Wall clock time and date at job start Tue Mar 31 2020 23:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99135 * 2 1 4 4 O 1.43749 * 109.87698 * 121.07624 * 2 1 3 5 5 C 1.44376 * 106.97458 * 145.93704 * 4 2 1 6 6 C 1.54999 * 103.49070 * 319.94503 * 5 4 2 7 7 C 1.54096 * 109.88314 * 238.90980 * 2 1 3 8 8 H 1.08999 * 110.48669 * 119.73675 * 7 2 1 9 9 C 1.50702 * 110.48399 * 357.22315 * 7 2 1 10 10 O 1.21280 * 120.00126 * 274.78669 * 9 7 2 11 11 N 1.34784 * 120.00063 * 94.78524 * 9 7 2 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 7 13 13 C 1.53099 * 109.57574 * 274.70895 * 12 11 9 14 14 C 1.53031 * 109.29133 * 182.40387 * 13 12 11 15 15 N 1.46845 * 109.51577 * 59.18641 * 14 13 12 16 16 C 1.46896 * 111.00330 * 174.17074 * 15 14 13 17 17 C 1.50709 * 109.47015 * 293.47915 * 16 15 14 18 18 O 1.21299 * 119.99600 * 353.94528 * 17 16 15 19 19 N 1.34771 * 120.00219 * 173.94243 * 17 16 15 20 20 C 1.37093 * 120.00179 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00518 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99558 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00487 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46911 * 59.99843 * 24 22 20 26 26 H 1.48492 * 109.47244 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46892 * 300.00202 * 24 22 20 28 28 C 1.46854 * 111.19686 * 298.26143 * 15 14 13 29 29 C 1.53038 * 109.51762 * 61.74347 * 28 15 14 30 30 H 1.09002 * 109.47229 * 185.91177 * 1 2 3 31 31 H 1.08998 * 109.47137 * 305.91457 * 1 2 3 32 32 H 1.09003 * 109.46735 * 65.91191 * 1 2 3 33 33 H 1.09001 * 110.61993 * 78.44013 * 5 4 2 34 34 H 1.09004 * 110.62046 * 201.28814 * 5 4 2 35 35 H 1.09007 * 110.90534 * 278.82095 * 6 5 4 36 36 H 1.09004 * 110.90928 * 155.22281 * 6 5 4 37 37 H 0.97004 * 119.99332 * 359.97438 * 11 9 7 38 38 H 1.08993 * 109.52213 * 34.86856 * 12 11 9 39 39 H 1.08997 * 109.49024 * 62.46313 * 13 12 11 40 40 H 1.08998 * 109.50785 * 302.35649 * 13 12 11 41 41 H 1.08998 * 109.46293 * 299.17131 * 14 13 12 42 42 H 1.09005 * 109.46735 * 179.19620 * 14 13 12 43 43 H 1.08997 * 109.47527 * 53.47623 * 16 15 14 44 44 H 1.09000 * 109.47373 * 173.48019 * 16 15 14 45 45 H 0.97004 * 120.00037 * 0.02562 * 19 17 16 46 46 H 0.96996 * 119.99800 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46247 * 181.75353 * 28 15 14 48 48 H 1.09001 * 109.46073 * 301.73814 * 28 15 14 49 49 H 1.08995 * 109.50782 * 60.76407 * 29 28 15 50 50 H 1.09002 * 109.49955 * 180.84289 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2378 -1.3641 0.7650 6 6 2.9195 -1.8915 -0.6573 7 6 2.0541 -0.7483 -1.2409 8 1 2.6601 -0.0854 -1.8585 9 6 0.9074 -1.3106 -2.0410 10 8 0.4369 -2.3900 -1.7504 11 7 0.4047 -0.6139 -3.0795 12 6 -0.7103 -1.1603 -3.8570 13 6 -0.1694 -2.0927 -4.9441 14 6 -1.3342 -2.6125 -5.7898 15 7 -2.0416 -1.4793 -6.3995 16 6 -3.0801 -1.9451 -7.3282 17 6 -2.4319 -2.6258 -8.5062 18 8 -1.2244 -2.6183 -8.6220 19 7 -3.1937 -3.2429 -9.4310 20 6 -2.6040 -3.8626 -10.5023 21 1 -1.5289 -3.8559 -10.6054 22 6 -3.3894 -4.4984 -11.4560 23 7 -4.6975 -4.5062 -11.3308 24 14 -2.5858 -5.3434 -12.9154 25 1 -1.6762 -6.4119 -12.4294 26 1 -3.6344 -5.9408 -13.7805 27 1 -1.8078 -4.3486 -13.6966 28 6 -2.6107 -0.5949 -5.3745 29 6 -1.4838 -0.0152 -4.5165 30 1 -0.3634 -1.0222 0.1058 31 1 -0.3633 0.6028 0.8323 32 1 -0.3633 0.4195 -0.9382 33 1 4.0684 -0.6588 0.7358 34 1 3.4598 -2.1890 1.4420 35 1 2.3539 -2.8221 -0.6096 36 1 3.8332 -2.0225 -1.2372 37 1 0.7808 0.2496 -3.3117 38 1 -1.3758 -1.7171 -3.1975 39 1 0.3460 -2.9330 -4.4791 40 1 0.5262 -1.5453 -5.5801 41 1 -2.0222 -3.1716 -5.1557 42 1 -0.9508 -3.2656 -6.5738 43 1 -3.7354 -2.6501 -6.8167 44 1 -3.6642 -1.0935 -7.6770 45 1 -4.1593 -3.2487 -9.3386 46 1 -5.2458 -4.9497 -11.9968 47 1 -3.1545 0.2173 -5.8569 48 1 -3.2927 -1.1635 -4.7423 49 1 -0.8089 0.5650 -5.1458 50 1 -1.9077 0.6294 -3.7464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229732665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:05 Heat of formation + Delta-G solvation = -117.005481 kcal Electronic energy + Delta-G solvation = -30029.345817 eV Core-core repulsion = 25863.195387 eV Total energy + Delta-G solvation = -4166.150429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02186 -39.46543 -38.54511 -37.47704 -35.03278 -33.84857 -33.05750 -31.88594 -31.47932 -31.09207 -30.74226 -27.41609 -26.54417 -24.63082 -23.31145 -23.14533 -22.56661 -21.87550 -20.35566 -19.57446 -19.16216 -17.84901 -17.52043 -17.04775 -16.41950 -16.10668 -15.93351 -15.55595 -15.23002 -15.04024 -14.87664 -14.55589 -14.07515 -13.98526 -13.77366 -13.50590 -13.37985 -13.16861 -13.05860 -12.70995 -12.62459 -12.42026 -12.28621 -11.90753 -11.73806 -11.59061 -11.49072 -11.38747 -11.29059 -11.18775 -11.11685 -11.03747 -10.66471 -10.54102 -10.43527 -10.23559 -10.19934 -9.83210 -9.46663 -9.15323 -8.43043 -7.96254 -7.85579 -6.40495 -3.81227 2.35925 2.87938 3.20664 3.26274 3.30561 3.42872 3.92380 3.97370 4.01548 4.23643 4.24703 4.41082 4.60235 4.66155 4.77319 4.84101 4.88297 4.94263 5.02880 5.06942 5.09772 5.19151 5.26047 5.31945 5.34596 5.42467 5.46104 5.53557 5.57019 5.61664 5.67803 5.75331 5.80182 5.81940 5.87303 5.96497 5.99986 6.09013 6.23006 6.31118 6.44840 6.47707 6.48959 7.24485 7.31076 7.40964 7.56042 8.00950 8.07543 8.63401 9.19423 9.56097 10.08139 10.77217 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.001927 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.238618 B =14525.751650 C =15163.820966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.077 0.923 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.146 4.146 8 H 0.102 0.898 9 C 0.529 3.471 10 O -0.532 6.532 11 N -0.725 5.725 12 C 0.143 3.857 13 C -0.119 4.119 14 C 0.059 3.941 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.058 3.942 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.078 0.922 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 11.669 21.824 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.095 0.905 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.168 4.168 8 H 0.120 0.880 9 C 0.315 3.685 10 O -0.408 6.408 11 N -0.375 5.375 12 C 0.039 3.961 13 C -0.158 4.158 14 C -0.070 4.070 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.071 4.071 29 C -0.158 4.158 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.111 11.063 21.764 26.425 hybrid contribution -0.595 -0.407 -0.718 1.017 sum 9.516 10.657 21.046 25.437 Atomic orbital electron populations 1.22133 0.93391 1.04118 1.02628 1.22567 0.95588 0.95070 0.83386 0.90505 1.88918 1.39800 1.67648 1.32505 1.23559 0.87499 0.96480 0.95285 1.23172 0.99886 0.99078 0.95981 1.22838 0.96602 0.99419 0.97891 0.87981 1.20088 0.83701 0.84913 0.79826 1.90716 1.60491 1.21184 1.68406 1.46183 1.36402 1.23121 1.31808 1.21119 0.87516 0.95085 0.92384 1.21899 0.98638 0.99190 0.96108 1.22128 0.94745 0.92511 0.97572 1.61533 1.26909 1.19015 1.16549 1.21843 0.93063 0.99621 0.93970 1.19755 0.87941 0.84267 0.85198 1.90504 1.14079 1.63740 1.77729 1.41873 1.09076 1.47889 1.21354 1.19637 0.94082 1.29549 0.99528 0.88001 1.25259 0.95318 0.98026 0.99391 1.69605 1.03682 1.44377 1.36712 0.85920 0.78374 0.79432 0.80504 1.19937 1.21008 1.19922 1.22025 0.95201 0.96907 0.92925 1.21831 0.98145 0.97193 0.98643 0.90744 0.91526 0.90961 0.92001 0.88563 0.88375 0.89695 0.76688 0.89769 0.91472 0.90693 0.95714 0.88166 0.93531 0.89262 0.77513 0.91854 0.90266 0.94978 0.90323 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.41 37.16 0.31 -1.10 16 2 C 0.09 0.73 4.05 -26.16 -0.11 0.63 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 O -0.37 -3.65 11.19 -35.23 -0.39 -4.04 16 5 C 0.05 0.34 7.72 38.21 0.29 0.64 16 6 C -0.14 -1.12 6.65 -24.73 -0.16 -1.29 16 7 C -0.15 -1.12 3.43 -90.25 -0.31 -1.43 16 8 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 9 C 0.53 5.53 4.73 -10.98 -0.05 5.48 16 10 O -0.53 -7.77 14.71 5.56 0.08 -7.69 16 11 N -0.72 -6.45 4.57 -53.70 -0.25 -6.69 16 12 C 0.14 1.60 2.52 -67.82 -0.17 1.42 16 13 C -0.12 -1.66 5.67 -26.66 -0.15 -1.81 16 14 C 0.06 0.97 5.12 -3.84 -0.02 0.95 16 15 N -0.52 -8.33 4.35 -236.11 -1.03 -9.36 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.38 7.32 -10.98 -0.08 10.30 16 18 O -0.58 -15.40 14.28 5.54 0.08 -15.32 16 19 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 20 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 29 C -0.12 -1.17 5.57 -26.65 -0.15 -1.32 16 30 H 0.07 0.83 7.19 -51.93 -0.37 0.46 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.54 6.96 -51.93 -0.36 0.18 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.01 6.92 -51.92 -0.36 0.65 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 2.44 8.61 -40.82 -0.35 2.09 16 38 H 0.08 1.08 7.58 -51.93 -0.39 0.69 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 2.02 6.06 -51.93 -0.31 1.71 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.09 1.41 7.97 -51.93 -0.41 0.99 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 48 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -33.63 394.06 -9.12 -42.75 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.31 Total: 10.55 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.88 Total: 5.97 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.60 Total: -54.23 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.23 Total: -27.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.63 -9.12 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.258 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds