Wall clock time and date at job start Tue Mar 31 2020 23:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30282 * 2 1 4 4 C 1.54392 * 110.33954 * 122.28063 * 2 1 3 5 5 N 1.48148 * 104.61546 * 142.73643 * 4 2 1 6 6 C 1.34780 * 127.83721 * 140.42024 * 5 4 2 7 7 O 1.21273 * 120.00106 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00012 * 359.97438 * 6 5 4 9 9 O 1.42891 * 109.47409 * 180.02562 * 8 6 5 10 10 C 1.42904 * 114.00418 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47339 * 179.97438 * 10 9 8 12 12 C 1.52995 * 117.49939 * 243.62081 * 11 10 9 13 13 C 1.52997 * 60.00119 * 252.50869 * 12 11 10 14 14 C 1.48309 * 104.39675 * 320.47370 * 5 4 2 15 15 C 1.54286 * 110.34346 * 237.81600 * 2 1 3 16 16 H 1.08999 * 110.33758 * 122.15852 * 15 2 1 17 17 N 1.46897 * 110.34188 * 0.02562 * 15 2 1 18 18 C 1.46902 * 110.99990 * 164.26369 * 17 15 2 19 19 C 1.50694 * 109.47379 * 180.02562 * 18 17 15 20 20 O 1.21290 * 120.00190 * 359.72406 * 19 18 17 21 21 N 1.34776 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99766 * 179.72257 * 21 19 18 23 23 H 1.07999 * 120.00394 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99941 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00192 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99914 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47380 * 60.00199 * 26 24 22 28 28 H 1.48508 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47077 * 299.99564 * 26 24 22 30 30 H 1.09004 * 109.47205 * 175.88719 * 1 2 3 31 31 H 1.08995 * 109.47432 * 295.88834 * 1 2 3 32 32 H 1.09003 * 109.46785 * 55.88971 * 1 2 3 33 33 H 1.08995 * 110.40911 * 261.52498 * 4 2 1 34 34 H 1.09007 * 110.40886 * 23.83933 * 4 2 1 35 35 H 1.09005 * 109.46844 * 300.00398 * 8 6 5 36 36 H 1.08999 * 109.46848 * 59.99832 * 8 6 5 37 37 H 1.09000 * 109.46789 * 300.00043 * 10 9 8 38 38 H 1.08996 * 109.47040 * 59.99578 * 10 9 8 39 39 H 1.08999 * 115.54829 * 29.33144 * 11 10 9 40 40 H 1.09001 * 117.50000 * 0.02562 * 12 11 10 41 41 H 1.09003 * 117.49564 * 145.01905 * 12 11 10 42 42 H 1.08994 * 117.50129 * 252.50816 * 13 12 11 43 43 H 1.09008 * 117.51500 * 107.47713 * 13 12 11 44 44 H 1.08994 * 110.38550 * 280.73801 * 14 5 4 45 45 H 1.08995 * 110.51300 * 158.24533 * 14 5 4 46 46 H 1.00898 * 111.00360 * 40.31497 * 17 15 2 47 47 H 1.09007 * 109.46958 * 60.00189 * 18 17 15 48 48 H 1.08993 * 109.47323 * 300.00520 * 18 17 15 49 49 H 0.96995 * 120.00284 * 359.72834 * 21 19 18 50 50 H 0.96996 * 120.00568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7731 1.2239 5 7 3.2663 -1.4824 0.7214 6 6 4.4423 -1.6678 1.3533 7 8 5.3364 -2.2760 0.8042 8 6 4.6463 -1.1192 2.7420 9 8 5.9630 -1.4424 3.1932 10 6 6.2605 -0.9660 4.5073 11 6 7.6877 -1.3677 4.8845 12 6 7.8636 -2.3240 6.0658 13 6 8.2400 -0.8484 6.2135 14 6 2.8819 -1.9417 -0.6353 15 6 2.0664 -0.7705 -1.2243 16 1 2.7081 -0.1267 -1.8258 17 7 0.9525 -1.2801 -2.0351 18 6 1.4140 -1.6812 -3.3709 19 6 0.2463 -2.1968 -4.1720 20 8 -0.8605 -2.2318 -3.6771 21 7 0.4330 -2.6246 -5.4363 22 6 -0.6283 -3.0990 -6.1631 23 1 -1.6139 -3.1294 -5.7228 24 6 -0.4357 -3.5406 -7.4665 25 7 0.7634 -3.5032 -8.0026 26 14 -1.8819 -4.1863 -8.4570 27 1 -2.9079 -3.1207 -8.5873 28 1 -1.4154 -4.5912 -9.8075 29 1 -2.4720 -5.3597 -7.7642 30 1 -0.3634 -1.0251 -0.0737 31 1 -0.3634 0.4487 0.9245 32 1 -0.3633 0.5763 -0.8509 33 1 2.3399 -0.0813 2.0206 34 1 1.3226 -1.4861 1.5793 35 1 4.5234 -0.0362 2.7265 36 1 3.9122 -1.5585 3.4175 37 1 6.1706 0.1201 4.5289 38 1 5.5602 -1.4027 5.2193 39 1 8.3852 -1.4619 4.0522 40 1 6.9625 -2.6673 6.5740 41 1 8.6768 -3.0478 6.0106 42 1 9.3007 -0.6014 6.2556 43 1 7.5865 -0.2202 6.8189 44 1 2.2666 -2.8392 -0.5721 45 1 3.7687 -2.1296 -1.2405 46 1 0.2103 -0.5995 -2.0984 47 1 2.1644 -2.4660 -3.2755 48 1 1.8505 -0.8209 -3.8780 49 1 1.3182 -2.5971 -5.8320 50 1 0.8978 -3.8111 -8.9125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274173649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:11 Heat of formation + Delta-G solvation = -74.803079 kcal Electronic energy + Delta-G solvation = -28815.199403 eV Core-core repulsion = 24650.879007 eV Total energy + Delta-G solvation = -4164.320396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39335 -39.03296 -38.33936 -37.79279 -36.66507 -34.78169 -33.81902 -32.34907 -31.19863 -30.13498 -28.41259 -27.02637 -26.29006 -25.79391 -24.08795 -22.89225 -22.82145 -21.21620 -19.82480 -19.44795 -19.19167 -17.93406 -17.72802 -16.87858 -16.77384 -16.35530 -16.09708 -15.70413 -15.44591 -15.33849 -14.88366 -14.57688 -14.43252 -14.19509 -13.81618 -13.72677 -13.66504 -13.11057 -12.89475 -12.68618 -12.41957 -12.33867 -12.12525 -11.99340 -11.95909 -11.70294 -11.54500 -11.52650 -11.17603 -11.06411 -10.91408 -10.88686 -10.80369 -10.74055 -10.44082 -10.21158 -9.98941 -9.93010 -9.49908 -8.94004 -8.47649 -8.12992 -7.96229 -6.41212 -3.82349 2.33659 2.41412 3.20335 3.21704 3.26317 3.30421 3.51309 3.90266 4.06023 4.15166 4.29343 4.34167 4.38196 4.42036 4.53669 4.62810 4.65728 4.75124 4.79082 4.83916 4.99622 5.08944 5.15094 5.15900 5.18371 5.19849 5.23908 5.32311 5.39206 5.43847 5.56971 5.64619 5.67610 5.71182 5.75154 5.79936 5.84931 5.95220 5.98522 6.06891 6.26502 6.32721 6.67305 7.15745 7.32475 7.55155 7.59754 7.97648 8.05940 8.61035 9.17713 9.54337 10.05349 10.76315 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.001664 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.422890 B =16827.760561 C =17665.528497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.080 0.920 4 C 0.106 3.894 5 N -0.624 5.624 6 C 0.534 3.466 7 O -0.518 6.518 8 C 0.051 3.949 9 O -0.360 6.360 10 C 0.092 3.908 11 C -0.154 4.154 12 C -0.177 4.177 13 C -0.173 4.173 14 C 0.116 3.884 15 C 0.074 3.926 16 H 0.053 0.947 17 N -0.658 5.658 18 C 0.046 3.954 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.357 0.643 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 9.891 26.205 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.017 4.017 5 N -0.361 5.361 6 C 0.322 3.678 7 O -0.393 6.393 8 C -0.029 4.029 9 O -0.279 6.279 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.214 4.214 13 C -0.210 4.210 14 C -0.007 4.007 15 C -0.037 4.037 16 H 0.071 0.929 17 N -0.294 5.294 18 C -0.086 4.086 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.180 0.820 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.995 8.718 26.238 29.400 hybrid contribution -0.153 0.731 -1.128 1.353 sum 9.842 9.449 25.110 28.578 Atomic orbital electron populations 1.21750 0.92967 1.04174 1.01426 1.22190 0.97439 0.98800 0.93889 0.90172 1.22546 0.86927 0.95566 0.96642 1.48883 1.12622 1.56467 1.18112 1.19756 0.80734 0.80358 0.86963 1.90756 1.40922 1.40559 1.67058 1.22124 0.86695 1.00248 0.93806 1.88011 1.29510 1.78527 1.31804 1.22074 0.94617 0.97880 0.83860 1.22115 0.97025 1.05109 0.92990 1.23081 1.03663 0.92980 1.01628 1.22981 1.01922 0.97253 0.98866 1.22470 0.98880 0.97560 0.81771 1.22391 0.92738 0.94436 0.94159 0.92918 1.60301 1.09328 1.46417 1.13381 1.21759 0.97534 1.00104 0.89251 1.19758 0.89691 0.84872 0.83054 1.90514 1.25611 1.60239 1.70512 1.41859 1.11495 1.55422 1.11106 1.19653 0.90663 1.38096 0.94658 0.87952 1.25265 0.97759 0.97653 0.97194 1.69602 1.21194 1.47429 1.15965 0.85917 0.80635 0.79331 0.78316 1.19938 1.20983 1.19874 0.89987 0.92639 0.92066 0.90593 0.90055 0.90308 0.90251 0.92629 0.92922 0.86573 0.88624 0.88472 0.88304 0.88648 0.89327 0.90034 0.81989 0.89550 0.93750 0.77434 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.81 37.16 0.29 -1.01 16 2 C -0.10 -0.91 3.66 -89.22 -0.33 -1.24 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 0.84 6.47 -2.41 -0.02 0.83 16 5 N -0.62 -6.98 3.32 -169.17 -0.56 -7.55 16 6 C 0.53 6.86 7.99 -10.98 -0.09 6.77 16 7 O -0.52 -9.16 16.77 -14.35 -0.24 -9.40 16 8 C 0.05 0.46 5.40 36.01 0.19 0.65 16 9 O -0.36 -4.04 9.88 -55.14 -0.54 -4.58 16 10 C 0.09 0.69 6.22 37.16 0.23 0.92 16 11 C -0.15 -1.15 6.06 -90.62 -0.55 -1.70 16 12 C -0.18 -1.10 10.18 -26.73 -0.27 -1.37 16 13 C -0.17 -0.93 10.25 -26.73 -0.27 -1.20 16 14 C 0.12 1.47 6.37 -2.32 -0.01 1.46 16 15 C 0.07 0.87 3.34 -66.31 -0.22 0.65 16 16 H 0.05 0.62 7.96 -51.93 -0.41 0.21 16 17 N -0.66 -9.74 4.95 -106.51 -0.53 -10.27 16 18 C 0.05 0.79 6.00 -4.98 -0.03 0.76 16 19 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 20 O -0.58 -15.40 15.78 5.55 0.09 -15.32 16 21 N -0.56 -14.18 5.29 -10.97 -0.06 -14.23 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.08 0.91 7.54 -51.93 -0.39 0.52 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.59 7.06 -51.93 -0.37 0.22 16 33 H 0.08 0.39 7.30 -51.93 -0.38 0.01 16 34 H 0.08 0.62 7.86 -51.92 -0.41 0.21 16 35 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.53 8.03 -51.93 -0.42 0.11 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.41 8.14 -51.92 -0.42 -0.02 16 44 H 0.09 1.22 8.06 -51.93 -0.42 0.81 16 45 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 46 H 0.36 5.35 5.89 -39.29 -0.23 5.12 16 47 H 0.09 1.41 7.87 -51.92 -0.41 1.00 16 48 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 49 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -34.43 410.52 -9.66 -44.09 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.30 Total: 11.25 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.40 Total: 7.64 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.42 Total: -55.88 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.70 Total: -29.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.43 -9.66 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.711 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds