Wall clock time and date at job start Tue Mar 31 2020 23:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99855 * 2 1 4 4 C 1.54319 * 109.88221 * 238.89671 * 2 1 3 5 5 H 1.08998 * 110.87207 * 336.82391 * 4 2 1 6 6 N 1.46505 * 110.71881 * 100.02876 * 4 2 1 7 7 C 1.34766 * 119.99883 * 199.97586 * 6 4 2 8 8 O 1.21284 * 120.00548 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99984 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47534 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47206 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99551 * 179.97438 * 11 10 9 14 14 C 1.47157 * 120.98645 * 359.71248 * 13 11 10 15 15 C 1.53709 * 108.15947 * 129.43214 * 14 13 11 16 16 O 1.42964 * 109.14695 * 52.54518 * 15 14 13 17 17 C 1.42961 * 114.16050 * 297.28206 * 16 15 14 18 18 C 1.47160 * 120.98115 * 179.97438 * 13 11 10 19 19 C 1.55154 * 102.94284 * 218.39102 * 4 2 1 20 20 C 1.54906 * 101.58203 * 35.50314 * 19 4 2 21 21 N 1.47025 * 109.87839 * 121.09022 * 2 1 3 22 22 C 1.36940 * 125.64954 * 298.31792 * 21 2 1 23 23 H 1.07995 * 120.00355 * 341.54011 * 22 21 2 24 24 C 1.38818 * 119.99770 * 161.53883 * 22 21 2 25 25 N 1.31612 * 119.99910 * 157.60804 * 24 22 21 26 26 Si 1.86803 * 119.99850 * 337.60442 * 24 22 21 27 27 H 1.48497 * 109.46913 * 84.54420 * 26 24 22 28 28 H 1.48497 * 109.46984 * 204.54003 * 26 24 22 29 29 H 1.48498 * 109.47475 * 324.54254 * 26 24 22 30 30 H 1.08997 * 109.47261 * 181.09955 * 1 2 3 31 31 H 1.09002 * 109.47135 * 301.09978 * 1 2 3 32 32 H 1.08993 * 109.47187 * 61.09681 * 1 2 3 33 33 H 0.97001 * 119.99802 * 20.25201 * 6 4 2 34 34 H 1.09006 * 109.46806 * 300.00071 * 9 7 6 35 35 H 1.08996 * 109.47319 * 59.99937 * 9 7 6 36 36 H 1.09003 * 109.46758 * 300.00229 * 10 9 7 37 37 H 1.08996 * 109.47089 * 59.99526 * 10 9 7 38 38 H 1.08998 * 109.68083 * 249.21125 * 14 13 11 39 39 H 1.09003 * 109.67864 * 9.76553 * 14 13 11 40 40 H 1.08998 * 109.66187 * 292.57019 * 15 14 13 41 41 H 1.09009 * 109.48076 * 172.39942 * 15 14 13 42 42 H 1.09002 * 109.51312 * 302.65367 * 17 16 15 43 43 H 1.09012 * 109.54957 * 182.53489 * 17 16 15 44 44 H 1.08995 * 109.67534 * 350.23145 * 18 13 11 45 45 H 1.08996 * 109.67619 * 110.74592 * 18 13 11 46 46 H 1.08998 * 111.00368 * 153.58085 * 19 4 2 47 47 H 1.09002 * 111.00277 * 277.39115 * 19 4 2 48 48 H 1.09005 * 110.36848 * 81.83043 * 20 19 4 49 49 H 1.09001 * 110.36554 * 204.04359 * 20 19 4 50 50 H 0.97000 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3065 -1.4460 -1.6208 6 7 2.4555 0.1958 -2.2875 7 6 2.5559 -0.2163 -3.5667 8 8 2.3142 -1.3698 -3.8530 9 6 2.9675 0.7564 -4.6416 10 6 3.0029 0.0389 -5.9925 11 6 3.4151 1.0115 -7.0673 12 8 3.6563 2.1651 -6.7811 13 7 3.5156 0.5993 -8.3465 14 6 3.2341 -0.7968 -8.7169 15 6 2.2462 -0.7900 -9.8945 16 8 2.7583 0.0504 -10.9314 17 6 2.9003 1.4225 -10.5559 18 6 3.9157 1.5307 -9.4133 19 6 3.2876 -1.5143 -0.6922 20 6 2.8145 -1.8793 0.7370 21 7 2.0299 -0.7140 1.1840 22 6 1.8049 -0.3554 2.4863 23 1 1.4856 0.6489 2.7225 24 6 1.9873 -1.2828 3.5030 25 7 2.2085 -0.8743 4.7344 26 14 1.9185 -3.1105 3.1233 27 1 3.2490 -3.5677 2.6481 28 1 1.5482 -3.8577 4.3521 29 1 0.9037 -3.3591 2.0681 30 1 -0.3633 -1.0274 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.6524 1.1175 -2.0580 34 1 2.2497 1.5757 -4.6844 35 1 3.9573 1.1521 -4.4140 36 1 3.7204 -0.7806 -5.9499 37 1 2.0130 -0.3565 -6.2199 38 1 4.1591 -1.2917 -9.0129 39 1 2.7924 -1.3197 -7.8686 40 1 1.2807 -0.4097 -9.5610 41 1 2.1263 -1.8048 -10.2742 42 1 1.9371 1.8109 -10.2249 43 1 3.2514 2.0003 -11.4111 44 1 3.9256 2.5496 -9.0263 45 1 4.9085 1.2668 -9.7776 46 1 3.4852 -2.4111 -1.2793 47 1 4.1655 -0.8691 -0.6609 48 1 2.1886 -2.7715 0.7132 49 1 3.6716 -2.0356 1.3920 50 1 2.3363 -1.5223 5.4448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264172124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:34 Heat of formation + Delta-G solvation = -86.849638 kcal Electronic energy + Delta-G solvation = -29755.397426 eV Core-core repulsion = 25590.554652 eV Total energy + Delta-G solvation = -4164.842774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.85029 -39.87778 -38.76395 -37.88571 -35.24404 -34.17550 -33.32759 -32.15199 -31.77024 -30.72818 -29.45661 -28.50877 -26.25475 -24.78421 -24.21635 -23.87280 -22.42712 -21.20659 -20.35890 -19.65764 -19.38446 -18.05928 -17.04755 -16.90415 -16.66669 -16.54488 -16.06345 -16.00587 -15.70283 -15.53604 -15.08286 -15.00025 -14.46879 -14.19854 -14.05691 -13.51207 -13.36552 -13.12989 -13.06848 -12.89958 -12.73371 -12.54555 -12.15031 -12.08480 -11.97206 -11.84725 -11.60940 -11.47613 -11.28842 -11.21843 -10.89807 -10.79929 -10.74042 -10.46385 -10.20004 -10.15044 -10.01081 -9.78978 -9.45091 -9.09363 -8.86761 -8.67931 -7.10260 -5.96271 -3.27270 2.19667 2.32955 2.64417 3.20214 3.25569 3.34811 3.48653 3.50735 4.04720 4.15094 4.37324 4.48090 4.53793 4.55168 4.60705 4.67734 4.76896 4.78624 4.92256 4.99835 5.04702 5.13172 5.16204 5.21896 5.23080 5.31374 5.32233 5.36196 5.52205 5.58844 5.61315 5.83932 5.87823 5.92978 6.02386 6.15238 6.28673 6.38365 6.44300 6.50926 6.61047 6.71880 6.78070 6.81830 6.95558 7.57001 7.68045 7.69494 8.24573 8.29680 8.80604 9.66729 10.14067 11.19552 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001911 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.219420 B =14647.591893 C =14968.974746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.047 0.953 4 C 0.134 3.866 5 H 0.095 0.905 6 N -0.715 5.715 7 C 0.514 3.486 8 O -0.548 6.548 9 C -0.126 4.126 10 C -0.123 4.123 11 C 0.519 3.481 12 O -0.538 6.538 13 N -0.620 5.620 14 C 0.069 3.931 15 C 0.046 3.954 16 O -0.380 6.380 17 C 0.048 3.952 18 C 0.076 3.924 19 C -0.140 4.140 20 C 0.111 3.889 21 N -0.601 5.601 22 C -0.239 4.239 23 H 0.093 0.907 24 C 0.022 3.978 25 N -0.907 5.907 26 Si 0.882 3.118 27 H -0.285 1.285 28 H -0.303 1.303 29 H -0.276 1.276 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 2.793 -30.866 31.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.030 3.970 5 H 0.113 0.887 6 N -0.365 5.365 7 C 0.300 3.700 8 O -0.426 6.426 9 C -0.166 4.166 10 C -0.163 4.163 11 C 0.308 3.692 12 O -0.414 6.414 13 N -0.356 5.356 14 C -0.054 4.054 15 C -0.031 4.031 16 O -0.298 6.298 17 C -0.030 4.030 18 C -0.047 4.047 19 C -0.179 4.179 20 C -0.014 4.014 21 N -0.327 5.327 22 C -0.365 4.365 23 H 0.110 0.890 24 C -0.176 4.176 25 N -0.551 5.551 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.231 1.231 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.236 0.764 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.833 2.515 -30.796 30.953 hybrid contribution -0.044 -0.671 0.343 0.755 sum 1.789 1.844 -30.453 30.561 Atomic orbital electron populations 1.22204 0.97183 1.01569 1.00521 1.21083 0.92879 0.95275 0.85972 0.93557 1.22125 0.96976 0.91085 0.86855 0.88703 1.46046 1.69150 1.14247 1.07067 1.20539 0.77074 0.88912 0.83499 1.90689 1.50224 1.19352 1.82328 1.21381 1.05010 0.98294 0.91952 1.21392 1.04744 0.98081 0.92057 1.20830 0.76424 0.89065 0.82869 1.90709 1.49861 1.19440 1.81439 1.48159 1.69209 1.10896 1.07299 1.22616 1.00699 0.82529 0.99533 1.23085 0.95649 0.96205 0.88197 1.87981 1.85657 1.18817 1.37366 1.22994 0.98599 0.83444 0.97932 1.22287 0.98536 0.95969 0.87896 1.23127 0.97630 1.00139 0.97036 1.21956 0.95239 0.91109 0.93112 1.44813 1.57528 1.28879 1.01477 1.18575 1.42570 0.96781 0.78614 0.88979 1.24989 1.00112 0.97681 0.94838 1.69831 1.50689 1.33963 1.00621 0.87002 0.78235 0.87443 0.76133 1.21211 1.23064 1.20198 0.93048 0.91971 0.94059 0.76354 0.88113 0.88067 0.87890 0.87971 0.90090 0.88005 0.92337 0.87337 0.92515 0.87500 0.87942 0.90604 0.91260 0.90967 0.95525 0.91959 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.14 37.16 0.34 -2.41 16 2 C 0.16 2.89 3.48 -66.95 -0.23 2.65 16 3 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 4 C 0.13 2.18 2.76 -66.10 -0.18 2.00 16 5 H 0.09 1.65 7.41 -51.93 -0.38 1.27 16 6 N -0.71 -9.12 5.20 -52.03 -0.27 -9.39 16 7 C 0.51 6.40 7.83 -10.99 -0.09 6.31 16 8 O -0.55 -8.54 15.71 5.55 0.09 -8.45 16 9 C -0.13 -1.18 4.99 -27.88 -0.14 -1.32 16 10 C -0.12 -1.03 3.36 -27.88 -0.09 -1.13 16 11 C 0.52 4.92 7.71 -10.99 -0.08 4.84 16 12 O -0.54 -6.79 15.45 5.56 0.09 -6.71 16 13 N -0.62 -4.68 3.01 -172.04 -0.52 -5.20 16 14 C 0.07 0.36 6.57 -3.32 -0.02 0.34 16 15 C 0.05 0.23 7.00 37.53 0.26 0.50 16 16 O -0.38 -2.68 10.74 -35.23 -0.38 -3.06 16 17 C 0.05 0.27 6.98 37.29 0.26 0.53 16 18 C 0.08 0.51 6.63 -3.55 -0.02 0.48 16 19 C -0.14 -2.43 6.77 -24.59 -0.17 -2.60 16 20 C 0.11 2.41 4.69 -2.53 -0.01 2.39 16 21 N -0.60 -14.01 2.94 -162.57 -0.48 -14.48 16 22 C -0.24 -6.56 10.19 -15.06 -0.15 -6.71 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 25 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 26 Si 0.88 22.52 24.27 -169.99 -4.13 18.39 16 27 H -0.29 -7.03 6.48 56.52 0.37 -6.67 16 28 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 29 H -0.28 -6.99 6.66 56.52 0.38 -6.61 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.24 8.31 -40.82 -0.34 3.90 16 34 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.10 0.83 7.96 -51.93 -0.41 0.41 16 37 H 0.10 0.79 7.63 -51.93 -0.40 0.40 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.44 6.05 -51.93 -0.31 0.12 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.10 0.77 7.08 -51.93 -0.37 0.40 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.03 0.61 5.58 -51.93 -0.29 0.32 16 49 H 0.06 1.44 6.63 -51.93 -0.34 1.09 16 50 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -34.95 391.44 -7.71 -42.65 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.35 Total: 0.81 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.43 Total: 6.43 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.49 Total: -55.97 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.21 Total: -18.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.13 Total: 18.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.95 -7.71 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264172124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.196 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds