Wall clock time and date at job start Tue Mar 31 2020 23:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99855 * 2 1 4 4 C 1.54319 * 109.88221 * 238.89671 * 2 1 3 5 5 H 1.08998 * 110.87207 * 336.82391 * 4 2 1 6 6 N 1.46505 * 110.71881 * 100.02876 * 4 2 1 7 7 C 1.34766 * 119.99883 * 199.97586 * 6 4 2 8 8 O 1.21284 * 120.00548 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99984 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47534 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47206 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99551 * 179.97438 * 11 10 9 14 14 C 1.47157 * 120.98645 * 359.71248 * 13 11 10 15 15 C 1.53709 * 108.15947 * 129.43214 * 14 13 11 16 16 O 1.42964 * 109.14695 * 52.54518 * 15 14 13 17 17 C 1.42961 * 114.16050 * 297.28206 * 16 15 14 18 18 C 1.47160 * 120.98115 * 179.97438 * 13 11 10 19 19 C 1.55154 * 102.94284 * 218.39102 * 4 2 1 20 20 C 1.54906 * 101.58203 * 35.50314 * 19 4 2 21 21 N 1.47025 * 109.87839 * 121.09022 * 2 1 3 22 22 C 1.36940 * 125.64954 * 298.31792 * 21 2 1 23 23 H 1.07995 * 120.00355 * 341.54011 * 22 21 2 24 24 C 1.38818 * 119.99770 * 161.53883 * 22 21 2 25 25 N 1.31612 * 119.99910 * 157.60804 * 24 22 21 26 26 Si 1.86803 * 119.99850 * 337.60442 * 24 22 21 27 27 H 1.48497 * 109.46913 * 84.54420 * 26 24 22 28 28 H 1.48497 * 109.46984 * 204.54003 * 26 24 22 29 29 H 1.48498 * 109.47475 * 324.54254 * 26 24 22 30 30 H 1.08997 * 109.47261 * 181.09955 * 1 2 3 31 31 H 1.09002 * 109.47135 * 301.09978 * 1 2 3 32 32 H 1.08993 * 109.47187 * 61.09681 * 1 2 3 33 33 H 0.97001 * 119.99802 * 20.25201 * 6 4 2 34 34 H 1.09006 * 109.46806 * 300.00071 * 9 7 6 35 35 H 1.08996 * 109.47319 * 59.99937 * 9 7 6 36 36 H 1.09003 * 109.46758 * 300.00229 * 10 9 7 37 37 H 1.08996 * 109.47089 * 59.99526 * 10 9 7 38 38 H 1.08998 * 109.68083 * 249.21125 * 14 13 11 39 39 H 1.09003 * 109.67864 * 9.76553 * 14 13 11 40 40 H 1.08998 * 109.66187 * 292.57019 * 15 14 13 41 41 H 1.09009 * 109.48076 * 172.39942 * 15 14 13 42 42 H 1.09002 * 109.51312 * 302.65367 * 17 16 15 43 43 H 1.09012 * 109.54957 * 182.53489 * 17 16 15 44 44 H 1.08995 * 109.67534 * 350.23145 * 18 13 11 45 45 H 1.08996 * 109.67619 * 110.74592 * 18 13 11 46 46 H 1.08998 * 111.00368 * 153.58085 * 19 4 2 47 47 H 1.09002 * 111.00277 * 277.39115 * 19 4 2 48 48 H 1.09005 * 110.36848 * 81.83043 * 20 19 4 49 49 H 1.09001 * 110.36554 * 204.04359 * 20 19 4 50 50 H 0.97000 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3065 -1.4460 -1.6208 6 7 2.4555 0.1958 -2.2875 7 6 2.5559 -0.2163 -3.5667 8 8 2.3142 -1.3698 -3.8530 9 6 2.9675 0.7564 -4.6416 10 6 3.0029 0.0389 -5.9925 11 6 3.4151 1.0115 -7.0673 12 8 3.6563 2.1651 -6.7811 13 7 3.5156 0.5993 -8.3465 14 6 3.2341 -0.7968 -8.7169 15 6 2.2462 -0.7900 -9.8945 16 8 2.7583 0.0504 -10.9314 17 6 2.9003 1.4225 -10.5559 18 6 3.9157 1.5307 -9.4133 19 6 3.2876 -1.5143 -0.6922 20 6 2.8145 -1.8793 0.7370 21 7 2.0299 -0.7140 1.1840 22 6 1.8049 -0.3554 2.4863 23 1 1.4856 0.6489 2.7225 24 6 1.9873 -1.2828 3.5030 25 7 2.2085 -0.8743 4.7344 26 14 1.9185 -3.1105 3.1233 27 1 3.2490 -3.5677 2.6481 28 1 1.5482 -3.8577 4.3521 29 1 0.9037 -3.3591 2.0681 30 1 -0.3633 -1.0274 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.6524 1.1175 -2.0580 34 1 2.2497 1.5757 -4.6844 35 1 3.9573 1.1521 -4.4140 36 1 3.7204 -0.7806 -5.9499 37 1 2.0130 -0.3565 -6.2199 38 1 4.1591 -1.2917 -9.0129 39 1 2.7924 -1.3197 -7.8686 40 1 1.2807 -0.4097 -9.5610 41 1 2.1263 -1.8048 -10.2742 42 1 1.9371 1.8109 -10.2249 43 1 3.2514 2.0003 -11.4111 44 1 3.9256 2.5496 -9.0263 45 1 4.9085 1.2668 -9.7776 46 1 3.4852 -2.4111 -1.2793 47 1 4.1655 -0.8691 -0.6609 48 1 2.1886 -2.7715 0.7132 49 1 3.6716 -2.0356 1.3920 50 1 2.3363 -1.5223 5.4448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264172124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:33 Heat of formation + Delta-G solvation = -112.932591 kcal Electronic energy + Delta-G solvation = -29756.528468 eV Core-core repulsion = 25590.554652 eV Total energy + Delta-G solvation = -4165.973816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52242 -40.94594 -39.54309 -39.15967 -35.84026 -35.60896 -34.19834 -33.86855 -32.32572 -32.25109 -31.09000 -29.13031 -27.24428 -25.90465 -25.73850 -24.83901 -23.12373 -22.58094 -21.53744 -20.97785 -20.08515 -18.86719 -18.78286 -17.76603 -17.44473 -17.33133 -17.18246 -16.90238 -16.66714 -16.30654 -16.09820 -15.98186 -15.73731 -15.25373 -15.06322 -14.84153 -14.59323 -14.48132 -14.21338 -13.98342 -13.78412 -13.56383 -13.41322 -13.21973 -13.07358 -12.90791 -12.66589 -12.57246 -12.45815 -12.36672 -12.18660 -12.09163 -12.00151 -11.75955 -11.60562 -11.48023 -11.25055 -10.89423 -10.88122 -10.79955 -10.01463 -9.65329 -9.08012 -8.16726 -5.42969 1.30259 1.39038 1.46666 1.50545 1.65777 1.73065 2.20232 2.41605 2.86080 3.04249 3.27627 3.42549 3.65845 3.71595 3.76935 3.80382 3.99809 4.03612 4.08794 4.09974 4.14699 4.22585 4.27473 4.30142 4.44814 4.48089 4.54467 4.63069 4.66612 4.74764 4.75919 4.80911 4.83203 4.85167 4.90968 4.92565 4.94474 4.99864 5.12326 5.16773 5.34501 5.38083 5.58157 5.70520 6.09630 6.11944 6.22122 6.58044 6.75778 7.02207 7.26373 7.54466 8.10022 9.02790 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001911 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.219420 B =14647.591893 C =14968.974746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.149 3.851 3 H 0.058 0.942 4 C 0.151 3.849 5 H 0.089 0.911 6 N -0.708 5.708 7 C 0.519 3.481 8 O -0.576 6.576 9 C -0.117 4.117 10 C -0.117 4.117 11 C 0.518 3.482 12 O -0.576 6.576 13 N -0.619 5.619 14 C 0.067 3.933 15 C 0.044 3.956 16 O -0.396 6.396 17 C 0.051 3.949 18 C 0.074 3.926 19 C -0.127 4.127 20 C 0.104 3.896 21 N -0.618 5.618 22 C -0.220 4.220 23 H 0.066 0.934 24 C -0.036 4.036 25 N -0.954 5.954 26 Si 0.939 3.061 27 H -0.272 1.272 28 H -0.310 1.310 29 H -0.272 1.272 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.021 0.979 49 H 0.044 0.956 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 2.189 -33.955 34.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.075 0.925 4 C 0.045 3.955 5 H 0.107 0.893 6 N -0.359 5.359 7 C 0.307 3.693 8 O -0.456 6.456 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.308 3.692 12 O -0.455 6.455 13 N -0.353 5.353 14 C -0.055 4.055 15 C -0.034 4.034 16 O -0.315 6.315 17 C -0.026 4.026 18 C -0.049 4.049 19 C -0.167 4.167 20 C -0.021 4.021 21 N -0.344 5.344 22 C -0.349 4.349 23 H 0.083 0.917 24 C -0.231 4.231 25 N -0.602 5.602 26 Si 0.768 3.232 27 H -0.198 1.198 28 H -0.239 1.239 29 H -0.198 1.198 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.062 0.938 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.970 1.910 -33.968 34.079 hybrid contribution -0.090 -0.401 1.198 1.266 sum 1.880 1.509 -32.771 32.859 Atomic orbital electron populations 1.22113 0.96323 1.01005 1.01332 1.21285 0.93558 0.95544 0.85278 0.92453 1.21723 0.96138 0.91051 0.86581 0.89262 1.45896 1.69125 1.14352 1.06550 1.20972 0.75973 0.88866 0.83502 1.90685 1.51406 1.20784 1.82685 1.21327 1.05509 0.97647 0.91184 1.21362 1.05418 0.97768 0.91177 1.20980 0.76020 0.88621 0.83580 1.90694 1.51828 1.20904 1.82121 1.48276 1.68147 1.11983 1.06940 1.22791 1.01295 0.81288 1.00116 1.23233 0.95378 0.96939 0.87809 1.87962 1.85794 1.19398 1.38340 1.23035 0.98155 0.83267 0.98155 1.22347 0.99270 0.95320 0.87965 1.23037 0.98286 1.01113 0.94215 1.22009 0.94285 0.90381 0.95421 1.44893 1.58428 1.29719 1.01332 1.18502 1.40084 0.95580 0.80717 0.91667 1.25561 1.01327 1.01371 0.94828 1.69947 1.53566 1.34989 1.01655 0.86064 0.78764 0.82858 0.75492 1.19833 1.23871 1.19763 0.94154 0.93922 0.90573 0.74833 0.87153 0.87376 0.87258 0.87066 0.89339 0.86837 0.92351 0.85450 0.92804 0.85766 0.89072 0.90016 0.89838 0.89975 0.96113 0.93769 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.14 71.98 0.66 -4.36 16 2 C 0.15 5.29 3.48 45.34 0.16 5.45 16 3 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 4 C 0.15 4.50 2.76 46.18 0.13 4.63 16 5 H 0.09 2.85 7.41 -2.39 -0.02 2.83 16 6 N -0.71 -15.77 5.20 -436.93 -2.27 -18.05 16 7 C 0.52 11.30 7.83 87.66 0.69 11.98 16 8 O -0.58 -16.20 15.71 -3.04 -0.05 -16.25 16 9 C -0.12 -1.85 4.99 29.85 0.15 -1.70 16 10 C -0.12 -1.67 3.36 29.85 0.10 -1.57 16 11 C 0.52 8.91 7.71 87.66 0.68 9.58 16 12 O -0.58 -13.87 15.45 -3.02 -0.05 -13.91 16 13 N -0.62 -8.26 3.01 -816.62 -2.46 -10.72 16 14 C 0.07 0.55 6.57 86.49 0.57 1.12 16 15 C 0.04 0.34 7.00 72.22 0.51 0.85 16 16 O -0.40 -4.85 10.74 -148.98 -1.60 -6.45 16 17 C 0.05 0.50 6.98 72.07 0.50 1.00 16 18 C 0.07 0.89 6.63 86.34 0.57 1.46 16 19 C -0.13 -4.09 6.77 31.98 0.22 -3.87 16 20 C 0.10 4.37 4.69 86.85 0.41 4.77 16 21 N -0.62 -28.38 2.94 -668.25 -1.96 -30.35 16 22 C -0.22 -12.29 10.19 84.03 0.86 -11.44 16 23 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.04 -2.13 5.43 84.86 0.46 -1.67 16 25 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16 26 Si 0.94 47.13 24.27 68.60 1.67 48.80 16 27 H -0.27 -12.93 6.48 99.48 0.65 -12.29 16 28 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 29 H -0.27 -13.29 6.66 99.48 0.66 -12.63 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.41 7.35 8.31 -92.71 -0.77 6.58 16 34 H 0.11 1.60 8.10 -2.38 -0.02 1.58 16 35 H 0.11 1.63 8.10 -2.39 -0.02 1.62 16 36 H 0.11 1.44 7.96 -2.39 -0.02 1.42 16 37 H 0.11 1.40 7.63 -2.39 -0.02 1.38 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.66 6.05 -2.39 -0.01 0.64 16 40 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.09 1.33 7.08 -2.39 -0.02 1.31 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.02 0.92 5.58 -2.38 -0.01 0.90 16 49 H 0.04 2.00 6.63 -2.39 -0.02 1.98 16 50 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -76.08 391.44 0.28 -75.79 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.06 Total: 14.49 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.64 Total: 16.23 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -6.40 Total: -118.70 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.69 Total: -36.61 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -76.08 0.28 -75.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264172124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.139 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds