Wall clock time and date at job start Tue Mar 31 2020 23:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34642 * 116.99905 * 2 1 4 4 O 1.21510 * 119.99536 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99591 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.46933 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00013 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99723 * 179.97438 * 7 6 5 10 10 C 1.47176 * 125.66455 * 359.96159 * 9 7 6 11 11 C 1.53682 * 107.12070 * 181.53902 * 10 9 7 12 12 C 1.54538 * 103.63345 * 21.54726 * 11 10 9 13 13 C 1.47482 * 125.66155 * 180.02562 * 9 7 6 14 14 H 1.09009 * 110.44623 * 274.84255 * 13 9 7 15 15 C 1.52997 * 110.35567 * 37.08269 * 13 9 7 16 16 C 1.52271 * 110.66727 * 263.47269 * 11 10 9 17 17 C 1.53302 * 109.46539 * 296.00449 * 16 11 10 18 18 N 1.46924 * 108.70436 * 306.49778 * 17 16 11 19 19 C 1.36943 * 120.58154 * 234.28839 * 18 17 16 20 20 H 1.08004 * 119.99553 * 152.47104 * 19 18 17 21 21 C 1.38811 * 120.00060 * 332.46917 * 19 18 17 22 22 N 1.31621 * 119.99567 * 159.32697 * 21 19 18 23 23 Si 1.86800 * 120.00011 * 339.33085 * 21 19 18 24 24 H 1.48501 * 109.47121 * 93.27660 * 23 21 19 25 25 H 1.48497 * 109.46750 * 213.27366 * 23 21 19 26 26 H 1.48498 * 109.47212 * 333.27312 * 23 21 19 27 27 C 1.46932 * 118.83746 * 54.31709 * 18 17 16 28 28 C 1.52280 * 110.66650 * 139.61933 * 11 10 9 29 29 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47080 * 299.99476 * 1 2 3 31 31 H 1.08996 * 109.47474 * 60.00272 * 1 2 3 32 32 H 0.96998 * 120.00361 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.46972 * 59.99688 * 6 5 3 34 34 H 1.09004 * 109.46678 * 299.99870 * 6 5 3 35 35 H 1.08997 * 109.90669 * 62.16854 * 10 9 7 36 36 H 1.08999 * 109.90833 * 300.91020 * 10 9 7 37 37 H 1.09001 * 111.01217 * 83.23204 * 12 11 10 38 38 H 1.08994 * 111.01590 * 207.09912 * 12 11 10 39 39 H 1.09006 * 109.47206 * 175.47163 * 15 13 9 40 40 H 1.09001 * 109.47550 * 295.47173 * 15 13 9 41 41 H 1.08999 * 109.47118 * 55.47554 * 15 13 9 42 42 H 1.09000 * 109.47519 * 176.00765 * 16 11 10 43 43 H 1.08994 * 109.47395 * 56.00179 * 16 11 10 44 44 H 1.09002 * 109.60085 * 66.26651 * 17 16 11 45 45 H 1.09002 * 109.59967 * 186.57106 * 17 16 11 46 46 H 0.97001 * 119.99535 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.60317 * 65.44813 * 27 18 17 48 48 H 1.09002 * 109.60086 * 185.76819 * 27 18 17 49 49 H 1.09002 * 109.46446 * 303.99811 * 28 11 10 50 50 H 1.08999 * 109.47564 * 183.99810 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.5682 2.3781 -0.0001 8 8 6.0317 1.2574 -0.0011 9 7 6.3891 3.4470 -0.0001 10 6 5.9635 4.8559 -0.0009 11 6 7.2381 5.7136 -0.0401 12 6 8.3059 4.7533 -0.6110 13 6 7.8632 3.3991 -0.0008 14 1 8.2414 3.3002 1.0168 15 6 8.3575 2.2383 -0.8662 16 6 7.6292 6.1595 1.3623 17 6 6.5360 7.0708 1.9321 18 7 6.2864 8.1602 0.9785 19 6 6.3581 9.4676 1.3799 20 1 6.6173 10.2375 0.6682 21 6 6.0975 9.8031 2.7013 22 7 6.5433 10.9403 3.1917 23 14 5.1141 8.6408 3.7837 24 1 6.0427 7.7506 4.5257 25 1 4.3060 9.4282 4.7491 26 1 4.2120 7.8198 2.9368 27 6 5.9580 7.8225 -0.4133 28 6 7.0548 6.9065 -0.9686 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9375 0.4567 -0.0005 33 1 3.7816 3.1319 0.8905 34 1 3.7809 3.1331 -0.8895 35 1 5.3977 5.0732 0.9050 36 1 5.3526 5.0586 -0.8806 37 1 8.2628 4.7238 -1.6998 38 1 9.3031 5.0293 -0.2684 39 1 9.4458 2.2644 -0.9220 40 1 8.0389 1.2942 -0.4244 41 1 7.9401 2.3293 -1.8690 42 1 8.5718 6.7052 1.3205 43 1 7.7437 5.2851 2.0029 44 1 5.6212 6.4966 2.0790 45 1 6.8650 7.4844 2.8855 46 1 6.3609 11.1750 4.1150 47 1 4.9986 7.3064 -0.4477 48 1 5.9042 8.7344 -1.0079 49 1 6.7673 6.5548 -1.9595 50 1 7.9908 7.4608 -1.0373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263934352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:51 Heat of formation + Delta-G solvation = -82.177437 kcal Electronic energy + Delta-G solvation = -31210.119043 eV Core-core repulsion = 27045.478871 eV Total energy + Delta-G solvation = -4164.640172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04855 -40.52907 -38.94786 -36.94922 -36.33298 -34.84740 -33.28622 -32.27865 -31.18778 -30.60239 -28.90058 -27.60372 -27.01815 -25.81509 -24.21514 -23.00290 -22.37655 -21.51606 -20.89017 -19.88697 -19.00531 -18.31253 -17.30738 -16.99332 -16.83857 -16.58705 -16.28262 -15.75605 -15.40373 -15.04625 -14.52334 -14.32120 -14.14175 -13.94056 -13.85100 -13.79301 -13.56507 -13.14338 -13.07470 -12.77405 -12.56531 -12.35804 -12.31828 -12.20124 -12.02070 -11.88003 -11.76088 -11.29677 -11.05860 -11.02853 -10.92298 -10.89867 -10.69958 -10.54302 -10.16233 -9.90619 -9.82685 -9.66514 -9.61221 -9.46084 -8.81896 -8.64041 -7.01031 -5.98384 -3.34399 1.75602 2.29539 2.54568 2.78988 3.28350 3.46562 3.47734 3.98936 4.08960 4.44292 4.49372 4.65226 4.74652 4.85130 4.89200 4.92821 4.98720 5.03541 5.05644 5.18944 5.20041 5.23743 5.34714 5.42453 5.50851 5.57904 5.66026 5.73181 5.76287 5.79364 5.84746 5.96772 6.02202 6.04540 6.05684 6.11631 6.26440 6.31933 6.34418 6.40927 6.58554 6.60309 6.61653 6.86703 7.08260 7.29195 7.82876 7.92685 8.03415 8.29571 8.90506 9.68596 10.05491 11.17637 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.003444 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.368656 B = 8126.995572 C = 9908.333293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.569 6.569 5 N -0.697 5.697 6 C 0.120 3.880 7 C 0.527 3.473 8 O -0.540 6.540 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.055 4.055 12 C -0.122 4.122 13 C 0.135 3.865 14 H 0.078 0.922 15 C -0.161 4.161 16 C -0.121 4.121 17 C 0.125 3.875 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.908 5.908 23 Si 0.881 3.119 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.146 3.854 28 C -0.119 4.119 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.263 0.737 47 H 0.023 0.977 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 -20.712 -8.961 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.458 6.458 5 N -0.360 5.360 6 C -0.006 4.006 7 C 0.315 3.685 8 O -0.418 6.418 9 N -0.338 5.338 10 C -0.023 4.023 11 C -0.056 4.056 12 C -0.160 4.160 13 C 0.033 3.967 14 H 0.096 0.904 15 C -0.218 4.218 16 C -0.160 4.160 17 C -0.001 4.001 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.175 4.175 22 N -0.551 5.551 23 Si 0.711 3.289 24 H -0.217 1.217 25 H -0.231 1.231 26 H -0.195 1.195 27 C 0.020 3.980 28 C -0.159 4.159 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.870 -20.745 -8.828 22.727 hybrid contribution -0.508 -0.707 0.824 1.199 sum -3.378 -21.452 -8.003 23.144 Atomic orbital electron populations 1.23225 0.74110 1.03540 1.02929 1.86242 1.24368 1.30769 1.87066 1.17968 0.83042 0.82340 0.76474 1.91042 1.64589 1.34771 1.55404 1.44177 1.03281 1.10322 1.78230 1.21023 0.89306 0.84702 1.05600 1.19889 0.87975 0.83973 0.76644 1.90650 1.76822 1.23174 1.51201 1.48567 1.07160 1.06270 1.71840 1.22421 0.98221 0.78925 1.02742 1.20939 0.92876 0.94419 0.97340 1.22976 0.99471 0.92932 1.00641 1.21995 0.78690 0.96159 0.99843 0.90396 1.22135 1.00619 0.99381 0.99711 1.21949 1.01107 0.99089 0.93902 1.21379 0.94735 0.89635 0.94323 1.44329 1.80805 1.02476 1.05147 1.18914 1.41512 0.82860 0.95526 0.89683 1.25280 0.99167 0.95897 0.97161 1.69837 1.46152 1.24182 1.14895 0.86988 0.81264 0.80306 0.80323 1.21713 1.23143 1.19515 1.20980 0.93740 0.96995 0.86285 1.21930 1.01769 0.95690 0.96490 0.87881 0.91696 0.91713 0.74361 0.87815 0.87851 0.90229 0.90707 0.90523 0.89617 0.92047 0.89946 0.92748 0.90988 0.92736 0.95791 0.90839 0.92755 0.95952 0.91674 0.92391 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.94 10.62 -40.33 -0.43 -4.37 16 3 C 0.65 8.16 8.75 54.06 0.47 8.63 16 4 O -0.57 -8.75 16.13 -19.28 -0.31 -9.06 16 5 N -0.70 -7.83 5.53 -66.47 -0.37 -8.20 16 6 C 0.12 1.32 5.35 -5.19 -0.03 1.29 16 7 C 0.53 6.35 7.70 -10.99 -0.08 6.27 16 8 O -0.54 -7.43 13.39 5.56 0.07 -7.36 16 9 N -0.60 -7.09 3.25 -163.23 -0.53 -7.62 16 10 C 0.10 1.21 4.69 -3.32 -0.02 1.19 16 11 C -0.06 -0.71 0.53 -154.09 -0.08 -0.79 16 12 C -0.12 -1.29 5.41 -24.87 -0.13 -1.43 16 13 C 0.14 1.50 3.44 -66.34 -0.23 1.27 16 14 H 0.08 0.89 7.76 -51.92 -0.40 0.49 16 15 C -0.16 -1.68 8.59 37.16 0.32 -1.36 16 16 C -0.12 -1.88 4.77 -26.95 -0.13 -2.01 16 17 C 0.12 2.50 3.91 -3.65 -0.01 2.48 16 18 N -0.60 -13.26 2.76 -172.17 -0.47 -13.74 16 19 C -0.26 -6.95 10.03 -15.06 -0.15 -7.10 16 20 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 21 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 22 N -0.91 -27.30 13.97 55.49 0.78 -26.53 16 23 Si 0.88 21.86 24.36 -169.99 -4.14 17.72 16 24 H -0.29 -6.93 6.63 56.52 0.37 -6.55 16 25 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.27 -6.54 6.64 56.52 0.38 -6.17 16 27 C 0.15 2.56 6.24 -3.65 -0.02 2.54 16 28 C -0.12 -1.65 4.70 -26.94 -0.13 -1.77 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.42 4.41 7.55 -40.82 -0.31 4.10 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.08 6.09 -51.93 -0.32 0.76 16 36 H 0.07 0.83 7.60 -51.93 -0.39 0.44 16 37 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 38 H 0.09 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.00 6.09 -51.93 -0.32 0.69 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.77 7.50 -51.93 -0.39 0.38 16 44 H 0.02 0.48 5.52 -51.93 -0.29 0.19 16 45 H 0.07 1.67 4.46 -51.93 -0.23 1.44 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 48 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 49 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -32.58 381.94 -7.00 -39.58 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.11 Total: 2.53 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 0.75 Total: 11.29 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.60 Total: -56.08 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.66 Total: -20.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.58 -7.00 -39.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263934352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.597 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds