Wall clock time and date at job start Tue Mar 31 2020 23:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.49377 * 2 1 4 4 C 1.53044 * 109.49672 * 239.94206 * 2 1 3 5 5 C 1.53043 * 109.53758 * 178.64836 * 4 2 1 6 6 C 1.53193 * 109.31156 * 61.36110 * 5 4 2 7 7 N 1.46928 * 108.77648 * 305.36417 * 6 5 4 8 8 C 1.34770 * 120.63011 * 233.58240 * 7 6 5 9 9 O 1.21352 * 120.00191 * 185.05154 * 8 7 6 10 10 C 1.49450 * 120.00136 * 5.06191 * 8 7 6 11 11 O 1.21342 * 120.00693 * 85.33045 * 10 8 7 12 12 N 1.34778 * 119.99700 * 265.33461 * 10 8 7 13 13 C 1.47227 * 121.03044 * 354.98217 * 12 10 8 14 14 C 1.53302 * 108.40752 * 129.46707 * 13 12 10 15 15 O 1.42956 * 109.22179 * 52.30231 * 14 13 12 16 16 C 1.42962 * 114.16779 * 297.42282 * 15 14 13 17 17 H 1.08997 * 109.51781 * 302.65831 * 16 15 14 18 18 C 1.53006 * 109.55400 * 182.52963 * 16 15 14 19 19 N 1.46498 * 109.46898 * 65.22918 * 18 16 15 20 20 C 1.36938 * 120.00017 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99598 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00246 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99752 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46602 * 60.00261 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47281 * 300.00457 * 24 22 20 28 28 C 1.47145 * 120.98573 * 174.96128 * 12 10 8 29 29 C 1.46925 * 118.73654 * 53.86183 * 7 6 5 30 30 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46982 * 300.05905 * 1 2 3 32 32 H 1.08997 * 109.46871 * 60.06242 * 1 2 3 33 33 H 1.08995 * 109.46275 * 58.62783 * 4 2 1 34 34 H 1.09000 * 109.45634 * 298.66788 * 4 2 1 35 35 H 1.09002 * 109.49540 * 301.40894 * 5 4 2 36 36 H 1.08999 * 109.49847 * 181.31421 * 5 4 2 37 37 H 1.08998 * 109.58328 * 185.57776 * 6 5 4 38 38 H 1.09003 * 109.70346 * 65.22367 * 6 5 4 39 39 H 1.09003 * 109.66838 * 9.73498 * 13 12 10 40 40 H 1.09006 * 109.67955 * 249.19277 * 13 12 10 41 41 H 1.09006 * 109.50624 * 292.38155 * 14 13 12 42 42 H 1.08996 * 109.55519 * 172.26118 * 14 13 12 43 43 H 1.08995 * 109.47088 * 185.23277 * 18 16 15 44 44 H 1.08999 * 109.46774 * 305.23113 * 18 16 15 45 45 H 0.96994 * 120.00394 * 359.97438 * 19 18 16 46 46 H 0.97005 * 119.99587 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.68425 * 110.79775 * 28 12 10 48 48 H 1.08998 * 109.68399 * 350.28242 * 28 12 10 49 49 H 1.09007 * 109.58787 * 65.92621 * 29 7 6 50 50 H 1.09004 * 109.58629 * 186.34656 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 3.5709 -0.6938 -1.2668 6 6 4.1060 -1.4254 -0.0318 7 7 3.5054 -0.8282 1.1688 8 6 4.2820 -0.3854 2.1774 9 8 3.7733 0.0212 3.2014 10 6 5.7696 -0.3948 2.0346 11 8 6.3337 0.5360 1.4981 12 7 6.4848 -1.4373 2.5018 13 6 5.8377 -2.5259 3.2527 14 6 6.2609 -3.8614 2.6303 15 8 7.6870 -3.9099 2.5448 16 6 8.2573 -2.9063 1.7014 17 1 7.8368 -2.9907 0.6993 18 6 9.7745 -3.0935 1.6364 19 7 10.0817 -4.3655 0.9778 20 6 11.3846 -4.7501 0.8055 21 1 12.1856 -4.1159 1.1555 22 6 11.6758 -5.9556 0.1819 23 7 10.6995 -6.7287 -0.2442 24 14 13.4532 -6.4800 -0.0538 25 1 14.1159 -6.5917 1.2704 26 1 13.4941 -7.7963 -0.7399 27 1 14.1623 -5.4690 -0.8785 28 6 7.9364 -1.5219 2.2763 29 6 2.0419 -0.7288 1.2517 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.6577 -0.2241 -2.1390 34 1 1.6972 -1.7570 -1.2356 35 1 3.9154 0.3403 -1.2548 36 1 3.9334 -1.1881 -2.1680 37 1 5.1903 -1.3227 0.0124 38 1 3.8409 -2.4812 -0.0865 39 1 4.7545 -2.4197 3.1926 40 1 6.1532 -2.4907 4.2955 41 1 5.8330 -3.9494 1.6315 42 1 5.9052 -4.6828 3.2523 43 1 10.2176 -2.2746 1.0698 44 1 10.1834 -3.0993 2.6467 45 1 9.3623 -4.9356 0.6644 46 1 10.9030 -7.5710 -0.6802 47 1 8.4632 -1.3855 3.2208 48 1 8.2437 -0.7508 1.5699 49 1 1.6097 -1.7284 1.2982 50 1 1.7637 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280647890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:58 Heat of formation + Delta-G solvation = -120.529714 kcal Electronic energy + Delta-G solvation = -30981.284041 eV Core-core repulsion = 26814.980789 eV Total energy + Delta-G solvation = -4166.303252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37196 -40.76556 -39.55029 -38.74464 -36.72348 -35.93918 -34.99254 -33.94656 -32.92988 -31.96216 -29.75165 -28.54822 -27.55379 -26.80456 -25.12012 -24.65491 -23.47707 -23.28342 -22.12550 -21.07047 -20.02737 -19.24883 -19.06158 -18.31563 -17.96341 -17.46646 -16.85786 -16.49983 -16.34331 -16.13330 -16.04822 -15.83861 -15.62379 -15.43707 -15.10336 -15.03344 -14.62496 -14.48440 -14.37116 -14.16065 -14.02843 -13.60874 -13.49166 -13.08093 -13.03217 -12.92541 -12.76245 -12.67795 -12.66323 -12.30832 -12.11445 -12.08720 -11.90083 -11.87198 -11.70530 -11.64872 -11.37191 -11.28385 -10.93521 -10.81710 -9.96651 -9.88350 -8.98557 -7.92136 -5.21074 0.77345 0.80342 1.23886 1.49866 1.52987 1.58831 2.00014 2.58178 2.69591 2.84686 3.41873 3.45404 3.61596 3.74811 3.77478 3.81837 3.85566 3.91934 3.93412 4.05741 4.18300 4.22913 4.30206 4.37080 4.41977 4.43524 4.58399 4.61955 4.68552 4.69206 4.72294 4.77137 4.79371 4.88413 4.93764 4.97239 5.03518 5.08724 5.11890 5.19597 5.24467 5.33802 5.47178 5.51085 5.79323 5.85299 6.18840 6.29282 6.43667 6.50748 7.36224 8.09664 8.34373 9.31179 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002517 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.807209 B =11122.251885 C =11772.664661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.134 4.134 6 C 0.098 3.902 7 N -0.584 5.584 8 C 0.520 3.480 9 O -0.544 6.544 10 C 0.517 3.483 11 O -0.545 6.545 12 N -0.593 5.593 13 C 0.075 3.925 14 C 0.046 3.954 15 O -0.383 6.383 16 C 0.090 3.910 17 H 0.060 0.940 18 C 0.160 3.840 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.974 3.026 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.092 3.908 29 C 0.110 3.890 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.047 0.953 44 H 0.030 0.970 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 11.005 0.958 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.023 4.023 7 N -0.317 5.317 8 C 0.302 3.698 9 O -0.422 6.422 10 C 0.301 3.699 11 O -0.421 6.421 12 N -0.327 5.327 13 C -0.047 4.047 14 C -0.031 4.031 15 O -0.302 6.302 16 C 0.031 3.969 17 H 0.078 0.922 18 C 0.033 3.967 19 N -0.382 5.382 20 C -0.378 4.378 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.203 1.203 28 C -0.031 4.031 29 C -0.010 4.010 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.111 0.889 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.258 11.608 1.329 26.028 hybrid contribution 0.840 -0.197 -0.282 0.908 sum -22.418 11.411 1.047 25.177 Atomic orbital electron populations 1.21728 0.92484 1.03092 1.02499 1.21578 0.97377 0.99107 0.94356 0.92422 1.21606 0.93675 1.01955 0.97553 1.21916 0.97349 1.00653 0.97303 1.22071 0.97482 0.98990 0.83797 1.48255 1.07951 1.57875 1.17619 1.20062 0.87156 0.78387 0.84217 1.90787 1.74141 1.48100 1.29170 1.20455 0.88467 0.82672 0.78349 1.90793 1.71335 1.35366 1.44651 1.48268 1.09044 1.21531 1.53869 1.22732 0.98766 0.86133 0.97090 1.23165 0.81116 0.96944 1.01859 1.88132 1.20666 1.53357 1.68001 1.22482 0.94550 0.86621 0.93251 0.92159 1.20759 0.90833 0.88893 0.96257 1.42378 1.04661 1.20692 1.70462 1.19602 0.85466 1.02129 1.30648 0.90500 1.25568 1.01408 0.97690 1.02035 1.69818 1.32089 1.13405 1.46508 0.85203 0.79836 0.76885 0.77764 1.20516 1.22136 1.20303 1.22327 0.79147 0.98044 1.03549 1.22137 0.76427 1.02820 0.99644 0.91079 0.92482 0.91521 0.90319 0.89849 0.92884 0.88668 0.91747 0.87678 0.88013 0.88638 0.91889 0.85128 0.93521 0.95209 0.79182 0.94003 0.88908 0.88036 0.88142 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 71.98 0.66 -0.40 16 2 C -0.10 -1.19 2.88 -10.57 -0.03 -1.22 16 3 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.11 -1.04 5.17 30.62 0.16 -0.88 16 5 C -0.13 -1.75 6.08 30.67 0.19 -1.57 16 6 C 0.10 1.53 6.35 86.36 0.55 2.08 16 7 N -0.58 -10.84 2.97 -819.64 -2.43 -13.27 16 8 C 0.52 13.29 5.53 87.27 0.48 13.77 16 9 O -0.54 -16.57 16.53 -3.25 -0.05 -16.63 16 10 C 0.52 14.63 5.48 87.27 0.48 15.11 16 11 O -0.54 -18.71 16.59 -3.22 -0.05 -18.77 16 12 N -0.59 -14.89 3.02 -818.72 -2.47 -17.36 16 13 C 0.07 1.49 6.57 86.34 0.57 2.06 16 14 C 0.05 0.99 6.99 72.08 0.50 1.50 16 15 O -0.38 -12.23 10.34 -148.98 -1.54 -13.77 16 16 C 0.09 2.84 2.81 30.70 0.09 2.93 16 17 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.16 6.26 5.93 86.38 0.51 6.77 16 19 N -0.74 -37.59 5.55 -343.45 -1.91 -39.50 16 20 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 21 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 23 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 24 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.09 2.48 5.91 86.36 0.51 2.99 16 29 C 0.11 1.54 5.73 86.51 0.50 2.03 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.28 6.31 -2.39 -0.02 1.26 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.76 6.40 -2.39 -0.02 1.74 16 40 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 42 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.38 20.45 7.67 -92.71 -0.71 19.74 16 46 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 47 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 48 H 0.10 2.83 7.12 -2.39 -0.02 2.81 16 49 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.08 1.40 7.03 -2.38 -0.02 1.39 16 Total: -1.00 -74.54 398.14 0.54 -74.00 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.22 Total: 27.60 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 6.47 Total: 28.42 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.53 Total: -128.83 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -1.65 Total: -49.17 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -74.54 0.54 -74.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280647890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.525 kcal (2) G-P(sol) polarization free energy of solvation -74.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds