5 O -0.310 6.310 6 C -0.004 4.004 7 H 0.138 0.862 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.355 5.355 11 C 0.047 3.953 12 C -0.150 4.150 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.195 1.195 27 C -0.074 4.074 28 C -0.146 4.146 29 C -0.170 4.170 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.105 0.895 49 H 0.142 0.858 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.381 21.600 9.442 31.162 hybrid contribution 0.502 -1.310 -0.076 1.405 sum -19.879 20.289 9.365 29.909 Atomic orbital electron populations 1.21832 0.93285 1.01758 1.03240 1.22563 0.97623 1.00775 0.92794 0.86990 1.23605 0.96001 0.87329 0.96978 1.89030 1.72653 1.39432 1.29855 1.23177 1.00618 0.92708 0.83876 0.86176 1.20855 0.76124 0.90716 0.82345 1.90722 1.53638 1.30119 1.71117 1.45779 1.65639 1.10564 1.13537 1.20926 0.95018 0.87436 0.91915 1.21788 0.97522 0.97877 0.97844 1.22005 1.00804 0.96130 0.87886 1.61525 1.25028 1.36040 1.02796 1.21735 0.91534 0.94252 0.99874 1.20828 0.90574 0.82163 0.83641 1.90463 1.68450 1.51173 1.39871 1.41943 1.09482 1.31305 1.38573 1.19683 0.85933 1.16885 1.23551 0.90416 1.26013 1.04430 0.95400 0.95459 1.69677 1.38447 1.21773 1.26302 0.84884 0.77132 0.78100 0.78293 1.19921 1.19763 1.19482 1.22231 0.86858 0.96886 1.01457 1.21797 1.03793 0.98386 0.90606 1.23250 0.95479 0.99070 0.99242 0.93723 0.91229 0.91006 0.90694 0.89546 0.74287 0.91507 0.91159 0.93380 0.95798 0.92015 0.91938 0.86472 0.77039 0.91365 0.94281 0.88035 0.87730 0.89487 0.85837 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.93 71.98 0.64 -0.36 16 2 C -0.12 -0.90 3.64 -9.80 -0.04 -0.94 16 3 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 4 C 0.04 0.49 7.37 72.35 0.53 1.02 16 5 O -0.39 -8.99 10.81 -130.75 -1.41 -10.41 16 6 C 0.06 0.93 3.76 30.53 0.11 1.04 16 7 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 8 C 0.51 12.06 7.17 87.66 0.63 12.69 16 9 O -0.58 -20.41 16.23 15.19 0.25 -20.16 16 10 N -0.70 -12.25 5.08 -442.14 -2.25 -14.50 16 11 C 0.15 3.40 2.52 45.07 0.11 3.51 16 12 C -0.11 -3.31 5.68 30.65 0.17 -3.14 16 13 C 0.06 2.11 5.10 86.33 0.44 2.55 16 14 N -0.53 -16.81 4.40 -900.92 -3.96 -20.78 16 15 C 0.06 1.98 5.45 85.56 0.47 2.45 16 16 C 0.44 21.19 7.46 87.66 0.65 21.85 16 17 O -0.61 -34.18 13.90 -3.06 -0.04 -34.23 16 18 N -0.58 -29.87 5.29 -306.97 -1.62 -31.49 16 19 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 22 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 23 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.05 1.14 5.46 86.33 0.47 1.61 16 28 C -0.11 -1.80 5.57 30.65 0.17 -1.63 16 29 C -0.13 -1.20 6.13 31.90 0.20 -1.00 16 30 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.11 7.70 -2.39 -0.02 1.09 16 35 H 0.42 3.93 8.60 -92.71 -0.80 3.14 16 36 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 2.72 5.78 -2.39 -0.01 2.70 16 41 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 42 H 0.12 3.42 7.99 -2.39 -0.02 3.40 16 43 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 44 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 1.79 8.02 -2.39 -0.02 1.77 16 47 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.12 0.27 8.14 -2.39 -0.02 0.26 16 50 H 0.07 0.86 7.78 -2.39 -0.02 0.84 16 Total: -1.00 -81.03 399.81 -1.46 -82.49 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.58 Total: 32.13 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 5.85 Total: 21.18 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -7.55 Total: -116.62 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -1.21 Total: -64.79 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -81.03 -1.46 -82.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228359665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.782 kcal (2) G-P(sol) polarization free energy of solvation -81.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds