Wall clock time and date at job start Tue Mar 31 2020 23:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34642 * 116.99905 * 2 1 4 4 O 1.21510 * 119.99536 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99591 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.46933 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00013 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99723 * 179.97438 * 7 6 5 10 10 C 1.47176 * 125.66455 * 359.96159 * 9 7 6 11 11 C 1.53682 * 107.12070 * 181.53902 * 10 9 7 12 12 C 1.54538 * 103.63345 * 21.54726 * 11 10 9 13 13 C 1.47482 * 125.66155 * 180.02562 * 9 7 6 14 14 H 1.09009 * 110.44623 * 274.84255 * 13 9 7 15 15 C 1.52997 * 110.35567 * 37.08269 * 13 9 7 16 16 C 1.52271 * 110.66727 * 263.47269 * 11 10 9 17 17 C 1.53302 * 109.46539 * 296.00449 * 16 11 10 18 18 N 1.46924 * 108.70436 * 306.49778 * 17 16 11 19 19 C 1.36943 * 120.58154 * 234.28839 * 18 17 16 20 20 H 1.08004 * 119.99553 * 152.47104 * 19 18 17 21 21 C 1.38811 * 120.00060 * 332.46917 * 19 18 17 22 22 N 1.31621 * 119.99567 * 159.32697 * 21 19 18 23 23 Si 1.86800 * 120.00011 * 339.33085 * 21 19 18 24 24 H 1.48501 * 109.47121 * 93.27660 * 23 21 19 25 25 H 1.48497 * 109.46750 * 213.27366 * 23 21 19 26 26 H 1.48498 * 109.47212 * 333.27312 * 23 21 19 27 27 C 1.46932 * 118.83746 * 54.31709 * 18 17 16 28 28 C 1.52280 * 110.66650 * 139.61933 * 11 10 9 29 29 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47080 * 299.99476 * 1 2 3 31 31 H 1.08996 * 109.47474 * 60.00272 * 1 2 3 32 32 H 0.96998 * 120.00361 * 359.97438 * 5 3 2 33 33 H 1.08997 * 109.46972 * 59.99688 * 6 5 3 34 34 H 1.09004 * 109.46678 * 299.99870 * 6 5 3 35 35 H 1.08997 * 109.90669 * 62.16854 * 10 9 7 36 36 H 1.08999 * 109.90833 * 300.91020 * 10 9 7 37 37 H 1.09001 * 111.01217 * 83.23204 * 12 11 10 38 38 H 1.08994 * 111.01590 * 207.09912 * 12 11 10 39 39 H 1.09006 * 109.47206 * 175.47163 * 15 13 9 40 40 H 1.09001 * 109.47550 * 295.47173 * 15 13 9 41 41 H 1.08999 * 109.47118 * 55.47554 * 15 13 9 42 42 H 1.09000 * 109.47519 * 176.00765 * 16 11 10 43 43 H 1.08994 * 109.47395 * 56.00179 * 16 11 10 44 44 H 1.09002 * 109.60085 * 66.26651 * 17 16 11 45 45 H 1.09002 * 109.59967 * 186.57106 * 17 16 11 46 46 H 0.97001 * 119.99535 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.60317 * 65.44813 * 27 18 17 48 48 H 1.09002 * 109.60086 * 185.76819 * 27 18 17 49 49 H 1.09002 * 109.46446 * 303.99811 * 28 11 10 50 50 H 1.08999 * 109.47564 * 183.99810 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.5682 2.3781 -0.0001 8 8 6.0317 1.2574 -0.0011 9 7 6.3891 3.4470 -0.0001 10 6 5.9635 4.8559 -0.0009 11 6 7.2381 5.7136 -0.0401 12 6 8.3059 4.7533 -0.6110 13 6 7.8632 3.3991 -0.0008 14 1 8.2414 3.3002 1.0168 15 6 8.3575 2.2383 -0.8662 16 6 7.6292 6.1595 1.3623 17 6 6.5360 7.0708 1.9321 18 7 6.2864 8.1602 0.9785 19 6 6.3581 9.4676 1.3799 20 1 6.6173 10.2375 0.6682 21 6 6.0975 9.8031 2.7013 22 7 6.5433 10.9403 3.1917 23 14 5.1141 8.6408 3.7837 24 1 6.0427 7.7506 4.5257 25 1 4.3060 9.4282 4.7491 26 1 4.2120 7.8198 2.9368 27 6 5.9580 7.8225 -0.4133 28 6 7.0548 6.9065 -0.9686 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9375 0.4567 -0.0005 33 1 3.7816 3.1319 0.8905 34 1 3.7809 3.1331 -0.8895 35 1 5.3977 5.0732 0.9050 36 1 5.3526 5.0586 -0.8806 37 1 8.2628 4.7238 -1.6998 38 1 9.3031 5.0293 -0.2684 39 1 9.4458 2.2644 -0.9220 40 1 8.0389 1.2942 -0.4244 41 1 7.9401 2.3293 -1.8690 42 1 8.5718 6.7052 1.3205 43 1 7.7437 5.2851 2.0029 44 1 5.6212 6.4966 2.0790 45 1 6.8650 7.4844 2.8855 46 1 6.3609 11.1750 4.1150 47 1 4.9986 7.3064 -0.4477 48 1 5.9042 8.7344 -1.0079 49 1 6.7673 6.5548 -1.9595 50 1 7.9908 7.4608 -1.0373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263934352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:50 Heat of formation + Delta-G solvation = -105.957354 kcal Electronic energy + Delta-G solvation = -31211.150218 eV Core-core repulsion = 27045.478871 eV Total energy + Delta-G solvation = -4165.671347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01025 -41.47111 -40.03365 -37.93404 -37.55242 -35.81760 -34.82317 -33.33451 -32.80023 -31.99032 -29.70674 -28.90657 -27.78812 -26.72681 -25.80064 -24.39510 -23.51251 -22.62185 -22.02917 -20.78438 -20.11097 -19.45136 -18.59905 -18.10442 -17.85222 -17.58254 -17.32905 -17.12137 -16.67977 -16.03170 -15.87949 -15.40792 -15.33081 -15.15517 -14.93087 -14.87267 -14.74668 -14.34639 -14.13464 -14.05553 -13.77294 -13.56963 -13.46971 -13.21206 -13.07158 -12.99417 -12.83562 -12.55721 -12.33639 -12.21519 -12.13729 -12.02031 -11.92633 -11.84721 -11.63885 -11.55818 -11.13404 -11.00840 -10.79446 -10.61009 -10.51388 -9.73981 -8.85875 -8.14376 -5.44181 0.93210 1.29318 1.37389 1.42075 1.49453 1.59778 1.90277 2.42692 3.09033 3.16702 3.21577 3.39300 3.46254 3.73891 3.75384 4.10227 4.11721 4.15364 4.19325 4.30727 4.33544 4.35922 4.37482 4.46557 4.48366 4.58116 4.65761 4.70348 4.71518 4.77459 4.83732 4.85985 4.91673 5.01568 5.06173 5.16138 5.20614 5.23143 5.25841 5.27077 5.30138 5.35911 5.50690 5.58419 5.91438 6.16387 6.18671 6.36548 6.91123 6.96956 7.13092 7.67661 8.07174 9.05856 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.003444 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.368656 B = 8126.995572 C = 9908.333293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.373 6.373 3 C 0.649 3.351 4 O -0.602 6.602 5 N -0.691 5.691 6 C 0.121 3.879 7 C 0.530 3.470 8 O -0.558 6.558 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.053 4.053 12 C -0.109 4.109 13 C 0.132 3.868 14 H 0.075 0.925 15 C -0.152 4.152 16 C -0.111 4.111 17 C 0.120 3.880 18 N -0.618 5.618 19 C -0.240 4.240 20 H 0.053 0.947 21 C -0.036 4.036 22 N -0.959 5.959 23 Si 0.941 3.059 24 H -0.278 1.278 25 H -0.317 1.317 26 H -0.258 1.258 27 C 0.139 3.861 28 C -0.107 4.107 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.422 0.578 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.259 0.741 47 H 0.038 0.962 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -23.648 -10.399 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.493 6.493 5 N -0.354 5.354 6 C -0.005 4.005 7 C 0.319 3.681 8 O -0.438 6.438 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.054 4.054 12 C -0.146 4.146 13 C 0.030 3.970 14 H 0.093 0.907 15 C -0.210 4.210 16 C -0.150 4.150 17 C -0.005 4.005 18 N -0.343 5.343 19 C -0.370 4.370 20 H 0.071 0.929 21 C -0.231 4.231 22 N -0.606 5.606 23 Si 0.771 3.229 24 H -0.205 1.205 25 H -0.246 1.246 26 H -0.183 1.183 27 C 0.014 3.986 28 C -0.146 4.146 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.261 0.739 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.926 -23.752 -10.302 26.055 hybrid contribution -0.483 0.185 1.183 1.291 sum -3.409 -23.568 -9.119 25.499 Atomic orbital electron populations 1.23550 0.72409 1.05804 1.02758 1.86260 1.26040 1.29640 1.86657 1.18106 0.83239 0.82457 0.76030 1.91017 1.65301 1.35918 1.57044 1.44174 1.02986 1.10644 1.77598 1.21049 0.88659 0.84713 1.06061 1.19969 0.88235 0.83710 0.76215 1.90654 1.77185 1.23844 1.52070 1.48563 1.07501 1.05952 1.71535 1.22361 0.97771 0.78960 1.03012 1.20846 0.94399 0.94674 0.95490 1.22908 0.98936 0.91331 1.01460 1.22091 0.78255 0.96718 0.99971 0.90685 1.22037 1.01718 0.98040 0.99183 1.21800 0.98794 0.98526 0.95872 1.21409 0.96521 0.89610 0.92976 1.44469 1.81380 1.01150 1.07260 1.18884 1.38857 0.84635 0.94637 0.92898 1.25868 1.00836 0.97512 0.98851 1.69968 1.48689 1.26716 1.15232 0.85999 0.79833 0.78487 0.78611 1.20463 1.24593 1.18277 1.21205 0.95961 0.97694 0.83720 1.21799 0.99770 0.94994 0.98066 0.84427 0.92045 0.91764 0.73930 0.87875 0.86827 0.91419 0.89001 0.88889 0.88660 0.90285 0.91797 0.92795 0.91913 0.91022 0.94961 0.93875 0.93165 0.94362 0.92780 0.88966 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 10.56 113.37 1.20 1.83 16 2 O -0.37 -7.34 10.62 -55.52 -0.59 -7.93 16 3 C 0.65 15.46 8.75 129.79 1.14 16.59 16 4 O -0.60 -17.88 16.13 19.81 0.32 -17.56 16 5 N -0.69 -14.41 5.53 -594.61 -3.29 -17.70 16 6 C 0.12 2.42 5.35 85.63 0.46 2.87 16 7 C 0.53 11.47 7.70 87.66 0.67 12.15 16 8 O -0.56 -14.22 13.39 -3.03 -0.04 -14.26 16 9 N -0.60 -12.21 3.25 -788.72 -2.56 -14.77 16 10 C 0.10 2.12 4.69 86.48 0.41 2.52 16 11 C -0.05 -1.20 0.53 -51.91 -0.03 -1.22 16 12 C -0.11 -1.84 5.41 31.80 0.17 -1.67 16 13 C 0.13 2.46 3.44 45.48 0.16 2.62 16 14 H 0.08 1.47 7.76 -2.38 -0.02 1.46 16 15 C -0.15 -2.69 8.59 71.98 0.62 -2.08 16 16 C -0.11 -3.19 4.77 30.45 0.15 -3.05 16 17 C 0.12 4.62 3.91 86.40 0.34 4.96 16 18 N -0.62 -26.73 2.76 -698.63 -1.92 -28.66 16 19 C -0.24 -13.12 10.03 84.03 0.84 -12.27 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 21 C -0.04 -2.09 5.23 84.86 0.44 -1.64 16 22 N -0.96 -59.90 13.97 21.65 0.30 -59.60 16 23 Si 0.94 46.02 24.36 68.60 1.67 47.69 16 24 H -0.28 -12.88 6.63 99.48 0.66 -12.22 16 25 H -0.32 -16.03 7.11 99.48 0.71 -15.32 16 26 H -0.26 -11.95 6.64 99.48 0.66 -11.29 16 27 C 0.14 4.61 6.24 86.40 0.54 5.14 16 28 C -0.11 -2.61 4.70 30.46 0.14 -2.46 16 29 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.42 8.22 7.55 -92.71 -0.70 7.52 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.62 6.09 -2.39 -0.01 1.60 16 36 H 0.09 1.65 7.60 -2.39 -0.02 1.63 16 37 H 0.09 1.36 7.92 -2.39 -0.02 1.34 16 38 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.41 6.09 -2.39 -0.01 1.39 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 1.83 7.50 -2.39 -0.02 1.81 16 44 H 0.03 1.21 5.52 -2.39 -0.01 1.20 16 45 H 0.04 1.93 4.46 -2.39 -0.01 1.92 16 46 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.04 1.17 7.49 -2.39 -0.02 1.16 16 48 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 49 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.56 381.94 1.29 -71.28 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.16 Total: 17.21 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 7.24 Total: 24.30 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -7.47 Total: -120.72 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.31 Total: -39.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -72.56 1.29 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263934352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.680 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds