Wall clock time and date at job start Tue Mar 31 2020 23:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99966 * 2 1 4 4 C 1.53001 * 109.47532 * 125.00091 * 3 2 1 5 5 O 1.42901 * 109.47096 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99647 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00242 * 180.02562 * 7 6 5 10 10 C 1.48124 * 127.03087 * 0.04543 * 9 7 6 11 11 C 1.55211 * 103.26072 * 140.64727 * 10 9 7 12 12 H 1.09001 * 110.81106 * 155.70294 * 11 10 9 13 13 C 1.52992 * 110.78143 * 279.10687 * 11 10 9 14 14 C 1.54616 * 102.71691 * 37.40056 * 11 10 9 15 15 H 1.09002 * 110.32963 * 97.06239 * 14 11 10 16 16 N 1.46895 * 110.32735 * 219.17665 * 14 11 10 17 17 C 1.46897 * 111.00467 * 203.56397 * 16 14 11 18 18 C 1.50695 * 109.47393 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00079 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00149 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99932 * 359.97438 * 21 20 18 23 23 C 1.38940 * 120.00135 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47072 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47365 * 120.00159 * 25 23 21 28 28 H 1.48510 * 109.46935 * 239.99991 * 25 23 21 29 29 C 1.47484 * 127.03699 * 180.02562 * 9 7 6 30 30 H 1.07996 * 119.99625 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00004 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.00183 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47350 * 4.99589 * 3 2 1 34 34 H 1.09001 * 109.47293 * 245.00031 * 3 2 1 35 35 H 1.08994 * 109.46998 * 59.99610 * 4 3 2 36 36 H 1.09000 * 109.46448 * 299.99837 * 4 3 2 37 37 H 1.09004 * 109.46999 * 60.00264 * 6 5 4 38 38 H 1.08993 * 109.47486 * 300.00214 * 6 5 4 39 39 H 1.08998 * 110.66026 * 259.11163 * 10 9 7 40 40 H 1.08991 * 110.66083 * 22.06625 * 10 9 7 41 41 H 1.08998 * 109.47323 * 173.29623 * 13 11 10 42 42 H 1.08993 * 109.47506 * 293.29519 * 13 11 10 43 43 H 1.09000 * 109.47251 * 53.29777 * 13 11 10 44 44 H 1.00904 * 111.00063 * 327.51863 * 16 14 11 45 45 H 1.09003 * 109.47002 * 300.00405 * 17 16 14 46 46 H 1.09000 * 109.46905 * 59.99385 * 17 16 14 47 47 H 0.97000 * 120.00039 * 359.97438 * 20 18 17 48 48 H 0.96998 * 119.99936 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.90926 * 86.11955 * 29 9 7 50 50 H 1.09001 * 109.91041 * 324.85016 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 8 3.7491 2.5710 1.1818 6 6 4.6877 2.7002 2.2516 7 6 5.3798 4.0354 2.1541 8 8 5.0967 4.8011 1.2571 9 7 6.3133 4.3786 3.0636 10 6 6.7777 3.5695 4.2141 11 6 8.3063 3.8374 4.2438 12 1 8.7090 3.6722 5.2432 13 6 9.0301 2.9660 3.2155 14 6 8.3976 5.3315 3.8568 15 1 8.4810 5.9498 4.7506 16 7 9.5466 5.5597 2.9705 17 6 9.9915 6.9582 3.0347 18 6 11.1692 7.1535 2.1151 19 8 11.5963 6.2194 1.4699 20 7 11.7486 8.3659 2.0102 21 6 12.8198 8.5437 1.1731 22 1 13.1995 7.7122 0.5981 23 6 13.4167 9.7936 1.0647 24 7 12.9543 10.8056 1.7640 25 14 14.8757 10.0361 -0.0764 26 1 15.1995 8.7507 -0.7459 27 1 14.5388 11.0571 -1.1006 28 1 16.0492 10.4930 0.7108 29 6 7.0817 5.6363 3.1167 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5067 1.0921 36 1 2.4772 1.2357 2.1129 37 1 5.4273 1.9023 2.1844 38 1 4.1640 2.6308 3.2049 39 1 6.3093 3.9098 5.1376 40 1 6.5737 2.5119 4.0479 41 1 10.0804 3.2541 3.1701 42 1 8.9531 1.9189 3.5080 43 1 8.5728 3.1043 2.2358 44 1 10.3032 4.9292 3.1896 45 1 9.1766 7.6133 2.7264 46 1 10.2848 7.1996 4.0564 47 1 11.4073 9.1128 2.5264 48 1 13.3714 11.6781 1.6886 49 1 6.5167 6.3939 3.6600 50 1 7.2960 5.9834 2.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274298809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:23 Heat of formation + Delta-G solvation = -110.923006 kcal Electronic energy + Delta-G solvation = -28930.714214 eV Core-core repulsion = 24764.827541 eV Total energy + Delta-G solvation = -4165.886674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32452 -40.19890 -39.43367 -38.49775 -36.20550 -35.88681 -35.55672 -33.34877 -32.99715 -31.25755 -30.16987 -28.69293 -27.47619 -27.31685 -25.72842 -23.95774 -23.53440 -21.22264 -20.82977 -20.58722 -20.34761 -19.89317 -18.45106 -17.88702 -17.78962 -17.28481 -17.21169 -16.74768 -16.49296 -16.24976 -16.14676 -15.82771 -15.40288 -15.34426 -15.05532 -14.66958 -14.33238 -14.29270 -14.06948 -13.96370 -13.61772 -13.45827 -13.33950 -13.12676 -13.11343 -12.89211 -12.81872 -12.51708 -12.42061 -12.15800 -12.13176 -11.98672 -11.97333 -11.81169 -11.63272 -11.52623 -10.89672 -10.70885 -10.35132 -10.26898 -10.02557 -9.77066 -9.30478 -8.48061 -5.96801 1.32496 1.35299 1.40535 1.53396 1.54775 1.68250 2.04052 2.28064 2.84205 2.94079 3.19391 3.36981 3.51690 3.54298 3.81922 3.99620 4.09358 4.12416 4.17198 4.22827 4.27344 4.28851 4.31264 4.34523 4.45389 4.48554 4.50333 4.57387 4.63005 4.67252 4.74767 4.86070 4.89481 4.92536 5.02315 5.07142 5.09390 5.15395 5.29427 5.39865 5.53131 5.72817 5.85466 5.89974 6.09560 6.11780 6.43842 6.52017 6.58928 7.11473 7.11704 7.55040 8.10433 8.69555 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.001754 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.567146 B =15959.884593 C =16668.375038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C -0.097 4.097 4 C 0.064 3.936 5 O -0.404 6.404 6 C 0.058 3.942 7 C 0.519 3.481 8 O -0.586 6.586 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.100 4.100 12 H 0.125 0.875 13 C -0.135 4.135 14 C 0.077 3.923 15 H 0.088 0.912 16 N -0.678 5.678 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.268 1.268 29 C 0.112 3.888 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.352 0.648 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.078 0.922 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 -21.446 11.897 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C -0.134 4.134 4 C -0.012 4.012 5 O -0.324 6.324 6 C -0.021 4.021 7 C 0.309 3.691 8 O -0.466 6.466 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.119 4.119 12 H 0.143 0.857 13 C -0.193 4.193 14 C -0.034 4.034 15 H 0.106 0.894 16 N -0.314 5.314 17 C -0.069 4.069 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.193 1.193 29 C -0.012 4.012 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.176 0.824 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.087 -21.255 10.246 31.646 hybrid contribution 1.183 1.063 0.119 1.594 sum -19.905 -20.192 10.366 30.189 Atomic orbital electron populations 1.24084 0.95899 1.02736 0.99727 1.22810 0.96154 0.97594 1.01109 1.20654 0.97863 0.96578 0.98294 1.22662 0.94210 0.85091 0.99221 1.87969 1.55192 1.39491 1.49712 1.22248 0.93467 0.93618 0.92810 1.20699 0.79175 0.89082 0.80156 1.90726 1.65279 1.54788 1.35797 1.48706 1.38028 1.19801 1.28295 1.23053 0.92835 0.97404 0.88582 1.22570 0.95922 0.92062 1.01351 0.85749 1.21600 0.99813 0.99775 0.98112 1.22570 0.89065 0.98347 0.93374 0.89439 1.60223 1.11062 1.03335 1.56753 1.21595 0.95181 0.92395 0.97697 1.20920 0.86973 0.82948 0.86728 1.90489 1.67607 1.42285 1.50655 1.41938 1.29062 1.09951 1.40094 1.19699 1.08580 0.96511 1.21625 0.90440 1.26028 1.01614 0.94304 0.99248 1.69676 1.42819 1.01789 1.41777 0.84876 0.77504 0.78140 0.77833 1.19896 1.19782 1.19301 1.22119 0.91709 0.86617 1.00779 0.86772 0.88676 0.85710 0.91642 0.91208 0.91229 0.91221 0.87640 0.86755 0.87325 0.87199 0.93305 0.90131 0.95003 0.82447 0.88773 0.90650 0.76976 0.91295 0.90433 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 14.32 67.78 0.97 -0.90 16 2 C -0.16 -1.73 9.52 25.64 0.24 -1.49 16 3 C -0.10 -1.45 6.03 29.85 0.18 -1.27 16 4 C 0.06 0.90 5.92 71.98 0.43 1.32 16 5 O -0.40 -9.27 9.88 -129.94 -1.28 -10.55 16 6 C 0.06 0.97 5.35 71.23 0.38 1.35 16 7 C 0.52 13.97 7.97 87.66 0.70 14.67 16 8 O -0.59 -23.30 16.84 15.99 0.27 -23.03 16 9 N -0.61 -13.06 3.19 -808.81 -2.58 -15.64 16 10 C 0.10 1.04 6.41 86.83 0.56 1.60 16 11 C -0.10 -1.34 3.58 -9.49 -0.03 -1.38 16 12 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 13 C -0.14 -2.48 8.50 71.98 0.61 -1.87 16 14 C 0.08 1.58 3.19 45.81 0.15 1.72 16 15 H 0.09 1.41 7.84 -2.39 -0.02 1.39 16 16 N -0.68 -20.68 5.16 -490.97 -2.53 -23.21 16 17 C 0.06 2.17 6.01 85.56 0.51 2.68 16 18 C 0.44 21.14 7.82 87.65 0.69 21.83 16 19 O -0.62 -35.25 15.78 -3.06 -0.05 -35.30 16 20 N -0.57 -29.97 5.29 -306.99 -1.62 -31.59 16 21 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 24 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 25 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 C 0.11 2.79 6.72 86.54 0.58 3.37 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.09 0.98 7.84 -2.91 -0.02 0.96 16 32 H 0.13 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.06 1.10 7.79 -2.39 -0.02 1.08 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 1.19 7.91 -2.38 -0.02 1.17 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.11 0.54 7.15 -2.39 -0.02 0.52 16 41 H 0.05 1.09 6.22 -2.39 -0.01 1.08 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.03 0.79 8.07 -2.39 -0.02 0.77 16 44 H 0.35 10.95 6.01 -89.69 -0.54 10.41 16 45 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 47 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 48 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 49 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 Total: -1.00 -84.41 414.05 1.42 -82.99 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.33 Total: 37.70 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 7.24 Total: 22.85 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -6.46 Total: -120.44 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -1.06 Total: -68.88 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -84.41 1.42 -82.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274298809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.929 kcal (2) G-P(sol) polarization free energy of solvation -84.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds