Wall clock time and date at job start Tue Mar 31 2020 23:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99966 * 2 1 4 4 C 1.53001 * 109.47532 * 125.00091 * 3 2 1 5 5 O 1.42901 * 109.47096 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99647 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00242 * 180.02562 * 7 6 5 10 10 C 1.48124 * 127.03087 * 0.04543 * 9 7 6 11 11 C 1.55211 * 103.26072 * 140.64727 * 10 9 7 12 12 H 1.09001 * 110.81106 * 155.70294 * 11 10 9 13 13 C 1.52992 * 110.78143 * 279.10687 * 11 10 9 14 14 C 1.54616 * 102.71691 * 37.40056 * 11 10 9 15 15 H 1.09002 * 110.32963 * 97.06239 * 14 11 10 16 16 N 1.46895 * 110.32735 * 219.17665 * 14 11 10 17 17 C 1.46897 * 111.00467 * 203.56397 * 16 14 11 18 18 C 1.50695 * 109.47393 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00079 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00149 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99932 * 359.97438 * 21 20 18 23 23 C 1.38940 * 120.00135 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47072 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47365 * 120.00159 * 25 23 21 28 28 H 1.48510 * 109.46935 * 239.99991 * 25 23 21 29 29 C 1.47484 * 127.03699 * 180.02562 * 9 7 6 30 30 H 1.07996 * 119.99625 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00004 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.00183 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47350 * 4.99589 * 3 2 1 34 34 H 1.09001 * 109.47293 * 245.00031 * 3 2 1 35 35 H 1.08994 * 109.46998 * 59.99610 * 4 3 2 36 36 H 1.09000 * 109.46448 * 299.99837 * 4 3 2 37 37 H 1.09004 * 109.46999 * 60.00264 * 6 5 4 38 38 H 1.08993 * 109.47486 * 300.00214 * 6 5 4 39 39 H 1.08998 * 110.66026 * 259.11163 * 10 9 7 40 40 H 1.08991 * 110.66083 * 22.06625 * 10 9 7 41 41 H 1.08998 * 109.47323 * 173.29623 * 13 11 10 42 42 H 1.08993 * 109.47506 * 293.29519 * 13 11 10 43 43 H 1.09000 * 109.47251 * 53.29777 * 13 11 10 44 44 H 1.00904 * 111.00063 * 327.51863 * 16 14 11 45 45 H 1.09003 * 109.47002 * 300.00405 * 17 16 14 46 46 H 1.09000 * 109.46905 * 59.99385 * 17 16 14 47 47 H 0.97000 * 120.00039 * 359.97438 * 20 18 17 48 48 H 0.96998 * 119.99936 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.90926 * 86.11955 * 29 9 7 50 50 H 1.09001 * 109.91041 * 324.85016 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 8 3.7491 2.5710 1.1818 6 6 4.6877 2.7002 2.2516 7 6 5.3798 4.0354 2.1541 8 8 5.0967 4.8011 1.2571 9 7 6.3133 4.3786 3.0636 10 6 6.7777 3.5695 4.2141 11 6 8.3063 3.8374 4.2438 12 1 8.7090 3.6722 5.2432 13 6 9.0301 2.9660 3.2155 14 6 8.3976 5.3315 3.8568 15 1 8.4810 5.9498 4.7506 16 7 9.5466 5.5597 2.9705 17 6 9.9915 6.9582 3.0347 18 6 11.1692 7.1535 2.1151 19 8 11.5963 6.2194 1.4699 20 7 11.7486 8.3659 2.0102 21 6 12.8198 8.5437 1.1731 22 1 13.1995 7.7122 0.5981 23 6 13.4167 9.7936 1.0647 24 7 12.9543 10.8056 1.7640 25 14 14.8757 10.0361 -0.0764 26 1 15.1995 8.7507 -0.7459 27 1 14.5388 11.0571 -1.1006 28 1 16.0492 10.4930 0.7108 29 6 7.0817 5.6363 3.1167 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5067 1.0921 36 1 2.4772 1.2357 2.1129 37 1 5.4273 1.9023 2.1844 38 1 4.1640 2.6308 3.2049 39 1 6.3093 3.9098 5.1376 40 1 6.5737 2.5119 4.0479 41 1 10.0804 3.2541 3.1701 42 1 8.9531 1.9189 3.5080 43 1 8.5728 3.1043 2.2358 44 1 10.3032 4.9292 3.1896 45 1 9.1766 7.6133 2.7264 46 1 10.2848 7.1996 4.0564 47 1 11.4073 9.1128 2.5264 48 1 13.3714 11.6781 1.6886 49 1 6.5167 6.3939 3.6600 50 1 7.2960 5.9834 2.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274298809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:24 Heat of formation + Delta-G solvation = -84.879617 kcal Electronic energy + Delta-G solvation = -28929.584888 eV Core-core repulsion = 24764.827541 eV Total energy + Delta-G solvation = -4164.757347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40548 -38.86408 -38.12526 -37.52353 -35.34807 -34.74309 -33.79242 -32.14856 -31.18533 -30.52931 -29.33982 -27.57905 -26.72852 -25.92549 -24.07770 -23.38395 -22.60364 -20.33889 -19.83774 -19.57808 -19.14513 -17.88975 -17.54315 -17.05979 -16.75101 -16.48211 -15.89549 -15.63306 -15.39057 -15.12923 -14.80643 -14.46870 -14.35538 -13.94753 -13.78763 -13.72046 -13.60825 -13.38718 -13.08964 -12.78088 -12.57541 -12.27416 -12.18371 -11.97904 -11.79794 -11.70685 -11.59595 -11.52240 -11.49818 -11.12345 -11.06102 -10.98352 -10.82667 -10.33170 -10.21265 -10.06695 -9.88281 -9.78807 -9.50883 -8.84311 -8.45463 -8.10304 -7.94925 -6.40620 -3.81345 1.78362 2.45546 2.51285 3.17525 3.28151 3.35468 3.52489 3.91390 4.06314 4.17882 4.23166 4.30082 4.51200 4.58244 4.64660 4.71312 4.76863 4.82174 4.89414 4.93825 5.00830 5.05076 5.10812 5.19405 5.22788 5.30311 5.38059 5.40047 5.53379 5.54180 5.61962 5.63130 5.73678 5.80171 5.93029 5.97721 6.02796 6.11174 6.17453 6.28095 6.29856 6.35891 6.72186 7.18361 7.37494 7.56699 7.61731 8.06949 8.07634 8.62229 9.19179 9.55436 10.06657 10.77173 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.001754 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.567146 B =15959.884593 C =16668.375038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.364 6.364 6 C 0.052 3.948 7 C 0.532 3.468 8 O -0.515 6.515 9 N -0.616 5.616 10 C 0.103 3.897 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.138 4.138 14 C 0.076 3.924 15 H 0.062 0.938 16 N -0.658 5.658 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.354 0.646 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.065 0.935 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 -19.670 9.122 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.132 4.132 4 C -0.011 4.011 5 O -0.282 6.282 6 C -0.028 4.028 7 C 0.319 3.681 8 O -0.389 6.389 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.196 4.196 14 C -0.036 4.036 15 H 0.079 0.921 16 N -0.294 5.294 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.008 4.008 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.177 0.823 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.444 -19.463 7.402 29.182 hybrid contribution 1.016 0.542 0.980 1.512 sum -19.428 -18.922 8.382 28.385 Atomic orbital electron populations 1.23920 0.95898 1.02102 1.00545 1.22800 0.96015 0.97957 1.00413 1.20648 0.97950 0.95939 0.98618 1.22495 0.94001 0.86023 0.98583 1.88007 1.54322 1.37446 1.48413 1.22124 0.93011 0.95854 0.91790 1.19767 0.79202 0.88085 0.81021 1.90768 1.62806 1.52462 1.32886 1.48585 1.39190 1.19798 1.27703 1.22691 0.94097 0.96133 0.89160 1.22503 0.94860 0.94935 1.00407 0.89260 1.21645 1.01199 0.97569 0.99151 1.22452 0.91890 0.95483 0.93737 0.92056 1.60303 1.10065 1.04642 1.54358 1.21767 0.97985 0.90726 0.98048 1.19778 0.86285 0.84257 0.87030 1.90524 1.66098 1.41150 1.48940 1.41867 1.29104 1.09064 1.39978 1.19754 1.06636 0.96449 1.19990 0.87870 1.25256 0.99438 0.95059 0.98176 1.69620 1.41963 1.01430 1.41277 0.85803 0.80434 0.78544 0.79581 1.19224 1.20733 1.20799 1.22161 0.90197 0.85266 1.03200 0.88283 0.88365 0.87141 0.90429 0.89774 0.92925 0.93052 0.90269 0.90462 0.90564 0.90134 0.91324 0.93006 0.91590 0.82252 0.89574 0.93728 0.77468 0.91939 0.91664 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 14.32 29.01 0.42 -0.63 16 2 C -0.15 -0.93 9.52 -36.03 -0.34 -1.27 16 3 C -0.09 -0.71 6.03 -27.88 -0.17 -0.88 16 4 C 0.07 0.51 5.92 37.16 0.22 0.73 16 5 O -0.36 -4.25 9.88 -55.14 -0.54 -4.79 16 6 C 0.05 0.49 5.35 36.00 0.19 0.68 16 7 C 0.53 7.17 7.97 -10.99 -0.09 7.08 16 8 O -0.52 -9.61 16.84 -14.36 -0.24 -9.85 16 9 N -0.62 -6.97 3.19 -169.58 -0.54 -7.51 16 10 C 0.10 0.74 6.41 -1.98 -0.01 0.73 16 11 C -0.11 -0.92 3.58 -88.60 -0.32 -1.23 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.14 -1.39 8.50 37.15 0.32 -1.07 16 14 C 0.08 0.85 3.19 -66.33 -0.21 0.64 16 15 H 0.06 0.61 7.84 -51.93 -0.41 0.21 16 16 N -0.66 -10.09 5.16 -106.54 -0.55 -10.64 16 17 C 0.05 0.81 6.01 -4.98 -0.03 0.78 16 18 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 19 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 20 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 21 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.11 1.45 6.72 -2.97 -0.02 1.43 16 30 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 32 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.08 0.62 7.79 -51.93 -0.40 0.22 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.57 7.91 -51.93 -0.41 0.16 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.42 7.15 -51.93 -0.37 0.05 16 41 H 0.07 0.79 6.22 -51.93 -0.32 0.46 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.35 5.52 6.01 -39.29 -0.24 5.28 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 50 H 0.09 1.52 7.84 -51.93 -0.41 1.12 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -35.62 414.05 -8.57 -44.19 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.29 Total: 10.96 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.37 Total: 9.25 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.43 Total: -56.48 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.70 Total: -30.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.62 -8.57 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274298809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.689 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds