Wall clock time and date at job start Tue Mar 31 2020 23:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30282 * 2 1 4 4 C 1.54392 * 110.33954 * 122.28063 * 2 1 3 5 5 N 1.48148 * 104.61546 * 142.73643 * 4 2 1 6 6 C 1.34780 * 127.83721 * 140.42024 * 5 4 2 7 7 O 1.21273 * 120.00106 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00012 * 359.97438 * 6 5 4 9 9 O 1.42891 * 109.47409 * 180.02562 * 8 6 5 10 10 C 1.42904 * 114.00418 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47339 * 179.97438 * 10 9 8 12 12 C 1.52995 * 117.49939 * 243.62081 * 11 10 9 13 13 C 1.52997 * 60.00119 * 252.50869 * 12 11 10 14 14 C 1.48309 * 104.39675 * 320.47370 * 5 4 2 15 15 C 1.54286 * 110.34346 * 237.81600 * 2 1 3 16 16 H 1.08999 * 110.33758 * 122.15852 * 15 2 1 17 17 N 1.46897 * 110.34188 * 0.02562 * 15 2 1 18 18 C 1.46902 * 110.99990 * 164.26369 * 17 15 2 19 19 C 1.50694 * 109.47379 * 180.02562 * 18 17 15 20 20 O 1.21290 * 120.00190 * 359.72406 * 19 18 17 21 21 N 1.34776 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99766 * 179.72257 * 21 19 18 23 23 H 1.07999 * 120.00394 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99941 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00192 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99914 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47380 * 60.00199 * 26 24 22 28 28 H 1.48508 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47077 * 299.99564 * 26 24 22 30 30 H 1.09004 * 109.47205 * 175.88719 * 1 2 3 31 31 H 1.08995 * 109.47432 * 295.88834 * 1 2 3 32 32 H 1.09003 * 109.46785 * 55.88971 * 1 2 3 33 33 H 1.08995 * 110.40911 * 261.52498 * 4 2 1 34 34 H 1.09007 * 110.40886 * 23.83933 * 4 2 1 35 35 H 1.09005 * 109.46844 * 300.00398 * 8 6 5 36 36 H 1.08999 * 109.46848 * 59.99832 * 8 6 5 37 37 H 1.09000 * 109.46789 * 300.00043 * 10 9 8 38 38 H 1.08996 * 109.47040 * 59.99578 * 10 9 8 39 39 H 1.08999 * 115.54829 * 29.33144 * 11 10 9 40 40 H 1.09001 * 117.50000 * 0.02562 * 12 11 10 41 41 H 1.09003 * 117.49564 * 145.01905 * 12 11 10 42 42 H 1.08994 * 117.50129 * 252.50816 * 13 12 11 43 43 H 1.09008 * 117.51500 * 107.47713 * 13 12 11 44 44 H 1.08994 * 110.38550 * 280.73801 * 14 5 4 45 45 H 1.08995 * 110.51300 * 158.24533 * 14 5 4 46 46 H 1.00898 * 111.00360 * 40.31497 * 17 15 2 47 47 H 1.09007 * 109.46958 * 60.00189 * 18 17 15 48 48 H 1.08993 * 109.47323 * 300.00520 * 18 17 15 49 49 H 0.96995 * 120.00284 * 359.72834 * 21 19 18 50 50 H 0.96996 * 120.00568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7731 1.2239 5 7 3.2663 -1.4824 0.7214 6 6 4.4423 -1.6678 1.3533 7 8 5.3364 -2.2760 0.8042 8 6 4.6463 -1.1192 2.7420 9 8 5.9630 -1.4424 3.1932 10 6 6.2605 -0.9660 4.5073 11 6 7.6877 -1.3677 4.8845 12 6 7.8636 -2.3240 6.0658 13 6 8.2400 -0.8484 6.2135 14 6 2.8819 -1.9417 -0.6353 15 6 2.0664 -0.7705 -1.2243 16 1 2.7081 -0.1267 -1.8258 17 7 0.9525 -1.2801 -2.0351 18 6 1.4140 -1.6812 -3.3709 19 6 0.2463 -2.1968 -4.1720 20 8 -0.8605 -2.2318 -3.6771 21 7 0.4330 -2.6246 -5.4363 22 6 -0.6283 -3.0990 -6.1631 23 1 -1.6139 -3.1294 -5.7228 24 6 -0.4357 -3.5406 -7.4665 25 7 0.7634 -3.5032 -8.0026 26 14 -1.8819 -4.1863 -8.4570 27 1 -2.9079 -3.1207 -8.5873 28 1 -1.4154 -4.5912 -9.8075 29 1 -2.4720 -5.3597 -7.7642 30 1 -0.3634 -1.0251 -0.0737 31 1 -0.3634 0.4487 0.9245 32 1 -0.3633 0.5763 -0.8509 33 1 2.3399 -0.0813 2.0206 34 1 1.3226 -1.4861 1.5793 35 1 4.5234 -0.0362 2.7265 36 1 3.9122 -1.5585 3.4175 37 1 6.1706 0.1201 4.5289 38 1 5.5602 -1.4027 5.2193 39 1 8.3852 -1.4619 4.0522 40 1 6.9625 -2.6673 6.5740 41 1 8.6768 -3.0478 6.0106 42 1 9.3007 -0.6014 6.2556 43 1 7.5865 -0.2202 6.8189 44 1 2.2666 -2.8392 -0.5721 45 1 3.7687 -2.1296 -1.2405 46 1 0.2103 -0.5995 -2.0984 47 1 2.1644 -2.4660 -3.2755 48 1 1.8505 -0.8209 -3.8780 49 1 1.3182 -2.5971 -5.8320 50 1 0.8978 -3.8111 -8.9125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:10 Heat of formation + Delta-G solvation = -98.906945 kcal Electronic energy + Delta-G solvation = -28816.244626 eV Core-core repulsion = 24650.879007 eV Total energy + Delta-G solvation = -4165.365618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31649 -40.21784 -39.53967 -38.82727 -37.29416 -36.20307 -35.57868 -33.42289 -33.11262 -31.00967 -29.34945 -28.06855 -27.18788 -26.84122 -25.69495 -23.83455 -23.25070 -21.75123 -21.18185 -20.52703 -20.36007 -19.89645 -18.55394 -17.85675 -17.52663 -17.41113 -17.08525 -16.96739 -16.66307 -16.35476 -16.06637 -15.83244 -15.53509 -15.35553 -15.18535 -14.83874 -14.63633 -14.10328 -13.95270 -13.65466 -13.56057 -13.44388 -13.38732 -13.04432 -13.00852 -12.86430 -12.74265 -12.42953 -12.38863 -12.12929 -12.08681 -12.04194 -11.77539 -11.62829 -11.49389 -11.38925 -11.27609 -10.92145 -10.51950 -10.33856 -10.01832 -9.87877 -9.37719 -8.46301 -5.95470 1.40081 1.41871 1.48512 1.52708 1.54166 2.04862 2.29024 2.64062 2.90355 3.00828 3.20945 3.36876 3.50722 3.57621 3.76997 3.90864 3.95324 3.97164 4.11930 4.16597 4.23168 4.27398 4.29016 4.34855 4.38132 4.46396 4.50615 4.52866 4.55959 4.66916 4.70226 4.77935 4.78178 4.82560 4.91086 5.00784 5.01492 5.16621 5.22142 5.24487 5.24783 5.40721 5.58166 5.87283 6.07678 6.09631 6.38655 6.50146 6.59365 7.04857 7.12089 7.55921 8.10342 8.70827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.001664 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.422890 B =16827.760561 C =17665.528497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.104 0.896 4 C 0.106 3.894 5 N -0.620 5.620 6 C 0.526 3.474 7 O -0.582 6.582 8 C 0.056 3.944 9 O -0.400 6.400 10 C 0.091 3.909 11 C -0.178 4.178 12 C -0.182 4.182 13 C -0.156 4.156 14 C 0.114 3.886 15 C 0.076 3.924 16 H 0.057 0.943 17 N -0.665 5.665 18 C 0.060 3.940 19 C 0.440 3.560 20 O -0.618 6.618 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.356 0.644 47 H 0.094 0.906 48 H 0.066 0.934 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 11.732 28.360 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.122 0.878 4 C -0.016 4.016 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.461 6.461 8 C -0.023 4.023 9 O -0.319 6.319 10 C 0.015 3.985 11 C -0.197 4.197 12 C -0.219 4.219 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.034 4.034 16 H 0.075 0.925 17 N -0.301 5.301 18 C -0.072 4.072 19 C 0.227 3.773 20 O -0.505 6.505 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.100 0.900 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.180 0.820 47 H 0.113 0.887 48 H 0.084 0.916 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.482 10.591 28.422 31.778 hybrid contribution 0.016 0.159 -1.741 1.748 sum 9.498 10.749 26.681 30.292 Atomic orbital electron populations 1.21686 0.92993 1.02664 1.02529 1.22220 0.97258 0.99593 0.92417 0.87809 1.22803 0.85530 0.96094 0.97171 1.48946 1.13275 1.55928 1.17313 1.20661 0.80085 0.79391 0.88314 1.90723 1.43067 1.43517 1.68789 1.22251 0.86648 1.02107 0.91273 1.87972 1.30796 1.79453 1.33726 1.22244 0.94583 0.99025 0.82605 1.22152 0.97239 1.07097 0.93168 1.23168 1.04048 0.93628 1.01085 1.23069 1.02514 0.96643 0.97024 1.22316 0.97887 0.97684 0.83073 1.22415 0.91773 0.94233 0.95020 0.92484 1.60260 1.10521 1.47185 1.12153 1.21589 0.94819 1.00943 0.89884 1.20761 0.90836 0.83118 0.82537 1.90482 1.27676 1.61212 1.71110 1.41947 1.11089 1.56171 1.11912 1.19663 0.90716 1.40229 0.95842 0.90049 1.26063 1.00437 0.97238 0.97583 1.69673 1.22605 1.47538 1.16409 0.84974 0.77525 0.78641 0.77107 1.19473 1.19652 1.19746 0.92506 0.89872 0.92882 0.86419 0.89561 0.86838 0.87260 0.90771 0.91253 0.88866 0.87795 0.88784 0.87803 0.86936 0.90946 0.92107 0.81998 0.88741 0.91642 0.77130 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.81 71.98 0.56 -1.63 16 2 C -0.10 -1.40 3.66 -9.88 -0.04 -1.43 16 3 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.11 1.30 6.47 86.54 0.56 1.86 16 5 N -0.62 -12.98 3.32 -807.52 -2.68 -15.66 16 6 C 0.53 13.07 7.99 87.66 0.70 13.77 16 7 O -0.58 -21.32 16.77 16.03 0.27 -21.05 16 8 C 0.06 0.84 5.40 71.24 0.38 1.23 16 9 O -0.40 -8.51 9.88 -129.94 -1.28 -9.79 16 10 C 0.09 1.17 6.22 71.98 0.45 1.61 16 11 C -0.18 -2.53 6.06 -10.80 -0.07 -2.59 16 12 C -0.18 -2.07 10.18 30.59 0.31 -1.76 16 13 C -0.16 -1.38 10.25 30.59 0.31 -1.06 16 14 C 0.11 2.92 6.37 86.50 0.55 3.47 16 15 C 0.08 1.70 3.34 45.82 0.15 1.86 16 16 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 17 N -0.66 -19.46 4.95 -490.90 -2.43 -21.89 16 18 C 0.06 2.06 6.00 85.55 0.51 2.57 16 19 C 0.44 20.79 7.82 87.66 0.69 21.47 16 20 O -0.62 -33.45 15.78 -3.06 -0.05 -33.50 16 21 N -0.57 -29.69 5.29 -306.99 -1.62 -31.32 16 22 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 26 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H 0.06 1.19 7.54 -2.38 -0.02 1.18 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.92 7.06 -2.39 -0.02 0.91 16 33 H 0.12 0.54 7.30 -2.39 -0.02 0.53 16 34 H 0.09 1.04 7.86 -2.38 -0.02 1.02 16 35 H 0.11 0.91 7.95 -2.38 -0.02 0.89 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.63 7.87 -2.39 -0.02 0.61 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 45 H 0.06 1.79 7.89 -2.39 -0.02 1.77 16 46 H 0.36 10.54 5.89 -89.70 -0.53 10.01 16 47 H 0.09 3.11 7.87 -2.38 -0.02 3.09 16 48 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -78.97 410.52 0.57 -78.40 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.31 Total: 38.94 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.36 Total: 20.82 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.45 Total: -118.98 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -1.06 Total: -64.34 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.97 0.57 -78.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.504 kcal (2) G-P(sol) polarization free energy of solvation -78.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds