Wall clock time and date at job start Tue Mar 31 2020 23:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34630 * 117.00667 * 2 1 4 4 O 1.21516 * 119.99698 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00194 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99684 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46898 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00310 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.47574 * 125.62752 * 0.02562 * 9 7 6 11 11 C 1.54122 * 104.78337 * 203.32014 * 10 9 7 12 12 C 1.54394 * 102.47487 * 323.92055 * 11 10 9 13 13 C 1.47077 * 125.62741 * 180.02562 * 9 7 6 14 14 H 1.08995 * 109.88327 * 59.58599 * 13 9 7 15 15 C 1.53008 * 110.00077 * 298.50311 * 13 9 7 16 16 C 1.52109 * 110.69560 * 206.06994 * 11 10 9 17 17 C 1.53345 * 109.44686 * 176.93690 * 16 11 10 18 18 N 1.46932 * 108.68474 * 53.29576 * 17 16 11 19 19 C 1.36944 * 120.54701 * 125.65201 * 18 17 16 20 20 H 1.07996 * 120.00249 * 332.01157 * 19 18 17 21 21 C 1.38818 * 119.99692 * 152.01964 * 19 18 17 22 22 N 1.31613 * 119.99980 * 144.20845 * 21 19 18 23 23 Si 1.86802 * 119.99698 * 324.20289 * 21 19 18 24 24 H 1.48498 * 109.46836 * 270.00339 * 23 21 19 25 25 H 1.48500 * 109.47153 * 30.00543 * 23 21 19 26 26 H 1.48501 * 109.46884 * 150.00104 * 23 21 19 27 27 C 1.46925 * 118.89496 * 305.92496 * 18 17 16 28 28 C 1.52097 * 110.69200 * 81.77551 * 11 10 9 29 29 H 1.08997 * 109.47701 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46637 * 300.00112 * 1 2 3 31 31 H 1.09002 * 109.46733 * 59.99809 * 1 2 3 32 32 H 0.96994 * 120.00185 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47622 * 60.00612 * 6 5 3 34 34 H 1.09002 * 109.47962 * 300.00160 * 6 5 3 35 35 H 1.08994 * 110.37679 * 84.49084 * 10 9 7 36 36 H 1.08998 * 110.37279 * 322.14373 * 10 9 7 37 37 H 1.09002 * 110.72976 * 152.98476 * 12 11 10 38 38 H 1.08996 * 110.73759 * 276.29308 * 12 11 10 39 39 H 1.08990 * 109.47215 * 302.09160 * 15 13 9 40 40 H 1.08999 * 109.46732 * 62.09752 * 15 13 9 41 41 H 1.09006 * 109.46831 * 182.08975 * 15 13 9 42 42 H 1.09003 * 109.47433 * 56.94653 * 16 11 10 43 43 H 1.08999 * 109.47891 * 296.93680 * 16 11 10 44 44 H 1.08997 * 109.60037 * 293.53948 * 17 16 11 45 45 H 1.08996 * 109.73176 * 173.13333 * 17 16 11 46 46 H 0.97001 * 120.00162 * 354.89765 * 22 21 19 47 47 H 1.09005 * 109.59694 * 173.83757 * 27 18 17 48 48 H 1.09002 * 109.60006 * 294.30821 * 27 18 17 49 49 H 1.09000 * 109.47661 * 303.05332 * 28 11 10 50 50 H 1.09008 * 109.47607 * 63.06381 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2699 0.0005 6 6 4.0744 2.5752 0.0000 7 6 5.5684 2.3776 0.0001 8 8 6.0319 1.2570 0.0001 9 7 6.3895 3.4465 0.0001 10 6 5.9620 4.8589 0.0006 11 6 7.1577 5.6319 -0.5894 12 6 8.3675 4.8560 -0.0254 13 6 7.8595 3.3976 -0.0003 14 1 8.2125 2.8669 -0.8844 15 6 8.3601 2.6941 1.2629 16 6 7.1672 7.0692 -0.0914 17 6 8.4079 7.7891 -0.6335 18 7 8.4437 7.6305 -2.0938 19 6 8.5315 8.7259 -2.9109 20 1 8.1360 9.6763 -2.5844 21 6 9.1287 8.6146 -4.1591 22 7 8.6602 9.3053 -5.1767 23 14 10.5975 7.4845 -4.3942 24 1 11.8496 8.2404 -4.1376 25 1 10.5031 6.3462 -3.4453 26 1 10.6071 6.9686 -5.7867 27 6 8.3777 6.2775 -2.6628 28 6 7.1434 5.5658 -2.1089 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9375 0.4564 0.0005 33 1 3.7813 3.1328 0.8895 34 1 3.7820 3.1318 -0.8905 35 1 5.7585 5.1935 1.0178 36 1 5.0798 4.9886 -0.6261 37 1 9.2297 4.9529 -0.6853 38 1 8.6101 5.1976 0.9808 39 1 7.9889 3.2195 2.1427 40 1 7.9980 1.6660 1.2739 41 1 9.4501 2.6955 1.2718 42 1 7.1902 7.0760 0.9984 43 1 6.2695 7.5803 -0.4391 44 1 9.3051 7.3512 -0.1960 45 1 8.3580 8.8484 -0.3818 46 1 7.8539 9.8345 -5.0736 47 1 8.3051 6.3406 -3.7486 48 1 9.2726 5.7202 -2.3857 49 1 7.1498 4.5234 -2.4273 50 1 6.2452 6.0553 -2.4855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263934351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:48 Heat of formation + Delta-G solvation = -86.065762 kcal Electronic energy + Delta-G solvation = -30940.118610 eV Core-core repulsion = 26775.309827 eV Total energy + Delta-G solvation = -4164.808783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05012 -40.55396 -38.94260 -36.97041 -36.30934 -34.88669 -33.29273 -32.20448 -31.22154 -30.51503 -28.94580 -27.48051 -26.87860 -26.19451 -23.65729 -22.96759 -22.30265 -21.43448 -20.96496 -19.83861 -18.82756 -18.45647 -17.43964 -17.09188 -17.00304 -16.73229 -16.32172 -15.80224 -15.15689 -14.94670 -14.43094 -14.35138 -14.15464 -14.06927 -13.91236 -13.70460 -13.37309 -13.22239 -13.09343 -12.79192 -12.65382 -12.52601 -12.39524 -12.27932 -11.97519 -11.90957 -11.42841 -11.10974 -11.09496 -10.98538 -10.88026 -10.73461 -10.54505 -10.40679 -10.10870 -9.93894 -9.79198 -9.66367 -9.64526 -9.24756 -8.83037 -8.30188 -7.00682 -6.38108 -3.27304 1.71579 2.27911 2.49457 2.76891 3.48481 3.55426 3.68676 3.94608 4.07097 4.45583 4.63403 4.66973 4.80771 4.80976 4.88661 4.93407 4.94397 4.97083 5.04307 5.15795 5.20878 5.26197 5.39268 5.44465 5.46955 5.55570 5.63415 5.72717 5.82204 5.83294 5.91204 5.98403 6.01234 6.05701 6.13449 6.18869 6.26169 6.35758 6.39783 6.46838 6.63553 6.69122 6.76721 6.97501 7.03527 7.27375 7.80478 7.98206 8.05298 8.44032 9.01167 9.63408 10.22278 11.02145 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002672 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.105848 B =10475.490431 C =11128.194111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.572 6.572 5 N -0.697 5.697 6 C 0.122 3.878 7 C 0.525 3.475 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.055 4.055 12 C -0.121 4.121 13 C 0.137 3.863 14 H 0.078 0.922 15 C -0.160 4.160 16 C -0.118 4.118 17 C 0.146 3.854 18 N -0.597 5.597 19 C -0.362 4.362 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 1.015 2.985 24 H -0.298 1.298 25 H -0.270 1.270 26 H -0.295 1.295 27 C 0.145 3.855 28 C -0.123 4.123 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.267 0.733 47 H 0.065 0.935 48 H 0.031 0.969 49 H 0.053 0.947 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 -16.324 14.128 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.461 6.461 5 N -0.360 5.360 6 C -0.005 4.005 7 C 0.313 3.687 8 O -0.418 6.418 9 N -0.336 5.336 10 C -0.023 4.023 11 C -0.056 4.056 12 C -0.158 4.158 13 C 0.034 3.966 14 H 0.096 0.904 15 C -0.218 4.218 16 C -0.158 4.158 17 C 0.020 3.980 18 N -0.321 5.321 19 C -0.489 4.489 20 H 0.081 0.919 21 C -0.201 4.201 22 N -0.535 5.535 23 Si 0.845 3.155 24 H -0.226 1.226 25 H -0.196 1.196 26 H -0.221 1.221 27 C 0.019 3.981 28 C -0.162 4.162 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.257 0.743 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.882 -16.970 13.009 23.154 hybrid contribution -1.058 0.349 1.074 1.548 sum -9.940 -16.621 14.083 23.946 Atomic orbital electron populations 1.23229 0.74081 1.03591 1.02889 1.86246 1.24386 1.30742 1.87010 1.17955 0.83022 0.82336 0.76394 1.91027 1.64639 1.34795 1.55616 1.44190 1.03300 1.10385 1.78138 1.21006 0.89307 0.84728 1.05419 1.19910 0.87982 0.84033 0.76782 1.90691 1.77099 1.23109 1.50887 1.48522 1.07138 1.06165 1.71748 1.22610 0.98866 0.79619 1.01181 1.20972 0.92844 0.95175 0.96592 1.22837 0.98907 0.91877 1.02202 1.21677 0.78562 0.97514 0.98833 0.90442 1.22125 1.01290 1.01524 0.96894 1.21836 1.01520 0.93733 0.98684 1.20946 0.93493 0.98098 0.85468 1.44296 1.85549 1.02127 1.00163 1.20021 1.38837 0.90832 0.99241 0.91936 1.26118 1.01641 1.00790 0.91505 1.70882 1.22914 1.30161 1.29590 0.84649 0.78325 0.77047 0.75525 1.22617 1.19580 1.22132 1.21308 0.93582 0.85708 0.97489 1.21851 1.01807 0.99710 0.92879 0.87848 0.91751 0.91673 0.74296 0.87976 0.87812 0.90882 0.90260 0.89097 0.90468 0.92617 0.91482 0.91534 0.92561 0.91772 0.96157 0.92371 0.92309 0.91688 0.95187 0.92852 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.74 10.61 -40.30 -0.43 -4.17 16 3 C 0.65 7.70 8.75 54.06 0.47 8.18 16 4 O -0.57 -8.20 16.13 -19.29 -0.31 -8.51 16 5 N -0.70 -7.43 5.53 -66.47 -0.37 -7.80 16 6 C 0.12 1.23 5.17 -5.20 -0.03 1.20 16 7 C 0.53 6.16 7.71 -10.98 -0.08 6.07 16 8 O -0.54 -7.63 14.71 5.56 0.08 -7.54 16 9 N -0.60 -6.81 3.06 -163.26 -0.50 -7.31 16 10 C 0.10 1.06 5.59 -2.87 -0.02 1.04 16 11 C -0.05 -0.72 0.55 -154.11 -0.08 -0.80 16 12 C -0.12 -1.45 4.45 -25.23 -0.11 -1.56 16 13 C 0.14 1.59 3.08 -66.85 -0.21 1.39 16 14 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.16 -1.69 9.10 37.16 0.34 -1.35 16 16 C -0.12 -1.66 4.84 -27.01 -0.13 -1.79 16 17 C 0.15 2.63 6.25 -3.63 -0.02 2.61 16 18 N -0.60 -13.24 2.70 -172.42 -0.47 -13.71 16 19 C -0.36 -9.68 9.70 -15.05 -0.15 -9.82 16 20 H 0.06 1.81 8.06 -52.49 -0.42 1.38 16 21 C 0.00 0.10 4.82 -17.43 -0.08 0.02 16 22 N -0.90 -26.95 13.70 55.49 0.76 -26.19 16 23 Si 1.02 24.54 26.99 -169.99 -4.59 19.95 16 24 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.27 -5.88 4.73 56.52 0.27 -5.61 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.14 2.91 4.02 -3.88 -0.02 2.89 16 28 C -0.12 -1.97 4.83 -27.26 -0.13 -2.10 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.42 4.30 7.55 -40.82 -0.31 3.99 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 35 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 36 H 0.08 0.80 7.39 -51.93 -0.38 0.41 16 37 H 0.09 1.23 6.19 -51.93 -0.32 0.91 16 38 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.66 8.09 -51.93 -0.42 0.23 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.35 7.62 -51.93 -0.40 -0.04 16 45 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 46 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 47 H 0.06 1.47 5.78 -51.93 -0.30 1.17 16 48 H 0.03 0.59 5.05 -51.93 -0.26 0.33 16 49 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 50 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -32.49 385.71 -7.49 -39.98 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.30 Total: 2.08 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 0.82 Total: 7.42 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.57 Total: -55.02 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.66 Total: -20.22 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.59 Total: 19.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.49 -7.49 -39.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263934351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.085 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds