Wall clock time and date at job start Tue Mar 31 2020 23:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.39251 * 2 1 4 4 C 1.54389 * 110.34044 * 122.23452 * 2 1 3 5 5 N 1.48146 * 104.71947 * 94.94492 * 4 2 1 6 6 C 1.34778 * 127.83527 * 219.63954 * 5 4 2 7 7 O 1.21280 * 120.00307 * 180.02562 * 6 5 4 8 8 C 1.50707 * 120.00034 * 0.02562 * 6 5 4 9 9 O 1.42905 * 109.47076 * 180.02562 * 8 6 5 10 10 C 1.42896 * 113.99728 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46914 * 179.97438 * 10 9 8 12 12 C 1.52994 * 117.50297 * 243.62605 * 11 10 9 13 13 C 1.52993 * 117.49850 * 175.00162 * 11 10 9 14 14 C 1.48427 * 104.18376 * 39.57151 * 5 4 2 15 15 C 1.54289 * 110.34096 * 237.77028 * 2 1 3 16 16 H 1.08999 * 110.34342 * 0.10276 * 15 2 1 17 17 N 1.46901 * 110.34318 * 122.26195 * 15 2 1 18 18 C 1.46890 * 110.99958 * 204.99856 * 17 15 2 19 19 C 1.50703 * 109.47189 * 180.02562 * 18 17 15 20 20 O 1.21290 * 119.99702 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99856 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99925 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99991 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00224 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99650 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99897 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47118 * 89.99827 * 26 24 22 28 28 H 1.48505 * 109.46958 * 209.99667 * 26 24 22 29 29 H 1.48495 * 109.47141 * 329.99652 * 26 24 22 30 30 H 1.09004 * 109.47334 * 299.22545 * 1 2 3 31 31 H 1.09000 * 109.46957 * 59.21931 * 1 2 3 32 32 H 1.09002 * 109.47681 * 179.21976 * 1 2 3 33 33 H 1.09002 * 110.40709 * 213.78791 * 4 2 1 34 34 H 1.09002 * 110.40588 * 336.10152 * 4 2 1 35 35 H 1.08996 * 109.47034 * 299.99703 * 8 6 5 36 36 H 1.08998 * 109.46990 * 60.00388 * 8 6 5 37 37 H 1.08998 * 109.47322 * 299.99789 * 10 9 8 38 38 H 1.08998 * 109.46891 * 60.00379 * 10 9 8 39 39 H 1.08999 * 115.54876 * 29.33534 * 11 10 9 40 40 H 1.09006 * 117.49486 * 0.02562 * 12 11 10 41 41 H 1.09003 * 117.50429 * 145.02195 * 12 11 10 42 42 H 1.09004 * 117.50001 * 214.98411 * 13 11 10 43 43 H 1.09002 * 117.50336 * 0.02562 * 13 11 10 44 44 H 1.09004 * 110.39413 * 201.64938 * 14 5 4 45 45 H 1.09006 * 110.49084 * 79.28969 * 14 5 4 46 46 H 1.00898 * 110.99741 * 328.95095 * 17 15 2 47 47 H 1.08998 * 109.47283 * 299.99784 * 18 17 15 48 48 H 1.08999 * 109.47630 * 59.99810 * 18 17 15 49 49 H 0.96994 * 120.00764 * 359.97438 * 21 19 18 50 50 H 0.97003 * 119.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7721 1.2245 5 7 2.3133 -2.1450 0.7253 6 6 2.0753 -3.3104 1.3592 7 8 2.3341 -4.3617 0.8129 8 6 1.4876 -3.3070 2.7470 9 8 1.3311 -4.6529 3.2012 10 6 0.7785 -4.7624 4.5145 11 6 0.6561 -6.2394 4.8946 12 6 -0.7501 -6.7938 5.1314 13 6 0.1922 -6.5671 6.3153 14 6 2.8800 -1.9423 -0.6314 15 6 2.0663 -0.7715 -1.2238 16 1 1.2397 -1.1489 -1.8258 17 7 2.9332 0.0947 -2.0338 18 6 2.9732 -0.3587 -3.4304 19 6 3.8706 0.5516 -4.2286 20 8 4.4222 1.4864 -3.6872 21 7 4.0594 0.3276 -5.5441 22 6 4.8755 1.1560 -6.2703 23 1 5.3667 1.9884 -5.7883 24 6 5.0706 0.9248 -7.6265 25 7 5.8532 1.7186 -8.3224 26 14 4.2205 -0.5144 -8.4604 27 1 2.8996 -0.0764 -8.9786 28 1 5.0582 -0.9991 -9.5867 29 1 4.0279 -1.6119 -7.4787 30 1 -0.3634 0.5018 0.8969 31 1 -0.3633 0.5259 -0.8829 32 1 -0.3634 -1.0276 -0.0140 33 1 2.9949 -0.3242 1.5793 34 1 1.3230 -0.7853 2.0213 35 1 2.1543 -2.7712 3.4225 36 1 0.5157 -2.8140 2.7287 37 1 1.4306 -4.2565 5.2264 38 1 -0.2082 -4.2998 4.5332 39 1 1.3894 -6.9045 4.4387 40 1 -1.5881 -6.1063 5.0160 41 1 -0.9423 -7.8238 4.8312 42 1 0.6201 -7.4480 6.7938 43 1 -0.0261 -5.7305 6.9790 44 1 2.7493 -2.8400 -1.2357 45 1 3.9357 -1.6779 -0.5684 46 1 2.6387 1.0579 -1.9746 47 1 3.3603 -1.3768 -3.4710 48 1 1.9670 -0.3357 -3.8489 49 1 3.6181 -0.4197 -5.9772 50 1 5.9891 1.5574 -9.2692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:07 Heat of formation + Delta-G solvation = -101.157879 kcal Electronic energy + Delta-G solvation = -28827.912884 eV Core-core repulsion = 24662.449658 eV Total energy + Delta-G solvation = -4165.463226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29458 -40.31976 -39.55165 -38.79548 -37.29095 -36.24013 -35.58155 -33.76210 -33.31920 -31.00189 -29.45114 -28.04848 -27.52018 -26.72906 -25.58438 -23.27859 -23.22645 -21.74505 -21.43045 -21.10161 -20.55558 -20.11663 -18.50627 -17.87632 -17.62961 -17.33608 -17.03481 -16.90224 -16.62963 -16.54077 -15.91208 -15.68551 -15.42398 -15.27366 -14.94930 -14.83343 -14.49960 -14.39423 -14.27852 -14.06968 -13.71822 -13.60052 -13.42216 -13.35302 -12.99443 -12.82152 -12.76137 -12.42644 -12.38983 -12.08764 -12.01053 -11.96510 -11.93934 -11.68271 -11.51799 -11.39008 -11.28145 -10.90867 -10.52500 -10.44105 -10.25289 -9.85942 -9.39240 -8.41955 -6.02540 1.30261 1.34015 1.43264 1.49562 1.54721 1.94697 2.21894 2.61319 2.73947 2.98711 3.14798 3.34174 3.39211 3.55738 3.76369 3.90683 3.96343 3.97002 4.11777 4.12801 4.16137 4.23704 4.28669 4.33723 4.34355 4.43266 4.49893 4.51081 4.53444 4.63635 4.70043 4.77841 4.79103 4.86789 4.91856 4.94948 5.01295 5.10482 5.20878 5.23107 5.24523 5.37582 5.52586 5.89857 6.02155 6.09232 6.35941 6.50087 6.58799 6.87357 7.05959 7.39164 7.94865 8.75519 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.001729 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.585026 B =16188.772303 C =16856.709293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.103 0.897 4 C 0.105 3.895 5 N -0.618 5.618 6 C 0.527 3.473 7 O -0.581 6.581 8 C 0.055 3.945 9 O -0.399 6.399 10 C 0.091 3.909 11 C -0.178 4.178 12 C -0.181 4.181 13 C -0.157 4.157 14 C 0.113 3.887 15 C 0.082 3.918 16 H 0.066 0.934 17 N -0.671 5.671 18 C 0.060 3.940 19 C 0.451 3.549 20 O -0.611 6.611 21 N -0.592 5.592 22 C -0.329 4.329 23 H 0.058 0.942 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.256 1.256 28 H -0.276 1.276 29 H -0.235 1.235 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.354 0.646 47 H 0.104 0.896 48 H 0.080 0.920 49 H 0.389 0.611 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.424 -12.077 29.035 36.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.121 0.879 4 C -0.017 4.017 5 N -0.353 5.353 6 C 0.317 3.683 7 O -0.461 6.461 8 C -0.024 4.024 9 O -0.319 6.319 10 C 0.016 3.984 11 C -0.197 4.197 12 C -0.218 4.218 13 C -0.194 4.194 14 C -0.011 4.011 15 C -0.029 4.029 16 H 0.084 0.916 17 N -0.305 5.305 18 C -0.072 4.072 19 C 0.239 3.761 20 O -0.495 6.495 21 N -0.234 5.234 22 C -0.458 4.458 23 H 0.076 0.924 24 C -0.211 4.211 25 N -0.574 5.574 26 Si 0.782 3.218 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.158 1.158 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.176 0.824 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.224 0.776 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.223 -12.532 29.059 36.518 hybrid contribution -0.446 -0.089 -1.583 1.647 sum -18.669 -12.621 27.476 35.536 Atomic orbital electron populations 1.21843 0.92598 1.01984 1.03282 1.22336 0.97280 1.00066 0.92766 0.87928 1.22763 1.02519 0.79259 0.97153 1.48966 1.62605 1.06289 1.17437 1.20598 0.77834 0.81728 0.88185 1.90721 1.54113 1.32369 1.68861 1.22252 1.02971 0.85686 0.91461 1.87973 1.84846 1.25256 1.33785 1.22238 0.98491 0.95091 0.82627 1.22150 0.99584 0.96471 1.01458 1.23167 0.92981 1.02710 1.02893 1.23070 1.02315 1.04132 0.89900 1.22381 0.98085 0.97674 0.82914 1.22492 0.92790 0.93038 0.94531 0.91572 1.60028 1.55712 1.06949 1.07853 1.21692 0.98295 0.98432 0.88828 1.20888 0.85591 0.87543 0.82125 1.90542 1.53517 1.34764 1.70663 1.42053 1.44201 1.28418 1.08685 1.19025 1.24605 1.09843 0.92318 0.92408 1.26062 0.97483 1.01305 0.96274 1.69799 1.38315 1.40039 1.09207 0.85406 0.78965 0.78332 0.79102 1.17988 1.20095 1.15829 0.89880 0.92521 0.93001 0.89531 0.86780 0.87364 0.87030 0.91013 0.91113 0.88882 0.87706 0.88743 0.87852 0.86989 0.91933 0.90845 0.82428 0.87757 0.90246 0.77585 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.90 71.98 0.64 -0.73 16 2 C -0.11 -1.37 3.34 -9.89 -0.03 -1.40 16 3 H 0.10 1.34 7.52 -2.39 -0.02 1.32 16 4 C 0.10 1.17 6.45 86.53 0.56 1.73 16 5 N -0.62 -11.91 3.33 -807.18 -2.69 -14.60 16 6 C 0.53 12.35 8.00 87.66 0.70 13.05 16 7 O -0.58 -20.35 16.78 16.01 0.27 -20.08 16 8 C 0.06 0.78 5.40 71.24 0.38 1.17 16 9 O -0.40 -8.14 9.88 -129.94 -1.28 -9.42 16 10 C 0.09 1.11 6.22 71.98 0.45 1.56 16 11 C -0.18 -2.41 6.06 -10.80 -0.07 -2.48 16 12 C -0.18 -1.89 10.18 30.59 0.31 -1.58 16 13 C -0.16 -1.32 10.25 30.59 0.31 -1.00 16 14 C 0.11 2.63 6.76 86.48 0.58 3.21 16 15 C 0.08 1.62 3.05 45.83 0.14 1.76 16 16 H 0.07 1.25 7.39 -2.39 -0.02 1.23 16 17 N -0.67 -17.91 5.91 -490.89 -2.90 -20.82 16 18 C 0.06 1.78 6.02 85.56 0.51 2.30 16 19 C 0.45 19.98 7.82 87.66 0.69 20.66 16 20 O -0.61 -32.98 15.78 -3.06 -0.05 -33.03 16 21 N -0.59 -27.86 5.09 -306.98 -1.56 -29.42 16 22 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 23 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.93 -56.30 13.96 21.66 0.30 -56.00 16 26 Si 0.96 39.17 27.74 68.60 1.90 41.07 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 28 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.23 -8.20 6.52 99.48 0.65 -7.56 16 30 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.49 7.02 -2.39 -0.02 0.47 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.82 7.95 -2.39 -0.02 0.81 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.57 7.87 -2.39 -0.02 0.55 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 0.88 8.03 -2.38 -0.02 0.86 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 1.66 7.90 -2.38 -0.02 1.64 16 45 H 0.07 1.94 8.06 -2.38 -0.02 1.92 16 46 H 0.35 9.62 7.75 -89.70 -0.70 8.92 16 47 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 48 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 49 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 50 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -86.25 411.87 0.16 -86.09 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.34 Total: 36.56 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.50 Total: 19.64 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -6.85 Total: -120.83 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -1.06 Total: -62.53 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.07 kcal Total: -86.25 0.16 -86.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.068 kcal (2) G-P(sol) polarization free energy of solvation -86.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds