Wall clock time and date at job start Tue Mar 31 2020 23:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20758 * 120.00189 * 2 1 4 4 C 1.50700 * 119.99812 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46896 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.47045 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.64706 * 0.02562 * 9 7 6 11 11 C 1.54907 * 104.83006 * 204.09163 * 10 9 7 12 12 H 1.08999 * 111.00683 * 81.10657 * 11 10 9 13 13 N 1.46901 * 111.00481 * 204.91739 * 11 10 9 14 14 C 1.46902 * 110.99844 * 273.54527 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.55154 * 101.58536 * 322.99172 * 11 10 9 27 27 C 1.47021 * 125.64444 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.88196 * 298.38959 * 27 9 7 29 29 C 1.52994 * 109.88381 * 59.40538 * 27 9 7 30 30 H 1.08998 * 109.47467 * 270.00289 * 1 2 3 31 31 H 1.08996 * 109.46906 * 30.00518 * 1 2 3 32 32 H 1.09001 * 109.47018 * 150.00561 * 1 2 3 33 33 H 1.08999 * 109.47072 * 60.00391 * 4 2 1 34 34 H 1.09008 * 109.47410 * 300.00084 * 4 2 1 35 35 H 1.08999 * 109.47143 * 60.00186 * 5 4 2 36 36 H 1.08998 * 109.47335 * 299.99716 * 5 4 2 37 37 H 1.08992 * 109.47053 * 59.99573 * 6 5 4 38 38 H 1.08998 * 109.46635 * 299.99915 * 6 5 4 39 39 H 1.08997 * 110.36783 * 85.25407 * 10 9 7 40 40 H 1.09000 * 110.46457 * 322.97801 * 10 9 7 41 41 H 1.00895 * 111.00207 * 37.49870 * 13 11 10 42 42 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 43 43 H 1.09000 * 109.47732 * 300.00127 * 14 13 11 44 44 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 45 45 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.72660 * 153.86573 * 26 11 10 47 47 H 1.09004 * 110.71821 * 277.14111 * 26 11 10 48 48 H 1.09001 * 109.47363 * 58.54698 * 29 27 9 49 49 H 1.09008 * 109.46883 * 178.54153 * 29 27 9 50 50 H 1.08994 * 109.47391 * 298.54015 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5297 -2.3506 0.0011 7 6 6.0114 -2.0753 0.0022 8 8 6.4157 -0.9318 0.0035 9 7 6.8872 -3.0997 0.0029 10 6 6.5349 -4.5312 0.0021 11 6 7.7669 -5.2431 0.6145 12 1 7.7502 -5.1859 1.7029 13 7 7.8459 -6.6392 0.1646 14 6 7.0464 -7.5171 1.0295 15 6 7.1512 -8.9377 0.5377 16 8 7.8260 -9.1938 -0.4372 17 7 6.5001 -9.9246 1.1846 18 6 6.6000 -11.2179 0.7406 19 1 7.2008 -11.4458 -0.1275 20 6 5.9283 -12.2352 1.4072 21 7 5.1969 -11.9578 2.4632 22 14 6.0639 -13.9972 0.8017 23 1 6.9404 -14.0429 -0.3961 24 1 6.6456 -14.8453 1.8730 25 1 4.7138 -14.5041 0.4473 26 6 8.9339 -4.4037 0.0306 27 6 8.3520 -2.9746 0.0035 28 1 8.6803 -2.4577 -0.8983 29 6 8.8076 -2.2003 1.2419 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9972 -1.8770 -0.8892 34 1 1.9971 -1.8764 0.8909 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4542 -0.8889 37 1 4.2666 -2.9220 -0.8890 38 1 4.2661 -2.9223 0.8908 39 1 6.3633 -4.8791 -1.0165 40 1 5.6514 -4.7066 0.6159 41 1 7.5614 -6.7251 -0.7996 42 1 6.0037 -7.2003 1.0044 43 1 7.4196 -7.4578 2.0519 44 1 5.9607 -9.7200 1.9644 45 1 4.7276 -12.6679 2.9284 46 1 9.8072 -4.4524 0.6810 47 1 9.1829 -4.7378 -0.9767 48 1 8.4695 -2.7186 2.1392 49 1 9.8957 -2.1339 1.2490 50 1 8.3826 -1.1969 1.2198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278346441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:15 Heat of formation + Delta-G solvation = -120.449037 kcal Electronic energy + Delta-G solvation = -28954.403889 eV Core-core repulsion = 24788.104136 eV Total energy + Delta-G solvation = -4166.299753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57701 -39.79735 -38.55347 -37.83174 -34.94899 -34.57756 -33.85051 -32.25051 -31.30325 -30.99535 -29.94675 -28.21649 -26.37578 -25.94517 -24.17350 -23.42485 -21.86818 -20.66373 -19.98693 -19.36478 -19.09116 -17.97774 -17.32257 -16.61452 -16.52338 -16.08512 -15.98124 -15.61664 -15.27365 -15.03213 -14.88819 -14.55308 -14.20279 -13.99816 -13.76509 -13.69847 -13.33174 -13.21366 -12.99830 -12.95721 -12.73250 -12.52159 -12.40066 -12.25753 -12.10275 -12.03865 -11.88635 -11.70899 -11.57799 -11.42960 -11.12209 -11.11694 -11.06677 -10.76443 -10.38707 -10.27896 -10.11586 -9.84019 -9.57955 -8.89094 -8.55965 -8.19136 -8.02543 -6.47674 -3.88600 1.60187 2.45852 2.69725 3.12156 3.23431 3.30414 3.63971 3.82744 3.93872 4.14499 4.26484 4.42445 4.48512 4.57847 4.61460 4.70602 4.80677 4.89303 4.90353 4.92513 5.04299 5.07212 5.10352 5.15103 5.16550 5.20188 5.25898 5.26410 5.38194 5.46872 5.56700 5.59088 5.67020 5.76633 5.78017 5.84675 5.89466 5.93982 6.00972 6.10683 6.18509 6.26678 7.05899 7.15125 7.31104 7.49048 7.50099 7.99492 8.00186 8.54382 9.12025 9.47554 9.98446 10.69978 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.002070 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.139200 B =13524.971816 C =15808.448638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.352 3.648 3 O -0.455 6.455 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.138 4.138 7 C 0.528 3.472 8 O -0.538 6.538 9 N -0.613 5.613 10 C 0.065 3.935 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.652 5.652 14 C 0.049 3.951 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.117 4.117 27 C 0.133 3.867 28 H 0.074 0.926 29 C -0.162 4.162 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.065 0.935 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 19.798 -1.545 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.227 3.773 3 O -0.329 6.329 4 C -0.212 4.212 5 C -0.134 4.134 6 C -0.178 4.178 7 C 0.317 3.683 8 O -0.415 6.415 9 N -0.348 5.348 10 C -0.060 4.060 11 C -0.032 4.032 12 H 0.113 0.887 13 N -0.283 5.283 14 C -0.084 4.084 15 C 0.224 3.776 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.156 4.156 27 C 0.030 3.970 28 H 0.093 0.907 29 C -0.220 4.220 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.073 20.577 -1.762 21.266 hybrid contribution -1.433 -0.885 0.050 1.686 sum -6.506 19.691 -1.712 20.809 Atomic orbital electron populations 1.22309 0.94496 1.04798 1.04697 1.24646 0.91947 0.90363 0.70342 1.90448 1.71956 1.35217 1.35272 1.22197 0.96471 0.97637 1.04912 1.21150 0.91709 0.95780 1.04770 1.21689 0.91519 1.00071 1.04513 1.20361 0.88180 0.83932 0.75849 1.90707 1.80135 1.20779 1.49862 1.48544 1.06656 1.06122 1.73441 1.23290 1.00257 0.80933 1.01545 1.22799 0.92564 0.87900 0.99981 0.88711 1.60127 1.58185 1.02877 1.07160 1.21742 0.95619 0.93007 0.97996 1.19773 0.84919 0.86134 0.86725 1.90536 1.43837 1.83513 1.28824 1.41870 1.43435 1.06682 1.27931 1.19755 1.28242 0.82172 1.12711 0.87825 1.25270 0.96307 1.00476 0.95898 1.69614 1.31234 1.34152 1.19245 0.85799 0.78064 0.81660 0.78828 1.19191 1.20721 1.20749 1.22732 0.98220 0.91605 1.03004 1.21611 0.79486 0.96837 0.99046 0.90749 1.22140 1.01304 1.01425 0.97164 0.88663 0.89799 0.89599 0.88182 0.88143 0.90616 0.90641 0.88824 0.88799 0.90947 0.90488 0.82649 0.93714 0.89400 0.77464 0.91882 0.89332 0.89884 0.92515 0.91647 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.87 10.25 36.01 0.37 -0.50 16 2 C 0.35 2.60 7.27 -29.03 -0.21 2.39 16 3 O -0.46 -5.47 16.72 6.00 0.10 -5.36 16 4 C -0.17 -0.98 5.62 -27.88 -0.16 -1.14 16 5 C -0.10 -0.84 3.79 -26.73 -0.10 -0.94 16 6 C -0.14 -1.09 4.71 -27.88 -0.13 -1.22 16 7 C 0.53 6.04 7.63 -10.99 -0.08 5.96 16 8 O -0.54 -8.08 14.87 5.55 0.08 -8.00 16 9 N -0.61 -6.34 3.08 -163.02 -0.50 -6.84 16 10 C 0.07 0.60 6.27 -2.53 -0.02 0.58 16 11 C 0.08 0.83 3.32 -65.57 -0.22 0.61 16 12 H 0.09 0.98 7.92 -51.93 -0.41 0.56 16 13 N -0.65 -9.10 6.00 -105.72 -0.63 -9.73 16 14 C 0.05 0.76 6.04 -4.97 -0.03 0.73 16 15 C 0.44 9.70 7.82 -10.98 -0.09 9.62 16 16 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 17 N -0.56 -13.56 5.29 -10.96 -0.06 -13.61 16 18 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -23.74 13.05 55.50 0.72 -23.01 16 22 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.12 -1.14 6.19 -24.90 -0.15 -1.30 16 27 C 0.13 1.36 3.49 -66.95 -0.23 1.13 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 C -0.16 -1.63 9.07 37.15 0.34 -1.29 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.20 8.12 -51.93 -0.42 -0.23 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 39 H 0.07 0.65 7.80 -51.93 -0.41 0.25 16 40 H 0.08 0.61 7.48 -51.93 -0.39 0.22 16 41 H 0.35 5.07 8.00 -39.29 -0.31 4.76 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 44 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 45 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 46 H 0.09 0.82 7.83 -51.93 -0.41 0.42 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 50 H 0.07 0.84 6.73 -51.93 -0.35 0.49 16 LS Contribution 413.04 15.07 6.22 6.22 Total: -1.00 -34.40 413.04 -8.38 -42.78 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.42 Total: 10.20 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.96 Total: 6.90 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.47 Total: -53.20 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: 0.27 Total: -28.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.40 -8.38 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278346441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.667 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds