Wall clock time and date at job start Tue Mar 31 2020 23:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34630 * 117.00667 * 2 1 4 4 O 1.21516 * 119.99698 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00194 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99684 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46898 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00310 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.47574 * 125.62752 * 0.02562 * 9 7 6 11 11 C 1.54122 * 104.78337 * 203.32014 * 10 9 7 12 12 C 1.54394 * 102.47487 * 323.92055 * 11 10 9 13 13 C 1.47077 * 125.62741 * 180.02562 * 9 7 6 14 14 H 1.08995 * 109.88327 * 59.58599 * 13 9 7 15 15 C 1.53008 * 110.00077 * 298.50311 * 13 9 7 16 16 C 1.52109 * 110.69560 * 206.06994 * 11 10 9 17 17 C 1.53345 * 109.44686 * 176.93690 * 16 11 10 18 18 N 1.46932 * 108.68474 * 53.29576 * 17 16 11 19 19 C 1.36944 * 120.54701 * 125.65201 * 18 17 16 20 20 H 1.07996 * 120.00249 * 332.01157 * 19 18 17 21 21 C 1.38818 * 119.99692 * 152.01964 * 19 18 17 22 22 N 1.31613 * 119.99980 * 144.20845 * 21 19 18 23 23 Si 1.86802 * 119.99698 * 324.20289 * 21 19 18 24 24 H 1.48498 * 109.46836 * 270.00339 * 23 21 19 25 25 H 1.48500 * 109.47153 * 30.00543 * 23 21 19 26 26 H 1.48501 * 109.46884 * 150.00104 * 23 21 19 27 27 C 1.46925 * 118.89496 * 305.92496 * 18 17 16 28 28 C 1.52097 * 110.69200 * 81.77551 * 11 10 9 29 29 H 1.08997 * 109.47701 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46637 * 300.00112 * 1 2 3 31 31 H 1.09002 * 109.46733 * 59.99809 * 1 2 3 32 32 H 0.96994 * 120.00185 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47622 * 60.00612 * 6 5 3 34 34 H 1.09002 * 109.47962 * 300.00160 * 6 5 3 35 35 H 1.08994 * 110.37679 * 84.49084 * 10 9 7 36 36 H 1.08998 * 110.37279 * 322.14373 * 10 9 7 37 37 H 1.09002 * 110.72976 * 152.98476 * 12 11 10 38 38 H 1.08996 * 110.73759 * 276.29308 * 12 11 10 39 39 H 1.08990 * 109.47215 * 302.09160 * 15 13 9 40 40 H 1.08999 * 109.46732 * 62.09752 * 15 13 9 41 41 H 1.09006 * 109.46831 * 182.08975 * 15 13 9 42 42 H 1.09003 * 109.47433 * 56.94653 * 16 11 10 43 43 H 1.08999 * 109.47891 * 296.93680 * 16 11 10 44 44 H 1.08997 * 109.60037 * 293.53948 * 17 16 11 45 45 H 1.08996 * 109.73176 * 173.13333 * 17 16 11 46 46 H 0.97001 * 120.00162 * 354.89765 * 22 21 19 47 47 H 1.09005 * 109.59694 * 173.83757 * 27 18 17 48 48 H 1.09002 * 109.60006 * 294.30821 * 27 18 17 49 49 H 1.09000 * 109.47661 * 303.05332 * 28 11 10 50 50 H 1.09008 * 109.47607 * 63.06381 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2699 0.0005 6 6 4.0744 2.5752 0.0000 7 6 5.5684 2.3776 0.0001 8 8 6.0319 1.2570 0.0001 9 7 6.3895 3.4465 0.0001 10 6 5.9620 4.8589 0.0006 11 6 7.1577 5.6319 -0.5894 12 6 8.3675 4.8560 -0.0254 13 6 7.8595 3.3976 -0.0003 14 1 8.2125 2.8669 -0.8844 15 6 8.3601 2.6941 1.2629 16 6 7.1672 7.0692 -0.0914 17 6 8.4079 7.7891 -0.6335 18 7 8.4437 7.6305 -2.0938 19 6 8.5315 8.7259 -2.9109 20 1 8.1360 9.6763 -2.5844 21 6 9.1287 8.6146 -4.1591 22 7 8.6602 9.3053 -5.1767 23 14 10.5975 7.4845 -4.3942 24 1 11.8496 8.2404 -4.1376 25 1 10.5031 6.3462 -3.4453 26 1 10.6071 6.9686 -5.7867 27 6 8.3777 6.2775 -2.6628 28 6 7.1434 5.5658 -2.1089 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9375 0.4564 0.0005 33 1 3.7813 3.1328 0.8895 34 1 3.7820 3.1318 -0.8905 35 1 5.7585 5.1935 1.0178 36 1 5.0798 4.9886 -0.6261 37 1 9.2297 4.9529 -0.6853 38 1 8.6101 5.1976 0.9808 39 1 7.9889 3.2195 2.1427 40 1 7.9980 1.6660 1.2739 41 1 9.4501 2.6955 1.2718 42 1 7.1902 7.0760 0.9984 43 1 6.2695 7.5803 -0.4391 44 1 9.3051 7.3512 -0.1960 45 1 8.3580 8.8484 -0.3818 46 1 7.8539 9.8345 -5.0736 47 1 8.3051 6.3406 -3.7486 48 1 9.2726 5.7202 -2.3857 49 1 7.1498 4.5234 -2.4273 50 1 6.2452 6.0553 -2.4855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263934351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:47 Heat of formation + Delta-G solvation = -109.317832 kcal Electronic energy + Delta-G solvation = -30941.126895 eV Core-core repulsion = 26775.309827 eV Total energy + Delta-G solvation = -4165.817068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98483 -41.45949 -40.01524 -37.90090 -37.54920 -35.79350 -34.91744 -33.09511 -32.92609 -31.93143 -29.72266 -28.69276 -27.66633 -27.12121 -25.28008 -24.36080 -23.26639 -22.57673 -22.21973 -20.68779 -20.06984 -19.63941 -18.86762 -18.16881 -17.83060 -17.64631 -17.21647 -16.81800 -16.45444 -16.12665 -15.91769 -15.48501 -15.24797 -15.21596 -14.89942 -14.81238 -14.75657 -14.30486 -14.12418 -13.92717 -13.84731 -13.64480 -13.46181 -13.19346 -13.04352 -12.98166 -12.85118 -12.41284 -12.13302 -12.08069 -11.99490 -11.91080 -11.83564 -11.71424 -11.60072 -11.30248 -11.09830 -11.04730 -10.95715 -10.49831 -10.37764 -9.73252 -8.93673 -8.52773 -5.38239 0.94810 1.39282 1.52807 1.57552 1.60852 1.75532 1.91225 2.62236 2.99453 3.18145 3.23387 3.44179 3.55298 3.72972 3.81465 4.14077 4.17017 4.19352 4.20608 4.28953 4.34117 4.36973 4.43866 4.45649 4.54626 4.61763 4.66532 4.71138 4.75679 4.80946 4.87542 4.91020 4.93391 5.00564 5.08695 5.11986 5.23363 5.26399 5.27066 5.28394 5.32481 5.39495 5.42607 5.61964 5.89839 6.19038 6.32234 6.38632 6.91469 6.96283 7.13483 7.71481 8.19708 8.83372 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002672 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.105848 B =10475.490431 C =11128.194111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.650 3.350 4 O -0.600 6.600 5 N -0.694 5.694 6 C 0.124 3.876 7 C 0.528 3.472 8 O -0.566 6.566 9 N -0.601 5.601 10 C 0.106 3.894 11 C -0.055 4.055 12 C -0.113 4.113 13 C 0.136 3.864 14 H 0.063 0.937 15 C -0.152 4.152 16 C -0.106 4.106 17 C 0.140 3.860 18 N -0.612 5.612 19 C -0.343 4.343 20 H 0.028 0.972 21 C -0.052 4.052 22 N -0.941 5.941 23 Si 1.060 2.940 24 H -0.298 1.298 25 H -0.233 1.233 26 H -0.304 1.304 27 C 0.141 3.859 28 C -0.112 4.112 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.420 0.580 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.043 0.957 46 H 0.252 0.748 47 H 0.033 0.967 48 H 0.043 0.957 49 H 0.064 0.936 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 -18.487 16.860 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.403 3.597 4 O -0.492 6.492 5 N -0.356 5.356 6 C -0.001 4.001 7 C 0.316 3.684 8 O -0.446 6.446 9 N -0.334 5.334 10 C -0.016 4.016 11 C -0.056 4.056 12 C -0.151 4.151 13 C 0.034 3.966 14 H 0.081 0.919 15 C -0.210 4.210 16 C -0.146 4.146 17 C 0.015 3.985 18 N -0.337 5.337 19 C -0.472 4.472 20 H 0.045 0.955 21 C -0.250 4.250 22 N -0.581 5.581 23 Si 0.885 3.115 24 H -0.226 1.226 25 H -0.157 1.157 26 H -0.232 1.232 27 C 0.016 3.984 28 C -0.151 4.151 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.259 0.741 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.014 -19.165 15.796 26.420 hybrid contribution -1.089 1.043 0.277 1.533 sum -10.103 -18.121 16.073 26.245 Atomic orbital electron populations 1.23548 0.72374 1.05773 1.02803 1.86262 1.26081 1.29781 1.86640 1.18078 0.83188 0.82448 0.76012 1.91004 1.65264 1.35797 1.57109 1.44217 1.03049 1.10766 1.77588 1.21057 0.88069 0.84667 1.06356 1.20098 0.88496 0.83616 0.76150 1.90687 1.77633 1.24142 1.52139 1.48523 1.07050 1.06388 1.71396 1.22601 0.97666 0.78638 1.02707 1.20875 0.95105 0.95240 0.94344 1.22783 0.97648 0.91677 1.02942 1.21651 0.78770 0.97270 0.98928 0.91901 1.22045 1.02000 1.00396 0.96555 1.21698 0.98623 0.93449 1.00782 1.21146 0.96298 0.98218 0.82859 1.44392 1.85928 1.01602 1.01793 1.19886 1.36611 0.91137 0.99568 0.95468 1.27151 1.03765 1.02337 0.91701 1.70997 1.23469 1.32755 1.30887 0.84078 0.74953 0.76682 0.75755 1.22618 1.15681 1.23188 1.21327 0.96050 0.85104 0.95914 1.21669 0.98796 0.99409 0.95269 0.84577 0.91686 0.91956 0.74077 0.86411 0.87387 0.88108 0.89525 0.90418 0.88295 0.91571 0.93142 0.90382 0.88699 0.92998 0.94227 0.93851 0.93926 0.94812 0.93923 0.91701 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -7.01 10.61 -55.39 -0.59 -7.60 16 3 C 0.65 14.51 8.75 129.79 1.14 15.64 16 4 O -0.60 -16.48 16.13 19.79 0.32 -16.16 16 5 N -0.69 -13.64 5.53 -594.61 -3.29 -16.93 16 6 C 0.12 2.21 5.17 85.63 0.44 2.65 16 7 C 0.53 11.05 7.71 87.66 0.68 11.73 16 8 O -0.57 -14.99 14.71 -3.01 -0.04 -15.03 16 9 N -0.60 -11.60 3.06 -788.83 -2.41 -14.02 16 10 C 0.11 1.82 5.59 86.55 0.48 2.30 16 11 C -0.05 -1.24 0.55 -51.92 -0.03 -1.27 16 12 C -0.11 -2.26 4.45 31.56 0.14 -2.12 16 13 C 0.14 2.74 3.08 45.38 0.14 2.88 16 14 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.15 -2.70 9.10 71.98 0.66 -2.04 16 16 C -0.11 -2.63 4.84 30.42 0.15 -2.48 16 17 C 0.14 4.73 6.25 86.41 0.54 5.27 16 18 N -0.61 -26.75 2.70 -699.40 -1.89 -28.64 16 19 C -0.34 -18.79 9.70 84.03 0.81 -17.97 16 20 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 21 C -0.05 -2.98 4.82 84.86 0.41 -2.57 16 22 N -0.94 -58.90 13.70 21.65 0.30 -58.61 16 23 Si 1.06 50.28 26.99 68.60 1.85 52.13 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.23 -9.49 4.73 99.48 0.47 -9.02 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 27 C 0.14 5.49 4.02 86.25 0.35 5.83 16 28 C -0.11 -3.39 4.83 30.25 0.15 -3.24 16 29 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.42 8.05 7.55 -92.71 -0.70 7.35 16 33 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.11 1.87 7.86 -2.39 -0.02 1.85 16 35 H 0.10 1.29 7.99 -2.39 -0.02 1.27 16 36 H 0.09 1.42 7.39 -2.39 -0.02 1.40 16 37 H 0.08 1.81 6.19 -2.39 -0.01 1.80 16 38 H 0.10 1.61 7.68 -2.39 -0.02 1.59 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.08 6.90 -2.39 -0.02 1.07 16 41 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 42 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.22 7.62 -2.39 -0.02 1.20 16 45 H 0.04 1.58 7.93 -2.39 -0.02 1.56 16 46 H 0.25 15.89 8.73 -92.71 -0.81 15.08 16 47 H 0.03 1.52 5.78 -2.38 -0.01 1.50 16 48 H 0.04 1.57 5.05 -2.39 -0.01 1.56 16 49 H 0.06 1.81 7.82 -2.39 -0.02 1.79 16 50 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -73.57 385.71 1.46 -72.11 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.03 Total: 16.35 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.25 Total: 16.39 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -7.30 Total: -118.19 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.31 Total: -38.79 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.85 Total: 52.13 kcal Total: -73.57 1.46 -72.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263934351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.206 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds