Wall clock time and date at job start Tue Mar 31 2020 23:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49696 * 2 1 4 4 C 1.53039 * 109.52672 * 120.08227 * 2 1 3 5 5 C 1.53037 * 109.54126 * 181.33561 * 4 2 1 6 6 C 1.53628 * 109.23713 * 298.50862 * 5 4 2 7 7 N 1.46927 * 108.54616 * 54.86012 * 6 5 4 8 8 C 1.34771 * 120.63556 * 126.36839 * 7 6 5 9 9 O 1.21348 * 120.00501 * 184.77849 * 8 7 6 10 10 C 1.49458 * 119.99917 * 4.77550 * 8 7 6 11 11 O 1.21351 * 119.99899 * 274.71908 * 10 8 7 12 12 N 1.34772 * 120.00011 * 94.71535 * 10 8 7 13 13 C 1.47147 * 120.98072 * 174.92088 * 12 10 8 14 14 C 1.53304 * 108.38042 * 129.49147 * 13 12 10 15 15 O 1.42961 * 109.22460 * 52.30539 * 14 13 12 16 16 C 1.42973 * 114.19754 * 297.43452 * 15 14 13 17 17 H 1.09003 * 109.48542 * 302.62328 * 16 15 14 18 18 C 1.53002 * 109.54856 * 182.46567 * 16 15 14 19 19 N 1.46494 * 109.46989 * 65.24159 * 18 16 15 20 20 C 1.36937 * 119.99826 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99967 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00222 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47241 * 59.99972 * 24 22 20 26 26 H 1.48497 * 109.47762 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47006 * 300.00226 * 24 22 20 28 28 C 1.47148 * 120.98219 * 354.95288 * 12 10 8 29 29 C 1.46926 * 118.73349 * 306.09433 * 7 6 5 30 30 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47075 * 300.06654 * 1 2 3 32 32 H 1.09004 * 109.46806 * 60.06559 * 1 2 3 33 33 H 1.09004 * 109.45511 * 301.35235 * 4 2 1 34 34 H 1.08997 * 109.46092 * 61.30627 * 4 2 1 35 35 H 1.09004 * 109.50142 * 58.57859 * 5 4 2 36 36 H 1.08999 * 109.49700 * 178.65345 * 5 4 2 37 37 H 1.08997 * 109.74352 * 295.11759 * 6 5 4 38 38 H 1.08999 * 109.66287 * 174.54970 * 6 5 4 39 39 H 1.09002 * 109.68743 * 249.21347 * 13 12 10 40 40 H 1.09000 * 109.68559 * 9.73083 * 13 12 10 41 41 H 1.08999 * 109.50692 * 172.22609 * 14 13 12 42 42 H 1.08997 * 109.51205 * 292.37397 * 14 13 12 43 43 H 1.09001 * 109.46979 * 185.24362 * 18 16 15 44 44 H 1.09006 * 109.46597 * 305.23893 * 18 16 15 45 45 H 0.96993 * 120.00200 * 359.97438 * 19 18 16 46 46 H 0.96996 * 120.00362 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.68075 * 350.22811 * 28 12 10 48 48 H 1.08996 * 109.68572 * 110.74694 * 28 12 10 49 49 H 1.09002 * 109.58830 * 173.65005 * 29 7 6 50 50 H 1.09009 * 109.58881 * 294.06692 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6941 1.2654 6 6 4.1057 -1.4306 0.0275 7 7 3.5047 -0.8281 -1.1703 8 6 4.2807 -0.3850 -2.1791 9 8 3.7791 0.1887 -3.1236 10 6 5.7590 -0.6000 -2.1348 11 8 6.4695 0.1889 -1.5470 12 7 6.3030 -1.6701 -2.7474 13 6 7.7626 -1.8446 -2.8127 14 6 8.1022 -3.2600 -2.3314 15 8 7.3165 -4.2062 -3.0602 16 6 5.9066 -4.0721 -2.8638 17 1 5.6773 -4.1613 -1.8019 18 6 5.1750 -5.1694 -3.6395 19 7 5.5164 -6.4772 -3.0747 20 6 4.9773 -7.6162 -3.6105 21 1 4.3007 -7.5504 -4.4497 22 6 5.3011 -8.8555 -3.0757 23 7 6.1269 -8.9359 -2.0539 24 14 4.5662 -10.4094 -3.8069 25 1 4.9619 -10.5201 -5.2340 26 1 5.0662 -11.5921 -3.0611 27 1 3.0857 -10.3513 -3.7069 28 6 5.4549 -2.6979 -3.3715 29 6 2.0413 -0.7234 -1.2498 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.6589 -0.2246 2.1388 34 1 1.6978 -1.7573 1.2351 35 1 3.9161 0.3399 1.2534 36 1 3.9345 -1.1883 2.1666 37 1 3.8350 -2.4851 0.0811 38 1 5.1902 -1.3315 -0.0187 39 1 8.1024 -1.7149 -3.8402 40 1 8.2493 -1.1111 -2.1699 41 1 9.1605 -3.4581 -2.5011 42 1 7.8811 -3.3456 -1.2675 43 1 4.0991 -5.0111 -3.5653 44 1 5.4758 -5.1360 -4.6868 45 1 6.1250 -6.5364 -2.3217 46 1 6.3529 -9.8019 -1.6799 47 1 4.4131 -2.5299 -3.0981 48 1 5.5617 -2.6537 -4.4553 49 1 1.7632 -0.1576 -2.1390 50 1 1.6056 -1.7214 -1.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280647892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:06 Heat of formation + Delta-G solvation = -96.800233 kcal Electronic energy + Delta-G solvation = -31282.284065 eV Core-core repulsion = 27117.009801 eV Total energy + Delta-G solvation = -4165.274264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31885 -39.74057 -38.47765 -37.75475 -35.08210 -34.64445 -34.22027 -32.29579 -32.21307 -30.37183 -28.72410 -27.43162 -26.35586 -25.70336 -24.25416 -23.10081 -22.70688 -21.86935 -20.96873 -20.35033 -19.04077 -18.08768 -17.41624 -17.03974 -16.85654 -16.33991 -15.66005 -15.35551 -15.24651 -15.13695 -14.96050 -14.71601 -14.58007 -14.24684 -14.05558 -13.86279 -13.44962 -13.27312 -13.17647 -12.98127 -12.83409 -12.55116 -12.41663 -12.34152 -12.19651 -11.72031 -11.66343 -11.46339 -11.22283 -11.11110 -11.07522 -10.95461 -10.81676 -10.75975 -10.51650 -10.13941 -10.03949 -9.78123 -9.71370 -9.07705 -8.91402 -8.77130 -6.95393 -5.77535 -3.06869 1.82314 1.88044 2.32524 2.96470 3.43343 3.47875 3.48787 3.82714 3.84206 4.30081 4.42657 4.44938 4.49307 4.59611 4.66768 4.78612 4.86426 4.97397 5.00677 5.05081 5.10818 5.14862 5.21891 5.28531 5.31869 5.38407 5.41503 5.46205 5.48438 5.55020 5.61525 5.66005 5.71535 5.74055 5.76340 5.80375 5.81721 5.99612 6.02873 6.07864 6.18002 6.44177 6.60253 6.80643 6.84695 7.34958 7.51151 7.54425 7.67119 8.40229 9.52197 10.07771 10.43568 11.45006 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003267 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.838324 B = 8569.224913 C =10140.447080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.595 5.595 8 C 0.520 3.480 9 O -0.512 6.512 10 C 0.520 3.480 11 O -0.518 6.518 12 N -0.594 5.594 13 C 0.075 3.925 14 C 0.048 3.952 15 O -0.355 6.355 16 C 0.076 3.924 17 H 0.065 0.935 18 C 0.163 3.837 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.078 3.922 29 C 0.112 3.888 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 19.026 6.329 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.171 4.171 6 C -0.022 4.022 7 N -0.330 5.330 8 C 0.302 3.698 9 O -0.387 6.387 10 C 0.302 3.698 11 O -0.393 6.393 12 N -0.329 5.329 13 C -0.047 4.047 14 C -0.030 4.030 15 O -0.273 6.273 16 C 0.017 3.983 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.370 5.370 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.045 4.045 29 C -0.009 4.009 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.316 19.506 5.904 21.061 hybrid contribution -0.204 -0.668 0.033 0.699 sum -5.521 18.838 5.937 20.508 Atomic orbital electron populations 1.21763 0.94014 1.02364 1.02170 1.21510 0.96230 1.00161 0.94718 0.90681 1.21621 0.94956 1.01234 0.97603 1.21966 0.96255 1.01512 0.97375 1.22001 0.98445 0.97794 0.83925 1.48132 1.07211 1.59448 1.18223 1.20205 0.87214 0.79352 0.82992 1.90801 1.73368 1.40782 1.33721 1.20202 0.88829 0.81649 0.79105 1.90793 1.61546 1.44356 1.42646 1.48176 1.08033 1.21665 1.55058 1.22528 0.79136 0.99458 1.03602 1.22951 0.97116 0.86905 0.96056 1.88183 1.16337 1.54116 1.68644 1.22776 0.82246 0.93105 1.00143 0.91670 1.20616 0.95194 0.84928 0.95763 1.42199 1.56121 0.99573 1.39109 1.19165 1.21598 0.84843 1.11743 0.91173 1.24734 0.99961 0.97565 0.98480 1.69655 1.38365 1.23936 1.25995 0.86263 0.78534 0.82982 0.78355 1.21219 1.21681 1.21258 1.22604 0.94564 0.87811 0.99516 1.21852 0.77865 1.01687 0.99534 0.92164 0.92198 0.92292 0.91338 0.91223 0.91199 0.90097 0.89924 0.89842 0.89919 0.87946 0.87335 0.92614 0.94743 0.95094 0.77873 0.93450 0.89293 0.89290 0.88604 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.20 37.16 0.34 -0.55 16 2 C -0.11 -0.81 2.87 -90.50 -0.26 -1.06 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.80 5.17 -26.69 -0.14 -0.94 16 5 C -0.13 -1.02 6.10 -26.39 -0.16 -1.18 16 6 C 0.10 0.95 6.35 -3.48 -0.02 0.93 16 7 N -0.60 -6.55 2.97 -173.00 -0.51 -7.06 16 8 C 0.52 7.22 5.56 -11.58 -0.06 7.16 16 9 O -0.51 -8.38 16.51 5.50 0.09 -8.28 16 10 C 0.52 7.41 5.61 -11.58 -0.07 7.34 16 11 O -0.52 -8.37 16.37 5.50 0.09 -8.28 16 12 N -0.59 -7.75 3.02 -172.78 -0.52 -8.27 16 13 C 0.07 0.86 6.65 -3.53 -0.02 0.84 16 14 C 0.05 0.59 6.99 37.31 0.26 0.85 16 15 O -0.35 -5.87 10.34 -35.23 -0.36 -6.23 16 16 C 0.08 1.19 2.81 -26.57 -0.07 1.12 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.16 3.13 5.93 -4.04 -0.02 3.11 16 19 N -0.73 -18.05 5.55 -59.91 -0.33 -18.38 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.08 1.03 5.80 -3.53 -0.02 1.01 16 29 C 0.11 1.04 5.72 -3.71 -0.02 1.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.88 6.23 -51.93 -0.32 0.55 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.13 7.06 -51.93 -0.37 0.77 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.39 10.26 7.67 -40.82 -0.31 9.94 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.09 1.11 6.48 -51.92 -0.34 0.77 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.10 0.99 7.00 -51.93 -0.36 0.63 16 50 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -33.82 397.93 -8.81 -42.63 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.44 Total: 5.54 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -0.52 Total: 12.38 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.64 Total: -60.81 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.18 Total: -22.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.82 -8.81 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280647892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.175 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds