Wall clock time and date at job start Tue Mar 31 2020 23:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.49377 * 2 1 4 4 C 1.53044 * 109.49672 * 239.94206 * 2 1 3 5 5 C 1.53043 * 109.53758 * 178.64836 * 4 2 1 6 6 C 1.53193 * 109.31156 * 61.36110 * 5 4 2 7 7 N 1.46928 * 108.77648 * 305.36417 * 6 5 4 8 8 C 1.34770 * 120.63011 * 233.58240 * 7 6 5 9 9 O 1.21352 * 120.00191 * 185.05154 * 8 7 6 10 10 C 1.49450 * 120.00136 * 5.06191 * 8 7 6 11 11 O 1.21342 * 120.00693 * 85.33045 * 10 8 7 12 12 N 1.34778 * 119.99700 * 265.33461 * 10 8 7 13 13 C 1.47227 * 121.03044 * 354.98217 * 12 10 8 14 14 C 1.53302 * 108.40752 * 129.46707 * 13 12 10 15 15 O 1.42956 * 109.22179 * 52.30231 * 14 13 12 16 16 C 1.42962 * 114.16779 * 297.42282 * 15 14 13 17 17 H 1.08997 * 109.51781 * 302.65831 * 16 15 14 18 18 C 1.53006 * 109.55400 * 182.52963 * 16 15 14 19 19 N 1.46498 * 109.46898 * 65.22918 * 18 16 15 20 20 C 1.36938 * 120.00017 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99598 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00246 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99752 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46602 * 60.00261 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47281 * 300.00457 * 24 22 20 28 28 C 1.47145 * 120.98573 * 174.96128 * 12 10 8 29 29 C 1.46925 * 118.73654 * 53.86183 * 7 6 5 30 30 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46982 * 300.05905 * 1 2 3 32 32 H 1.08997 * 109.46871 * 60.06242 * 1 2 3 33 33 H 1.08995 * 109.46275 * 58.62783 * 4 2 1 34 34 H 1.09000 * 109.45634 * 298.66788 * 4 2 1 35 35 H 1.09002 * 109.49540 * 301.40894 * 5 4 2 36 36 H 1.08999 * 109.49847 * 181.31421 * 5 4 2 37 37 H 1.08998 * 109.58328 * 185.57776 * 6 5 4 38 38 H 1.09003 * 109.70346 * 65.22367 * 6 5 4 39 39 H 1.09003 * 109.66838 * 9.73498 * 13 12 10 40 40 H 1.09006 * 109.67955 * 249.19277 * 13 12 10 41 41 H 1.09006 * 109.50624 * 292.38155 * 14 13 12 42 42 H 1.08996 * 109.55519 * 172.26118 * 14 13 12 43 43 H 1.08995 * 109.47088 * 185.23277 * 18 16 15 44 44 H 1.08999 * 109.46774 * 305.23113 * 18 16 15 45 45 H 0.96994 * 120.00394 * 359.97438 * 19 18 16 46 46 H 0.97005 * 119.99587 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.68425 * 110.79775 * 28 12 10 48 48 H 1.08998 * 109.68399 * 350.28242 * 28 12 10 49 49 H 1.09007 * 109.58787 * 65.92621 * 29 7 6 50 50 H 1.09004 * 109.58629 * 186.34656 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 3.5709 -0.6938 -1.2668 6 6 4.1060 -1.4254 -0.0318 7 7 3.5054 -0.8282 1.1688 8 6 4.2820 -0.3854 2.1774 9 8 3.7733 0.0212 3.2014 10 6 5.7696 -0.3948 2.0346 11 8 6.3337 0.5360 1.4981 12 7 6.4848 -1.4373 2.5018 13 6 5.8377 -2.5259 3.2527 14 6 6.2609 -3.8614 2.6303 15 8 7.6870 -3.9099 2.5448 16 6 8.2573 -2.9063 1.7014 17 1 7.8368 -2.9907 0.6993 18 6 9.7745 -3.0935 1.6364 19 7 10.0817 -4.3655 0.9778 20 6 11.3846 -4.7501 0.8055 21 1 12.1856 -4.1159 1.1555 22 6 11.6758 -5.9556 0.1819 23 7 10.6995 -6.7287 -0.2442 24 14 13.4532 -6.4800 -0.0538 25 1 14.1159 -6.5917 1.2704 26 1 13.4941 -7.7963 -0.7399 27 1 14.1623 -5.4690 -0.8785 28 6 7.9364 -1.5219 2.2763 29 6 2.0419 -0.7288 1.2517 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.6577 -0.2241 -2.1390 34 1 1.6972 -1.7570 -1.2356 35 1 3.9154 0.3403 -1.2548 36 1 3.9334 -1.1881 -2.1680 37 1 5.1903 -1.3227 0.0124 38 1 3.8409 -2.4812 -0.0865 39 1 4.7545 -2.4197 3.1926 40 1 6.1532 -2.4907 4.2955 41 1 5.8330 -3.9494 1.6315 42 1 5.9052 -4.6828 3.2523 43 1 10.2176 -2.2746 1.0698 44 1 10.1834 -3.0993 2.6467 45 1 9.3623 -4.9356 0.6644 46 1 10.9030 -7.5710 -0.6802 47 1 8.4632 -1.3855 3.2208 48 1 8.2437 -0.7508 1.5699 49 1 1.6097 -1.7284 1.2982 50 1 1.7637 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280647890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:59 Heat of formation + Delta-G solvation = -96.418294 kcal Electronic energy + Delta-G solvation = -30980.238491 eV Core-core repulsion = 26814.980789 eV Total energy + Delta-G solvation = -4165.257702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36139 -39.77201 -38.48833 -37.80666 -35.20052 -34.51052 -34.30262 -32.30506 -32.29640 -30.28850 -28.67682 -27.59372 -26.64637 -25.64836 -23.68891 -23.52161 -22.77911 -21.96774 -20.90384 -20.37859 -19.11774 -18.15607 -17.33002 -17.10157 -16.88661 -16.32973 -15.69289 -15.37704 -15.34712 -15.13461 -14.99081 -14.77200 -14.57260 -14.42741 -14.03905 -13.88615 -13.45348 -13.33941 -13.17425 -13.08001 -12.81987 -12.56138 -12.49527 -12.29334 -12.24842 -11.73029 -11.68180 -11.53962 -11.32360 -11.14284 -11.09048 -10.93003 -10.84731 -10.79611 -10.54372 -10.14925 -10.02750 -9.78903 -9.66899 -9.18633 -8.88695 -8.76196 -6.92396 -5.75298 -3.04183 1.79297 1.83240 2.28626 2.91989 3.45403 3.49520 3.50578 3.78373 3.83553 4.21548 4.33367 4.36656 4.51359 4.52456 4.63617 4.74336 4.76754 4.89833 4.95783 4.99873 5.01784 5.11650 5.20025 5.22139 5.28787 5.32167 5.33474 5.34393 5.53287 5.54624 5.57527 5.60723 5.64925 5.67962 5.72438 5.75650 5.84762 5.91434 5.99129 6.05990 6.22078 6.50296 6.64090 6.71519 6.85882 7.35762 7.44485 7.54365 7.69717 8.42792 9.54615 10.10608 10.46406 11.47396 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002517 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.807209 B =11122.251885 C =11772.664661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.103 3.897 7 N -0.595 5.595 8 C 0.520 3.480 9 O -0.515 6.515 10 C 0.518 3.482 11 O -0.510 6.510 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.048 3.952 15 O -0.354 6.354 16 C 0.075 3.925 17 H 0.065 0.935 18 C 0.163 3.837 19 N -0.726 5.726 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.083 3.917 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.076 0.924 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.379 11.360 1.114 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.174 4.174 6 C -0.020 4.020 7 N -0.330 5.330 8 C 0.302 3.698 9 O -0.390 6.390 10 C 0.300 3.700 11 O -0.385 6.385 12 N -0.332 5.332 13 C -0.052 4.052 14 C -0.030 4.030 15 O -0.272 6.272 16 C 0.016 3.984 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.371 5.371 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.039 4.039 29 C -0.007 4.007 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.123 0.877 49 H 0.094 0.906 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.046 11.948 1.482 25.119 hybrid contribution 0.532 -0.337 -0.343 0.717 sum -21.513 11.611 1.139 24.473 Atomic orbital electron populations 1.21761 0.94034 1.02226 1.02249 1.21612 0.96193 1.00278 0.94689 0.90540 1.21611 0.95013 1.01029 0.97628 1.21919 0.96155 1.01840 0.97499 1.21893 0.98511 0.97590 0.83958 1.48139 1.07145 1.59470 1.18238 1.20280 0.87706 0.78028 0.83766 1.90801 1.73987 1.46276 1.27902 1.20169 0.87791 0.83011 0.79031 1.90818 1.70572 1.34029 1.43055 1.48226 1.09411 1.21282 1.54302 1.22628 0.98036 0.87414 0.97132 1.22913 0.83560 0.95783 1.00710 1.88187 1.17878 1.53091 1.68071 1.22824 0.96985 0.85473 0.93138 0.91672 1.20620 0.87867 0.91021 0.97000 1.42206 1.05747 1.19081 1.70024 1.19174 0.84110 1.02127 1.31721 0.91158 1.24740 0.97395 0.97307 1.01463 1.69663 1.30147 1.13116 1.45159 0.86250 0.84507 0.77578 0.77734 1.21246 1.21712 1.21258 1.22518 0.78328 0.99666 1.03386 1.21904 0.77929 1.01422 0.99465 0.92298 0.92297 0.92125 0.91255 0.91408 0.91009 0.89915 0.89847 0.90085 0.89558 0.89421 0.92729 0.87396 0.94511 0.95116 0.77917 0.93496 0.89698 0.87705 0.90615 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 37.16 0.34 -0.37 16 2 C -0.11 -0.70 2.88 -90.27 -0.26 -0.96 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.68 5.17 -26.69 -0.14 -0.82 16 5 C -0.14 -0.98 6.08 -26.61 -0.16 -1.14 16 6 C 0.10 0.87 6.35 -3.71 -0.02 0.85 16 7 N -0.60 -5.86 2.97 -173.01 -0.51 -6.37 16 8 C 0.52 6.75 5.53 -11.59 -0.06 6.69 16 9 O -0.52 -7.88 16.53 5.50 0.09 -7.79 16 10 C 0.52 7.34 5.48 -11.58 -0.06 7.28 16 11 O -0.51 -8.61 16.59 5.50 0.09 -8.52 16 12 N -0.60 -7.72 3.02 -172.72 -0.52 -8.24 16 13 C 0.07 0.77 6.57 -3.49 -0.02 0.74 16 14 C 0.05 0.56 6.99 37.31 0.26 0.82 16 15 O -0.35 -5.81 10.34 -35.23 -0.36 -6.18 16 16 C 0.07 1.19 2.81 -26.57 -0.07 1.12 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.16 3.21 5.93 -4.04 -0.02 3.19 16 19 N -0.73 -18.37 5.55 -59.91 -0.33 -18.70 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.08 1.14 5.91 -3.54 -0.02 1.12 16 29 C 0.11 0.89 5.73 -3.49 -0.02 0.87 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.85 6.31 -51.93 -0.33 0.52 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.83 6.40 -51.93 -0.33 0.50 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.39 10.37 7.67 -40.82 -0.31 10.05 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 48 H 0.10 1.46 7.12 -51.93 -0.37 1.09 16 49 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 50 H 0.09 0.85 7.03 -51.93 -0.37 0.49 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -34.41 398.14 -8.81 -43.22 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.44 Total: 4.58 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.52 Total: 12.06 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.64 Total: -60.71 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.18 Total: -22.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.41 -8.81 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280647890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.202 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds