Wall clock time and date at job start Tue Mar 31 2020 23:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20758 * 120.00189 * 2 1 4 4 C 1.50700 * 119.99812 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46896 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.47045 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.64706 * 0.02562 * 9 7 6 11 11 C 1.54907 * 104.83006 * 204.09163 * 10 9 7 12 12 H 1.08999 * 111.00683 * 81.10657 * 11 10 9 13 13 N 1.46901 * 111.00481 * 204.91739 * 11 10 9 14 14 C 1.46902 * 110.99844 * 273.54527 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.55154 * 101.58536 * 322.99172 * 11 10 9 27 27 C 1.47021 * 125.64444 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.88196 * 298.38959 * 27 9 7 29 29 C 1.52994 * 109.88381 * 59.40538 * 27 9 7 30 30 H 1.08998 * 109.47467 * 270.00289 * 1 2 3 31 31 H 1.08996 * 109.46906 * 30.00518 * 1 2 3 32 32 H 1.09001 * 109.47018 * 150.00561 * 1 2 3 33 33 H 1.08999 * 109.47072 * 60.00391 * 4 2 1 34 34 H 1.09008 * 109.47410 * 300.00084 * 4 2 1 35 35 H 1.08999 * 109.47143 * 60.00186 * 5 4 2 36 36 H 1.08998 * 109.47335 * 299.99716 * 5 4 2 37 37 H 1.08992 * 109.47053 * 59.99573 * 6 5 4 38 38 H 1.08998 * 109.46635 * 299.99915 * 6 5 4 39 39 H 1.08997 * 110.36783 * 85.25407 * 10 9 7 40 40 H 1.09000 * 110.46457 * 322.97801 * 10 9 7 41 41 H 1.00895 * 111.00207 * 37.49870 * 13 11 10 42 42 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 43 43 H 1.09000 * 109.47732 * 300.00127 * 14 13 11 44 44 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 45 45 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.72660 * 153.86573 * 26 11 10 47 47 H 1.09004 * 110.71821 * 277.14111 * 26 11 10 48 48 H 1.09001 * 109.47363 * 58.54698 * 29 27 9 49 49 H 1.09008 * 109.46883 * 178.54153 * 29 27 9 50 50 H 1.08994 * 109.47391 * 298.54015 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5297 -2.3506 0.0011 7 6 6.0114 -2.0753 0.0022 8 8 6.4157 -0.9318 0.0035 9 7 6.8872 -3.0997 0.0029 10 6 6.5349 -4.5312 0.0021 11 6 7.7669 -5.2431 0.6145 12 1 7.7502 -5.1859 1.7029 13 7 7.8459 -6.6392 0.1646 14 6 7.0464 -7.5171 1.0295 15 6 7.1512 -8.9377 0.5377 16 8 7.8260 -9.1938 -0.4372 17 7 6.5001 -9.9246 1.1846 18 6 6.6000 -11.2179 0.7406 19 1 7.2008 -11.4458 -0.1275 20 6 5.9283 -12.2352 1.4072 21 7 5.1969 -11.9578 2.4632 22 14 6.0639 -13.9972 0.8017 23 1 6.9404 -14.0429 -0.3961 24 1 6.6456 -14.8453 1.8730 25 1 4.7138 -14.5041 0.4473 26 6 8.9339 -4.4037 0.0306 27 6 8.3520 -2.9746 0.0035 28 1 8.6803 -2.4577 -0.8983 29 6 8.8076 -2.2003 1.2419 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9972 -1.8770 -0.8892 34 1 1.9971 -1.8764 0.8909 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4542 -0.8889 37 1 4.2666 -2.9220 -0.8890 38 1 4.2661 -2.9223 0.8908 39 1 6.3633 -4.8791 -1.0165 40 1 5.6514 -4.7066 0.6159 41 1 7.5614 -6.7251 -0.7996 42 1 6.0037 -7.2003 1.0044 43 1 7.4196 -7.4578 2.0519 44 1 5.9607 -9.7200 1.9644 45 1 4.7276 -12.6679 2.9284 46 1 9.8072 -4.4524 0.6810 47 1 9.1829 -4.7378 -0.9767 48 1 8.4695 -2.7186 2.1392 49 1 9.8957 -2.1339 1.2490 50 1 8.3826 -1.1969 1.2198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278346441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:14 Heat of formation + Delta-G solvation = -145.439077 kcal Electronic energy + Delta-G solvation = -28955.487538 eV Core-core repulsion = 24788.104136 eV Total energy + Delta-G solvation = -4167.383403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42454 -40.46331 -40.09320 -38.94573 -36.22343 -35.58008 -35.29298 -33.23010 -33.03720 -31.50350 -30.98601 -28.76749 -27.84373 -26.77352 -25.72280 -24.22484 -22.65936 -21.49987 -21.02021 -20.55372 -19.91558 -19.87812 -18.22474 -17.67484 -17.37144 -17.18901 -16.73365 -16.62952 -16.35180 -16.05632 -15.98942 -15.75468 -15.57041 -15.16237 -14.80556 -14.63072 -14.37753 -14.19238 -14.04721 -13.69517 -13.51289 -13.42576 -13.31894 -13.17717 -13.02482 -13.00194 -12.82730 -12.75426 -12.69804 -12.47047 -12.37043 -12.23324 -12.10271 -11.94737 -11.75814 -11.58899 -11.47813 -10.92461 -10.52994 -10.30086 -9.97157 -9.74408 -9.29339 -8.43738 -5.91535 1.05926 1.38920 1.44980 1.58156 1.60868 1.90270 2.10486 2.31770 2.89435 3.17627 3.24407 3.40228 3.50549 3.72078 3.78227 3.98312 4.04720 4.06127 4.11520 4.13748 4.28103 4.37706 4.39089 4.45354 4.48596 4.54542 4.61078 4.64098 4.70196 4.71214 4.74502 4.77385 4.80905 4.86755 4.96672 5.06991 5.11485 5.13617 5.24905 5.28605 5.33429 5.44425 5.45314 5.92364 6.13054 6.39087 6.50930 6.63366 6.64271 7.14667 7.17125 7.61538 8.16926 8.73644 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.002070 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.139200 B =13524.971816 C =15808.448638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.349 3.651 3 O -0.516 6.516 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.129 4.129 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.611 5.611 10 C 0.069 3.931 11 C 0.083 3.917 12 H 0.104 0.896 13 N -0.665 5.665 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.989 3.011 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.110 4.110 27 C 0.131 3.869 28 H 0.064 0.936 29 C -0.155 4.155 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.349 0.651 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 18.514 -0.914 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.229 3.771 3 O -0.394 6.394 4 C -0.206 4.206 5 C -0.132 4.132 6 C -0.169 4.169 7 C 0.309 3.691 8 O -0.465 6.465 9 N -0.345 5.345 10 C -0.056 4.056 11 C -0.028 4.028 12 H 0.122 0.878 13 N -0.297 5.297 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.148 4.148 27 C 0.028 3.972 28 H 0.082 0.918 29 C -0.213 4.213 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.170 0.830 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.231 0.769 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.747 19.275 -1.111 20.452 hybrid contribution -0.858 -0.437 -0.175 0.979 sum -7.606 18.839 -1.286 20.357 Atomic orbital electron populations 1.22328 0.91822 1.05798 1.05863 1.25362 0.93619 0.90159 0.67966 1.90444 1.73302 1.37235 1.38370 1.22250 0.93557 0.97208 1.07545 1.21046 0.94429 0.95749 1.01929 1.21726 0.88501 0.99837 1.06788 1.21084 0.89754 0.83360 0.74900 1.90693 1.81072 1.22691 1.52006 1.48606 1.06574 1.06629 1.72669 1.23319 1.00354 0.79650 1.02266 1.22787 0.93447 0.86038 1.00502 0.87785 1.60084 1.58308 1.04487 1.06812 1.21604 0.97993 0.88665 0.98500 1.20945 0.82764 0.88320 0.85443 1.90509 1.45150 1.84816 1.30615 1.41931 1.44310 1.06376 1.28480 1.19670 1.29284 0.84179 1.12882 0.90410 1.25973 0.95670 1.03681 0.95906 1.69662 1.31371 1.35350 1.19647 0.84922 0.78257 0.77348 0.78140 1.19898 1.19903 1.19613 1.22662 0.98307 0.90882 1.02947 1.21611 0.79863 0.97056 0.98677 0.91781 1.22066 1.02097 0.99935 0.97231 0.87216 0.90572 0.86822 0.85341 0.85226 0.93525 0.93689 0.86437 0.86135 0.90428 0.88188 0.83040 0.90446 0.87666 0.76871 0.91374 0.88709 0.90265 0.92088 0.90252 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 10.25 71.24 0.73 -0.54 16 2 C 0.35 4.88 7.27 29.10 0.21 5.10 16 3 O -0.52 -13.07 16.72 -1.44 -0.02 -13.09 16 4 C -0.17 -1.48 5.62 29.85 0.17 -1.31 16 5 C -0.09 -1.60 3.79 30.60 0.12 -1.49 16 6 C -0.13 -1.74 4.71 29.85 0.14 -1.60 16 7 C 0.52 11.47 7.63 87.66 0.67 12.14 16 8 O -0.58 -18.26 14.87 -3.06 -0.05 -18.31 16 9 N -0.61 -11.64 3.08 -788.07 -2.43 -14.07 16 10 C 0.07 1.04 6.27 86.86 0.54 1.58 16 11 C 0.08 1.50 3.32 46.31 0.15 1.66 16 12 H 0.10 1.75 7.92 -2.39 -0.02 1.73 16 13 N -0.67 -16.95 6.00 -488.40 -2.93 -19.88 16 14 C 0.06 1.82 6.04 85.56 0.52 2.33 16 15 C 0.44 18.94 7.82 87.66 0.69 19.62 16 16 O -0.62 -32.37 15.78 -3.07 -0.05 -32.42 16 17 N -0.57 -27.39 5.29 -306.98 -1.62 -29.01 16 18 C -0.33 -17.93 9.68 84.04 0.81 -17.12 16 19 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 20 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 21 N -0.92 -47.47 13.05 21.66 0.28 -47.19 16 22 Si 0.99 41.43 29.55 68.60 2.03 43.45 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 C -0.11 -1.95 6.19 31.78 0.20 -1.75 16 27 C 0.13 2.56 3.49 45.34 0.16 2.72 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 C -0.16 -3.03 9.07 71.98 0.65 -2.37 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.10 8.12 -2.39 -0.02 0.08 16 33 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.05 1.05 8.06 -2.39 -0.02 1.03 16 36 H 0.04 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 1.02 7.85 -2.39 -0.02 1.00 16 39 H 0.08 1.15 7.80 -2.39 -0.02 1.13 16 40 H 0.10 1.10 7.48 -2.39 -0.02 1.08 16 41 H 0.35 9.37 8.00 -89.70 -0.72 8.66 16 42 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.11 2.67 8.09 -2.39 -0.02 2.66 16 44 H 0.40 17.82 7.90 -92.71 -0.73 17.09 16 45 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 46 H 0.09 1.58 7.83 -2.39 -0.02 1.56 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 50 H 0.04 1.11 6.73 -2.39 -0.02 1.09 16 Total: -1.00 -78.98 413.04 0.93 -78.04 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.50 Total: 33.66 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.22 Total: 18.80 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -6.70 Total: -110.14 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -0.12 Total: -63.81 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -78.98 0.93 -78.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278346441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.396 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds