Wall clock time and date at job start Tue Mar 31 2020 23:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.39251 * 2 1 4 4 C 1.54389 * 110.34044 * 122.23452 * 2 1 3 5 5 N 1.48146 * 104.71947 * 94.94492 * 4 2 1 6 6 C 1.34778 * 127.83527 * 219.63954 * 5 4 2 7 7 O 1.21280 * 120.00307 * 180.02562 * 6 5 4 8 8 C 1.50707 * 120.00034 * 0.02562 * 6 5 4 9 9 O 1.42905 * 109.47076 * 180.02562 * 8 6 5 10 10 C 1.42896 * 113.99728 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46914 * 179.97438 * 10 9 8 12 12 C 1.52994 * 117.50297 * 243.62605 * 11 10 9 13 13 C 1.52993 * 117.49850 * 175.00162 * 11 10 9 14 14 C 1.48427 * 104.18376 * 39.57151 * 5 4 2 15 15 C 1.54289 * 110.34096 * 237.77028 * 2 1 3 16 16 H 1.08999 * 110.34342 * 0.10276 * 15 2 1 17 17 N 1.46901 * 110.34318 * 122.26195 * 15 2 1 18 18 C 1.46890 * 110.99958 * 204.99856 * 17 15 2 19 19 C 1.50703 * 109.47189 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99702 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99856 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99925 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99991 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00224 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99650 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99897 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47118 * 89.99827 * 26 24 22 28 28 H 1.48505 * 109.46958 * 209.99667 * 26 24 22 29 29 H 1.48495 * 109.47141 * 329.99652 * 26 24 22 30 30 H 1.09004 * 109.47334 * 299.22545 * 1 2 3 31 31 H 1.09000 * 109.46957 * 59.21931 * 1 2 3 32 32 H 1.09002 * 109.47681 * 179.21976 * 1 2 3 33 33 H 1.09002 * 110.40709 * 213.78791 * 4 2 1 34 34 H 1.09002 * 110.40588 * 336.10152 * 4 2 1 35 35 H 1.08996 * 109.47034 * 299.99703 * 8 6 5 36 36 H 1.08998 * 109.46990 * 60.00388 * 8 6 5 37 37 H 1.08998 * 109.47322 * 299.99789 * 10 9 8 38 38 H 1.08998 * 109.46891 * 60.00379 * 10 9 8 39 39 H 1.08999 * 115.54876 * 29.33534 * 11 10 9 40 40 H 1.09006 * 117.49486 * 0.02562 * 12 11 10 41 41 H 1.09003 * 117.50429 * 145.02195 * 12 11 10 42 42 H 1.09004 * 117.50001 * 214.98411 * 13 11 10 43 43 H 1.09002 * 117.50336 * 0.02562 * 13 11 10 44 44 H 1.09004 * 110.39413 * 201.64938 * 14 5 4 45 45 H 1.09006 * 110.49084 * 79.28969 * 14 5 4 46 46 H 1.00898 * 110.99741 * 328.95095 * 17 15 2 47 47 H 1.08998 * 109.47283 * 299.99784 * 18 17 15 48 48 H 1.08999 * 109.47630 * 59.99810 * 18 17 15 49 49 H 0.96994 * 120.00764 * 359.97438 * 21 19 18 50 50 H 0.97003 * 119.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7721 1.2245 5 7 2.3133 -2.1450 0.7253 6 6 2.0753 -3.3104 1.3592 7 8 2.3341 -4.3617 0.8129 8 6 1.4876 -3.3070 2.7470 9 8 1.3311 -4.6529 3.2012 10 6 0.7785 -4.7624 4.5145 11 6 0.6561 -6.2394 4.8946 12 6 -0.7501 -6.7938 5.1314 13 6 0.1922 -6.5671 6.3153 14 6 2.8800 -1.9423 -0.6314 15 6 2.0663 -0.7715 -1.2238 16 1 1.2397 -1.1489 -1.8258 17 7 2.9332 0.0947 -2.0338 18 6 2.9732 -0.3587 -3.4304 19 6 3.8706 0.5516 -4.2286 20 8 4.4222 1.4864 -3.6872 21 7 4.0594 0.3276 -5.5441 22 6 4.8755 1.1560 -6.2703 23 1 5.3667 1.9884 -5.7883 24 6 5.0706 0.9248 -7.6265 25 7 5.8532 1.7186 -8.3224 26 14 4.2205 -0.5144 -8.4604 27 1 2.8996 -0.0764 -8.9786 28 1 5.0582 -0.9991 -9.5867 29 1 4.0279 -1.6119 -7.4787 30 1 -0.3634 0.5018 0.8969 31 1 -0.3633 0.5259 -0.8829 32 1 -0.3634 -1.0276 -0.0140 33 1 2.9949 -0.3242 1.5793 34 1 1.3230 -0.7853 2.0213 35 1 2.1543 -2.7712 3.4225 36 1 0.5157 -2.8140 2.7287 37 1 1.4306 -4.2565 5.2264 38 1 -0.2082 -4.2998 4.5332 39 1 1.3894 -6.9045 4.4387 40 1 -1.5881 -6.1063 5.0160 41 1 -0.9423 -7.8238 4.8312 42 1 0.6201 -7.4480 6.7938 43 1 -0.0261 -5.7305 6.9790 44 1 2.7493 -2.8400 -1.2357 45 1 3.9357 -1.6779 -0.5684 46 1 2.6387 1.0579 -1.9746 47 1 3.3603 -1.3768 -3.4710 48 1 1.9670 -0.3357 -3.8489 49 1 3.6181 -0.4197 -5.9772 50 1 5.9891 1.5574 -9.2692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274173648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:08 Heat of formation + Delta-G solvation = -74.140478 kcal Electronic energy + Delta-G solvation = -28826.741321 eV Core-core repulsion = 24662.449658 eV Total energy + Delta-G solvation = -4164.291663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43824 -39.05233 -38.45784 -37.89820 -36.69357 -34.83245 -33.86688 -32.54891 -31.66376 -30.17604 -28.53437 -26.99739 -26.83421 -25.76042 -24.02532 -22.86116 -22.32802 -21.23797 -20.43874 -19.74019 -19.32284 -18.30670 -17.76865 -16.93215 -16.86283 -16.36752 -16.04501 -15.72012 -15.51384 -15.18772 -14.96830 -14.67574 -14.48092 -14.15396 -13.98015 -13.64195 -13.57817 -13.25449 -13.10097 -12.88478 -12.79860 -12.48843 -12.35290 -12.17419 -12.01790 -11.98381 -11.72599 -11.57409 -11.31552 -11.26715 -11.13103 -10.94468 -10.90168 -10.77446 -10.59577 -10.01783 -9.98807 -9.97390 -9.58265 -8.98615 -8.61756 -8.26810 -8.18317 -6.32052 -3.83601 2.29370 2.37223 3.03379 3.06781 3.15451 3.18663 3.47925 3.72084 3.98686 4.08938 4.10363 4.22099 4.34131 4.39150 4.49357 4.56818 4.61556 4.66780 4.74620 4.80175 4.81162 4.96711 5.06944 5.11551 5.13035 5.15598 5.17527 5.19431 5.25958 5.40885 5.41685 5.54436 5.56518 5.61824 5.68449 5.69885 5.72906 5.74003 5.82339 5.89465 5.92398 6.04134 6.63735 7.01837 7.27586 7.47974 7.56867 7.93361 8.13138 8.58338 8.93733 9.41336 9.80836 10.80962 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.001729 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.585026 B =16188.772303 C =16856.709293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.099 0.901 4 C 0.106 3.894 5 N -0.623 5.623 6 C 0.535 3.465 7 O -0.519 6.519 8 C 0.051 3.949 9 O -0.360 6.360 10 C 0.092 3.908 11 C -0.154 4.154 12 C -0.177 4.177 13 C -0.173 4.173 14 C 0.116 3.884 15 C 0.076 3.924 16 H 0.059 0.941 17 N -0.658 5.658 18 C 0.046 3.954 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.355 0.645 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 -10.977 27.070 33.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.117 0.883 4 C -0.017 4.017 5 N -0.360 5.360 6 C 0.323 3.677 7 O -0.394 6.394 8 C -0.029 4.029 9 O -0.279 6.279 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.214 4.214 13 C -0.210 4.210 14 C -0.007 4.007 15 C -0.035 4.035 16 H 0.077 0.923 17 N -0.292 5.292 18 C -0.087 4.087 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.177 0.823 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.017 -11.458 27.049 32.991 hybrid contribution -1.511 -0.532 -1.071 1.927 sum -16.528 -11.990 25.978 33.042 Atomic orbital electron populations 1.21874 0.94065 1.02015 1.02281 1.22331 0.96212 1.00314 0.94113 0.88286 1.22513 1.01059 0.81546 0.96597 1.48913 1.63734 1.05197 1.18131 1.19752 0.78690 0.82386 0.86919 1.90756 1.51311 1.30135 1.67174 1.22126 1.01009 0.85945 0.93804 1.88012 1.84187 1.23728 1.31931 1.22075 0.97371 0.95137 0.83844 1.22116 0.99231 0.96284 0.99613 1.23080 0.93245 1.02638 1.02419 1.22983 1.03806 1.03552 0.90659 1.22503 0.98521 0.97943 0.81736 1.22505 0.93532 0.93650 0.93821 0.92267 1.60089 1.54013 1.06476 1.08620 1.21797 0.98437 0.99815 0.88640 1.19659 0.86443 0.87877 0.82464 1.90564 1.51859 1.32539 1.69759 1.42208 1.44232 1.28260 1.08190 1.19433 1.22927 1.09818 0.91286 0.86256 1.25035 0.97117 0.97753 0.96166 1.69622 1.36457 1.37458 1.08509 0.86680 0.80175 0.82391 0.80215 1.19669 1.20131 1.19417 0.92150 0.92095 0.92582 0.90110 0.90432 0.90217 0.90346 0.92577 0.92956 0.86567 0.88646 0.88480 0.88283 0.88631 0.90144 0.89220 0.82342 0.89393 0.93534 0.79664 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.90 37.16 0.33 -0.65 16 2 C -0.11 -0.88 3.34 -89.22 -0.30 -1.18 16 3 H 0.10 0.78 7.52 -51.93 -0.39 0.39 16 4 C 0.11 0.77 6.45 -2.41 -0.02 0.75 16 5 N -0.62 -6.52 3.33 -169.06 -0.56 -7.09 16 6 C 0.54 6.55 8.00 -10.98 -0.09 6.46 16 7 O -0.52 -8.86 16.78 -14.35 -0.24 -9.10 16 8 C 0.05 0.43 5.40 36.01 0.19 0.63 16 9 O -0.36 -3.89 9.88 -55.14 -0.54 -4.44 16 10 C 0.09 0.66 6.22 37.16 0.23 0.89 16 11 C -0.15 -1.10 6.06 -90.62 -0.55 -1.65 16 12 C -0.18 -1.04 10.18 -26.74 -0.27 -1.31 16 13 C -0.17 -0.88 10.25 -26.74 -0.27 -1.16 16 14 C 0.12 1.38 6.76 -2.25 -0.02 1.36 16 15 C 0.08 0.82 3.05 -66.31 -0.20 0.62 16 16 H 0.06 0.64 7.39 -51.93 -0.38 0.25 16 17 N -0.66 -9.21 5.91 -106.51 -0.63 -9.84 16 18 C 0.05 0.73 6.02 -4.98 -0.03 0.70 16 19 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16 20 O -0.57 -14.77 15.78 5.55 0.09 -14.68 16 21 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 22 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.45 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 25 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 26 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.37 7.02 -51.93 -0.36 0.00 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.47 7.95 -51.93 -0.41 0.05 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 39 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 45 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 46 H 0.36 5.02 7.75 -39.29 -0.30 4.72 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 49 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 411.87 15.07 6.21 6.21 Total: -1.00 -35.89 411.87 -9.37 -45.26 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.37 Total: 10.22 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.32 Total: 7.63 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.47 Total: -55.77 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.70 Total: -28.22 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.89 -9.37 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.876 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds