Wall clock time and date at job start Tue Mar 31 2020 23:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99135 * 2 1 4 4 O 1.43749 * 109.87698 * 121.07624 * 2 1 3 5 5 C 1.44376 * 106.97458 * 145.93704 * 4 2 1 6 6 C 1.54999 * 103.49070 * 319.94503 * 5 4 2 7 7 C 1.54096 * 109.88314 * 238.90980 * 2 1 3 8 8 H 1.08999 * 110.48669 * 119.73675 * 7 2 1 9 9 C 1.50702 * 110.48399 * 357.22315 * 7 2 1 10 10 O 1.21280 * 120.00126 * 274.78669 * 9 7 2 11 11 N 1.34784 * 120.00063 * 94.78524 * 9 7 2 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 7 13 13 C 1.53099 * 109.57574 * 274.70895 * 12 11 9 14 14 C 1.53031 * 109.29133 * 182.40387 * 13 12 11 15 15 N 1.46845 * 109.51577 * 59.18641 * 14 13 12 16 16 C 1.46896 * 111.00330 * 174.17074 * 15 14 13 17 17 C 1.50709 * 109.47015 * 293.47915 * 16 15 14 18 18 O 1.21299 * 119.99600 * 353.94528 * 17 16 15 19 19 N 1.34771 * 120.00219 * 173.94243 * 17 16 15 20 20 C 1.37093 * 120.00179 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00518 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99558 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00487 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46911 * 59.99843 * 24 22 20 26 26 H 1.48492 * 109.47244 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46892 * 300.00202 * 24 22 20 28 28 C 1.46854 * 111.19686 * 298.26143 * 15 14 13 29 29 C 1.53038 * 109.51762 * 61.74347 * 28 15 14 30 30 H 1.09002 * 109.47229 * 185.91177 * 1 2 3 31 31 H 1.08998 * 109.47137 * 305.91457 * 1 2 3 32 32 H 1.09003 * 109.46735 * 65.91191 * 1 2 3 33 33 H 1.09001 * 110.61993 * 78.44013 * 5 4 2 34 34 H 1.09004 * 110.62046 * 201.28814 * 5 4 2 35 35 H 1.09007 * 110.90534 * 278.82095 * 6 5 4 36 36 H 1.09004 * 110.90928 * 155.22281 * 6 5 4 37 37 H 0.97004 * 119.99332 * 359.97438 * 11 9 7 38 38 H 1.08993 * 109.52213 * 34.86856 * 12 11 9 39 39 H 1.08997 * 109.49024 * 62.46313 * 13 12 11 40 40 H 1.08998 * 109.50785 * 302.35649 * 13 12 11 41 41 H 1.08998 * 109.46293 * 299.17131 * 14 13 12 42 42 H 1.09005 * 109.46735 * 179.19620 * 14 13 12 43 43 H 1.08997 * 109.47527 * 53.47623 * 16 15 14 44 44 H 1.09000 * 109.47373 * 173.48019 * 16 15 14 45 45 H 0.97004 * 120.00037 * 0.02562 * 19 17 16 46 46 H 0.96996 * 119.99800 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46247 * 181.75353 * 28 15 14 48 48 H 1.09001 * 109.46073 * 301.73814 * 28 15 14 49 49 H 1.08995 * 109.50782 * 60.76407 * 29 28 15 50 50 H 1.09002 * 109.49955 * 180.84289 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2378 -1.3641 0.7650 6 6 2.9195 -1.8915 -0.6573 7 6 2.0541 -0.7483 -1.2409 8 1 2.6601 -0.0854 -1.8585 9 6 0.9074 -1.3106 -2.0410 10 8 0.4369 -2.3900 -1.7504 11 7 0.4047 -0.6139 -3.0795 12 6 -0.7103 -1.1603 -3.8570 13 6 -0.1694 -2.0927 -4.9441 14 6 -1.3342 -2.6125 -5.7898 15 7 -2.0416 -1.4793 -6.3995 16 6 -3.0801 -1.9451 -7.3282 17 6 -2.4319 -2.6258 -8.5062 18 8 -1.2244 -2.6183 -8.6220 19 7 -3.1937 -3.2429 -9.4310 20 6 -2.6040 -3.8626 -10.5023 21 1 -1.5289 -3.8559 -10.6054 22 6 -3.3894 -4.4984 -11.4560 23 7 -4.6975 -4.5062 -11.3308 24 14 -2.5858 -5.3434 -12.9154 25 1 -1.6762 -6.4119 -12.4294 26 1 -3.6344 -5.9408 -13.7805 27 1 -1.8078 -4.3486 -13.6966 28 6 -2.6107 -0.5949 -5.3745 29 6 -1.4838 -0.0152 -4.5165 30 1 -0.3634 -1.0222 0.1058 31 1 -0.3633 0.6028 0.8323 32 1 -0.3633 0.4195 -0.9382 33 1 4.0684 -0.6588 0.7358 34 1 3.4598 -2.1890 1.4420 35 1 2.3539 -2.8221 -0.6096 36 1 3.8332 -2.0225 -1.2372 37 1 0.7808 0.2496 -3.3117 38 1 -1.3758 -1.7171 -3.1975 39 1 0.3460 -2.9330 -4.4791 40 1 0.5262 -1.5453 -5.5801 41 1 -2.0222 -3.1716 -5.1557 42 1 -0.9508 -3.2656 -6.5738 43 1 -3.7354 -2.6501 -6.8167 44 1 -3.6642 -1.0935 -7.6770 45 1 -4.1593 -3.2487 -9.3386 46 1 -5.2458 -4.9497 -11.9968 47 1 -3.1545 0.2173 -5.8569 48 1 -3.2927 -1.1635 -4.7423 49 1 -0.8089 0.5650 -5.1458 50 1 -1.9077 0.6294 -3.7464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229732665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:04 Heat of formation + Delta-G solvation = -143.417623 kcal Electronic energy + Delta-G solvation = -30030.491133 eV Core-core repulsion = 25863.195387 eV Total energy + Delta-G solvation = -4167.295746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78612 -40.67308 -39.73755 -38.81021 -36.23566 -35.72657 -33.84428 -33.27639 -32.52260 -32.27652 -31.83666 -28.77436 -27.37898 -26.32014 -24.39599 -24.24377 -23.15312 -22.78230 -21.30899 -20.98737 -20.44902 -19.87016 -18.22875 -17.87031 -17.60794 -17.26698 -16.79555 -16.63874 -16.43835 -16.35374 -15.97364 -15.86377 -15.53236 -15.33048 -15.07136 -14.72402 -14.46594 -14.37784 -13.81200 -13.76926 -13.49774 -13.40636 -13.30993 -13.21265 -13.05995 -12.95314 -12.78178 -12.44038 -12.33838 -12.23192 -12.19623 -12.12315 -11.98219 -11.87690 -11.81059 -11.56644 -11.43793 -10.97965 -10.56428 -10.29697 -10.06212 -9.97730 -9.21421 -8.45893 -5.94367 1.39387 1.40874 1.51843 1.55552 2.07025 2.10262 2.28457 2.75799 2.86733 3.20907 3.38190 3.39498 3.59866 3.73453 3.85415 3.87552 4.05932 4.09307 4.19059 4.22468 4.27838 4.30091 4.35633 4.36216 4.46637 4.52737 4.54160 4.56390 4.61719 4.64540 4.74066 4.82560 4.89244 4.92134 4.95689 4.97934 5.06378 5.11779 5.12733 5.19103 5.30731 5.41005 5.50643 5.88365 5.91890 6.07203 6.23720 6.56391 6.61833 7.13882 7.25563 7.57950 8.14039 8.71305 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.001927 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.238618 B =14525.751650 C =15163.820966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 H 0.108 0.892 4 O -0.399 6.399 5 C 0.048 3.952 6 C -0.146 4.146 7 C -0.141 4.141 8 H 0.139 0.861 9 C 0.526 3.474 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.152 3.848 13 C -0.110 4.110 14 C 0.063 3.937 15 N -0.529 5.529 16 C 0.057 3.943 17 C 0.440 3.560 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.054 3.946 29 C -0.109 4.109 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.026 0.974 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.099 0.901 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 14.179 22.444 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.126 0.874 4 O -0.318 6.318 5 C -0.028 4.028 6 C -0.184 4.184 7 C -0.162 4.162 8 H 0.157 0.843 9 C 0.314 3.686 10 O -0.459 6.459 11 N -0.361 5.361 12 C 0.047 3.953 13 C -0.149 4.149 14 C -0.065 4.065 15 N -0.254 5.254 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.074 4.074 29 C -0.147 4.147 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.117 0.883 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.523 13.622 22.395 28.246 hybrid contribution -0.714 -1.201 -0.859 1.640 sum 9.810 12.421 21.536 26.727 Atomic orbital electron populations 1.22117 0.94349 1.02067 1.03539 1.22756 0.94947 0.96309 0.82773 0.87404 1.88887 1.41056 1.68222 1.33676 1.23713 0.87380 0.97116 0.94599 1.23167 1.00290 0.97802 0.97170 1.22928 0.95624 0.99752 0.97930 0.84295 1.20655 0.83909 0.84236 0.79824 1.90705 1.62041 1.23478 1.69715 1.46007 1.35621 1.23591 1.30914 1.20864 0.87916 0.95214 0.91271 1.21767 0.97420 0.99234 0.96445 1.21943 0.95675 0.92548 0.96365 1.61518 1.27061 1.18893 1.17926 1.21741 0.93199 1.00383 0.92081 1.20820 0.87582 0.82989 0.85842 1.90477 1.15997 1.64743 1.78735 1.41948 1.09308 1.48550 1.21553 1.19601 0.93382 1.31670 1.01442 0.90386 1.26036 0.95890 0.98049 1.01456 1.69668 1.04454 1.44541 1.37535 0.84997 0.77760 0.78298 0.77334 1.19887 1.19503 1.19620 1.22222 0.96253 0.96569 0.92336 1.21800 0.97380 0.96547 0.99021 0.94206 0.90855 0.89782 0.89332 0.88345 0.91753 0.87719 0.74515 0.91417 0.93094 0.91344 0.95605 0.92728 0.92027 0.86533 0.77074 0.91356 0.88255 0.94251 0.89711 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.41 71.98 0.61 -1.98 16 2 C 0.09 1.22 4.05 30.96 0.13 1.35 16 3 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 4 O -0.40 -7.36 11.19 -148.98 -1.67 -9.02 16 5 C 0.05 0.60 7.72 72.67 0.56 1.16 16 6 C -0.15 -2.15 6.65 31.89 0.21 -1.93 16 7 C -0.14 -1.85 3.43 -10.55 -0.04 -1.89 16 8 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 9 C 0.53 10.55 4.73 87.66 0.41 10.96 16 10 O -0.58 -17.55 14.71 -3.03 -0.04 -17.59 16 11 N -0.71 -11.23 4.57 -442.19 -2.02 -13.25 16 12 C 0.15 3.20 2.52 45.06 0.11 3.32 16 13 C -0.11 -3.10 5.67 30.64 0.17 -2.93 16 14 C 0.06 2.15 5.12 86.32 0.44 2.59 16 15 N -0.53 -16.63 4.35 -900.92 -3.91 -20.55 16 16 C 0.06 1.97 5.45 85.56 0.47 2.44 16 17 C 0.44 21.11 7.32 87.66 0.64 21.75 16 18 O -0.61 -34.06 14.28 -3.09 -0.04 -34.10 16 19 N -0.58 -29.84 5.29 -306.98 -1.62 -31.47 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 24 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.05 1.14 5.46 86.32 0.47 1.61 16 29 C -0.11 -1.79 5.57 30.65 0.17 -1.62 16 30 H 0.04 0.91 7.19 -2.39 -0.02 0.89 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.07 6.96 -2.39 -0.02 1.05 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.06 1.40 6.92 -2.38 -0.02 1.38 16 36 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.42 3.64 8.61 -92.71 -0.80 2.84 16 38 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 2.34 6.06 -2.38 -0.01 2.33 16 43 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.12 3.41 7.97 -2.39 -0.02 3.39 16 45 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.10 1.77 8.01 -2.39 -0.02 1.75 16 48 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.56 394.06 -1.93 -79.50 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.57 Total: 34.57 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.64 Total: 16.34 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -7.27 Total: -115.11 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -1.76 Total: -60.72 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.56 -1.93 -79.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229732665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.921 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds